Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GCAGCCAY | 8 | GCAGCCAT |
GGAHTAC | 7 | GGAATAC |
AGGMTGAG | 8 | AGGCTGAG |
GGACATGR | 8 | GGACATGA |
CAGCMTGG | 8 | CAGCATGG |
ATASACCA | 8 | ATACACCA |
ATGRAGC | 7 | ATGAAGC |
TAAAAAYA | 8 | TAAAAATA |
GGTGGCKC | 8 | GGTGGCGC |
ATYCTCC | 7 | ATCCTCC |
TAGAGA | 6 | TAGAGA |
GAGKGCAC | 8 | GAGTGCAC |
ARCCATCA | 8 | AACCATCA |
CAAAGCTA | 8 | CAAAGCTA |
GCCTCCC | 7 | GCCTCCC |
AGCTACT | 7 | AGCTACT |
AATGTGG | 7 | AATGTGG |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.263 C 0.237 G 0.237 T 0.263
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
GGAHTAC | DREME-2 | chrX | - | 823271 | 823277 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 1021471 | 1021477 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 1021572 | 1021578 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 1021671 | 1021677 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 1021772 | 1021778 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 1021873 | 1021879 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr17 | + | 2653073 | 2653079 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | + | 3539890 | 3539896 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr6 | + | 3735412 | 3735418 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | - | 3898616 | 3898622 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr17 | + | 4143588 | 4143594 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr6 | - | 11957013 | 11957019 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr16 | - | 12803337 | 12803343 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | + | 16915381 | 16915387 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr5 | - | 17357705 | 17357711 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | + | 19511971 | 19511977 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr3 | + | 24572563 | 24572569 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | - | 29210711 | 29210717 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | + | 29379752 | 29379758 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | - | 30291040 | 30291046 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | - | 30398768 | 30398774 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | + | 32458932 | 32458938 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | + | 33312978 | 33312984 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | - | 37076725 | 37076731 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | - | 37594655 | 37594661 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | + | 40080482 | 40080488 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | + | 40091891 | 40091897 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr19 | - | 40964561 | 40964567 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | - | 44220132 | 44220138 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | + | 44253555 | 44253561 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr20 | + | 45657236 | 45657242 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr17 | + | 46922136 | 46922142 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr12 | - | 46974143 | 46974149 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | + | 46990703 | 46990709 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr17 | - | 47321090 | 47321096 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr19 | - | 49946049 | 49946055 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 50906220 | 50906226 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | + | 68384392 | 68384398 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 68560128 | 68560134 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr10 | + | 74457670 | 74457676 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chrX | + | 74701510 | 74701516 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chrX | - | 75348806 | 75348812 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | - | 78226254 | 78226260 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr6 | - | 78666019 | 78666025 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr17 | - | 78862727 | 78862733 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr17 | - | 78862914 | 78862920 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chrX | + | 79934110 | 79934116 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chrX | + | 83990334 | 83990340 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chrX | + | 84796484 | 84796490 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chrX | - | 88008101 | 88008107 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 93911084 | 93911090 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr7 | - | 100940959 | 100940965 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr12 | - | 101560173 | 101560179 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr6 | + | 115941146 | 115941152 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chrX | + | 123722370 | 123722376 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr7 | - | 128194914 | 128194920 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr7 | - | 149379859 | 149379865 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr3 | + | 176094081 | 176094087 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr3 | + | 187023538 | 187023544 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr3 | + | 191646416 | 191646422 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | + | 223283884 | 223283890 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | - | 225233159 | 225233165 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 225310799 | 225310805 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | + | 226432117 | 226432123 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | + | 229798750 | 229798756 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | + | 231948258 | 231948264 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | + | 232156221 | 232156227 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | + | 232158738 | 232158744 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | + | 233828033 | 233828039 | 6.37e-05 | 0.51 | ggaatac |
GGAHTAC | DREME-2 | chr1 | - | 234762330 | 234762336 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 236186689 | 236186695 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 241425332 | 241425338 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 243528676 | 243528682 | 6.37e-05 | 0.51 | GGAATAC |
GGAHTAC | DREME-2 | chr1 | - | 244563086 | 244563092 | 6.37e-05 | 0.51 | GGAATAC |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif GGAHTAC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_4 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.