# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:12:09 PDT 2018)
#   negatives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:12:10 PDT 2018)
#        host: indra
#        when: Thu May 10 17:52:58 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.262 C 0.234 G 0.240 T 0.263


MOTIF STGCCAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     STGCCAR    YTGGCAS        235         46   1.6e-040   4.7e-036
#          GTGCCAA    TTGGCAC         87         11   3.0e-017   8.8e-013
#          GTGCCAG    CTGGCAC         84         10   4.4e-017   1.3e-012
#          CTGCCAA    TTGGCAG         55         15   4.1e-007   1.2e-002
#          CTGCCAG    CTGGCAG         43         13   2.5e-005   7.3e-001

letter-probability matrix: alength= 4 w= 7 nsites= 299 E= 4.7e-036
0.000000 0.337793 0.662207 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.511706 0.000000 0.488294 0.000000


MOTIF CYTGGCW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CYTGGCW    WGCCARG        148         40   1.4e-018   4.0e-014
#          CTTGGCT    AGCCAAG         57         13   2.2e-008   6.3e-004
#          CTTGGCA    TGCCAAG         32          5   2.7e-006   7.9e-002
#          CCTGGCT    AGCCAGG         45         16   9.1e-005   2.6e+000
#          CCTGGCA    TGCCAGG         27         10   3.4e-003   9.7e+001

letter-probability matrix: alength= 4 w= 7 nsites= 165 E= 4.0e-014
0.000000 1.000000 0.000000 0.000000
0.000000 0.442424 0.000000 0.557576
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.369697 0.000000 0.000000 0.630303


MOTIF RCCAAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RCCAAAA    TTTTGGY         82         20   3.8e-011   1.1e-006
#          ACCAAAA    TTTTGGT         43         11   4.5e-006   1.3e-001
#          GCCAAAA    TTTTGGC         39          9   5.2e-006   1.5e-001

letter-probability matrix: alength= 4 w= 7 nsites= 83 E= 1.1e-006
0.518072 0.000000 0.481928 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCAAAGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCAAAGA   TCTTTGAT         32          1   2.7e-009   7.5e-005
#         ATCAAAGA   TCTTTGAT         32          1   2.7e-009   7.5e-005

letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 7.5e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCTKAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCTKAAAA   TTTTMAGA         22          0   2.0e-007   5.6e-003
#         TCTGAAAA   TTTTCAGA         15          0   2.8e-005   7.9e-001
#         TCTTAAAA   TTTTAAGA          7          0   7.7e-003   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 5.6e-003
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.681818 0.318182
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 22.92 seconds