******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:174362460-174362960 1.0000 100 chr6:139977759-139978259 1.0000 100 chr15:67285574-67286074 1.0000 100 chr10:87845992-87846492 1.0000 100 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100 chr1:228103470-228103970 1.0000 100 chr19:11344518-11345018 1.0000 100 chr19:33373003-33373503 1.0000 100 chr10:43407792-43408292 1.0000 100 chr19:48588652-48589152 1.0000 100 chr10:133573377-13357387 1.0000 100 chr19:17524568-17525068 1.0000 100 chr8:143784688-143785188 1.0000 100 chr1:27181831-27182331 1.0000 100 chr10:3314579-3315079 1.0000 100 chrX:1447315-1447815 1.0000 100 chr1:205734418-205734918 1.0000 100 chr20:62233681-62234181 1.0000 100 chrX:73944020-73944520 1.0000 100 chr19:38851416-38851916 1.0000 100 chr1:154295568-154296068 1.0000 100 chr22:49767183-49767683 1.0000 100 chr8:630804-631304 1.0000 100 chr6:88031515-88032015 1.0000 100 chr19:45035676-45036176 1.0000 100 chr12:755612-756112 1.0000 100 chr8:144767168-144767668 1.0000 100 chrUn_KI270467v1:2685-31 1.0000 100 chr19:4869933-4870433 1.0000 100 chr12:130584379-13058487 1.0000 100 chr21:38229206-38229706 1.0000 100 chr19:55216229-55216729 1.0000 100 chr9:136872448-136872948 1.0000 100 chr1:236261836-236262336 1.0000 100 chr19:36898383-36898883 1.0000 100 chr19:37371248-37371748 1.0000 100 chr8:11201417-11201917 1.0000 100 chr17:4143133-4143633 1.0000 100 chr19:13277010-13277510 1.0000 100 chr11:1418317-1418817 1.0000 100 chr17:26603650-26604150 1.0000 100 chr17:27695196-27695696 1.0000 100 chr10:93209019-93209519 1.0000 100 chr13:62642899-62643399 1.0000 100 chr9:137294294-137294794 1.0000 100 chr19:434128-434628 1.0000 100 chr7:325757-326257 1.0000 100 chr17:8200234-8200734 1.0000 100 chr19:44476465-44476965 1.0000 100 chr6:3734994-3735494 1.0000 100 chr19:34651657-34652157 1.0000 100 chr5:32187615-32188115 1.0000 100 chr19:57566350-57566850 1.0000 100 chr19:36916420-36916920 1.0000 100 chr8:144456655-144457155 1.0000 100 chr5:1950711-1951211 1.0000 100 chr19:4576139-4576639 1.0000 100 chr10:90136680-90137180 1.0000 100 chr19:37655854-37656354 1.0000 100 chr19:13747292-13747792 1.0000 100 chr7:149529057-149529557 1.0000 100 chr1:29379385-29379885 1.0000 100 chr22:19316652-19317152 1.0000 100 chrX:1418160-1418660 1.0000 100 chr17:36535530-36536030 1.0000 100 chr19:6291976-6292476 1.0000 100 chr17:74513899-74514399 1.0000 100 chr7:139339837-139340337 1.0000 100 chr19:43901818-43902318 1.0000 100 chr1:224932550-224933050 1.0000 100 chr19:43655700-43656200 1.0000 100 chr21:45586393-45586893 1.0000 100 chr12:55829069-55829569 1.0000 100 chr13:41148614-41149114 1.0000 100 chr3:171854572-171855072 1.0000 100 chr22:37844476-37844976 1.0000 100 chr17:21232005-21232505 1.0000 100 chr18:80022589-80023089 1.0000 100 chr1:37554333-37554833 1.0000 100 chr17:78558308-78558808 1.0000 100 chr13:110965225-11096572 1.0000 100 chr19:38544182-38544682 1.0000 100 chr1:3992041-3992541 1.0000 100 chr19:2648559-2649059 1.0000 100 chr17:77233745-77234245 1.0000 100 chr11:1418117-1418617 1.0000 100 chr1:125179946-125180446 1.0000 100 chr1:236097028-236097528 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.258 C 0.242 G 0.242 T 0.258 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.263 C 0.237 G 0.237 T 0.263 ******************************************************************************** ******************************************************************************** MOTIF TARTCCCAGCTMCTYGGGAGGC MEME-1 width = 22 sites = 51 llr = 1220 E-value = 2.0e-287 ******************************************************************************** -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :95::::a::36:::1::a::: pos.-specific C 1::1aaa::a:3715::::::a probability G :14:::::a::::::9aa:aa: matrix T 9::9::::::7:394::::::: bits 2.1 * ** 1.9 ****** ****** 1.7 ******* ****** 1.5 ** ******* * ******* Relative 1.2 ** ******* * ******* Entropy 1.0 ** ******* * ******* (34.5 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TAATCCCAGCTACTCGGGAGGC consensus G ACT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:52995843-52996343 - 59 4.48e-14 CGCGCGCCTG TAATCCCAGCTACTCGGGAGGC TGAGTCAGGA chr18:12701760-12702260 + 45 4.48e-14 cgcgcgcctg taatcccagctactcgggaggc tgaggcggag chr5:140402880-140403380 - 8 4.48e-14 CGCACGCCTG TAATCCCAGCTACTCGGGAGGC TGAGGCA chr22:37844476-37844976 - 12 8.52e-14 CGCGCGCCTG TAGTCCCAGCTACTCGGGAGGC TGAGGCAGGA chr12:55829069-55829569 + 54 8.52e-14 cgcgcacctg tagtcccagctactcgggaggc tgaggcagaa chr1:150320910-150321410 + 61 8.52e-14 cgggcgcctg tagtcccagctactcgggaggc tgaggcagga chr14:49586371-49586871 + 33 8.52e-14 cgcgtgcctg tagtcccagctactcgggaggc tgaggctgga chr17:16536366-16536866 + 27 8.52e-14 cgcgcgcctg tagtcccagctactcgggaggc tgaggcagaa chr10:68956696-68957196 + 24 8.52e-14 cgcgcgcctg tagtcccagctactcgggaggc tgaggcagga chr5:177599256-177599756 - 18 8.52e-14 GGGCGCCTGT TAGTCCCAGCTACTCGGGAGGC TGAGGCAGGA chr14:49862563-49863063 - 41 8.52e-14 CGCGTGCCTG TAGTCCCAGCTACTCGGGAGGC TGAGGTGGGA chr12:124922433-12492293 - 25 8.52e-14 TGCACGCCTG TAGTCCCAGCTACTCGGGAGGC TGAGGCAGGA chr19:4670675-4671175 - 42 8.52e-14 TGAACACCTG TAGTCCCAGCTACTCGGGAGGC TGAGGCAGGT chr17:4143133-4143633 + 71 1.35e-13 cgcgtgcctg taatcccagctacttgggaggc tgaggcag chr3:44532647-44533147 - 51 1.35e-13 CGCACGCCTG TAATCCCAGCTACTTGGGAGGC TGAGGCAGGA chr4:123941-124441 + 38 1.35e-13 tgggcacctg taatcccagctacttgggaggc tgaggagaat chr19:42760495-42760995 - 6 2.20e-13 CGGGCCCCTG TAGTCCCAGCTACTTGGGAGGC TGAGG chr1:156337027-156337527 + 59 1.46e-12 cgcgcgcctg tactcccagctactcgggaggc taaggcagga chr1:205734418-205734918 + 19 1.77e-12 ctcacgcctg taatcccagcactttgggaggc caaggtgggt chr6:53559088-53559588 + 36 1.77e-12 ctcacacctg taatcccagcactttgggaggc cgaggcaggt chr3:169762981-169763481 + 16 1.77e-12 ctcacgcctg taatcccagcactttgggaggc agaagcgggc chr19:40403813-40404313 - 44 1.77e-12 CTCACGCCTG TAATCCCAGCACTTTGGGAGGC CGAGGCGGGA chr17:1258952-1259452 - 58 1.77e-12 CTCACACCTG TAATCCCAGCACTTTGGGAGGC CTGGGCGGGC chr6:16128374-16128874 - 19 1.77e-12 CTCACGCCTG TAATCCCAGCACTTTGGGAGGC CGAGATGGGT chr6:107027736-107028236 + 73 1.93e-12 tgggcgcctg tagtcccagctactcaggaggc tgaggc chr5:140719038-140719538 + 73 1.93e-12 cgggcgcctg tagccccagctactcgggaggc tgaggc chr17:49569585-49570085 - 48 2.41e-12 CGCGCGCCTG TAATCCCAGCTACGCGGGAGGC TGAGGTAGGA chr22:36482231-36482731 - 15 2.41e-12 CGCGCGCCTG TAATCCCAGCTACCTGGGAGGC TGAGGCAGGA chr22:40711332-40711832 + 9 3.02e-12 tgtggctg tggtcccagctacttgggaggc tgaggcagga chr12:56685285-56685785 - 34 3.02e-12 CGGGCGCCTG TGGTCCCAGCTACTTGGGAGGC TAAGGCAAGA chr15:69453896-69454396 - 51 4.76e-12 CGCACGCCTG TAGTCCCAGCTGCTCGGGAGGC TGAGGCAGGA chr19:36796870-36797370 - 75 4.76e-12 CCTA TAGTCCCAGCTACTCGGGAAGC TGAGGCCGCA chr10:43407792-43408292 - 48 8.76e-12 CGCGCGCCTG TTGTCCCAGCTACTCGGGAGGC TGAGGCGGGA chr6:26572247-26572747 + 5 1.86e-11 cctg taatcccagcattttgggaggc cgaggcgggt chr19:34218002-34218502 - 55 2.60e-11 CTCACGCCTG TAACCCCAGCACTTTGGGAGGC CGGGGCGGGC chr9:86348381-86348881 + 50 2.75e-11 ctcactcctg tggtcccagctactcaggaggc tgagacggaa chr1:37554333-37554833 + 69 3.12e-11 cgcgcacctg caatcccagttactcgggaggc tgaggcaaat chr19:38851416-38851916 + 26 3.12e-11 ctcacacctg taatcccagcacttggggaggc caaggcggaa chr19:33063994-33064494 + 18 3.51e-11 ggcgcgcctg cagtcccagttactcgggaggc tggggcggga chr1:228103470-228103970 + 8 3.82e-11 acacctg taattccagctactcaggaggc tgaagcagga chr6:30907537-30908037 - 36 4.08e-11 CTCACGCCTG TAATCCTAGCACTTTGGGAGGC CGAGGCGGCG chr19:36379255-36379755 - 54 5.51e-11 CGCGCGCCTG CAGTCCCAGCTACTCTGGAGGC TCGGGTGGGA chr12:755612-756112 + 41 1.20e-10 cgcgcgcctg taattccaactactcgggaggc tgaggcagga chr19:40832077-40832577 + 7 1.20e-10 cgcctg taatcccagcacactgggaggc caaggagggt chr6:27214046-27214546 - 59 1.42e-10 CGCGCGCCTG TAATCCCAGCTCATCGAGAGGC TGAGGCAGGA chr9:83987078-83987578 - 28 2.88e-10 CTCACGCCTG TAACCCTAGCACTTTGGGAGGC CGAGGCGGGT chr1:233843390-233843890 - 47 3.22e-10 CTCATGCCTG TAATCCCATCATTTTGGGAGGC TGAGGCAAGA chr19:44211883-44212383 - 58 3.41e-10 AATAAAAAAA GACTCCCAGCACTTTGGGAGGC CGAGGCGGGC chrX:1799849-1800349 + 49 3.59e-10 ctcacgcctg caatcacagcactttgggaggc cgaggtgggc chr6:17565322-17565822 - 51 1.41e-09 CTCATGCCTG TAATCCCAGCACTCTAGGAAGC CAAGGTGGGC chr19:33373003-33373503 - 9 7.30e-09 CTCCCGCCTA TAATCTCAGCGCCGAGGGAGGC CGAGGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:52995843-52996343 4.5e-14 58_[-1]_20 chr18:12701760-12702260 4.5e-14 44_[+1]_34 chr5:140402880-140403380 4.5e-14 7_[-1]_71 chr22:37844476-37844976 8.5e-14 11_[-1]_67 chr12:55829069-55829569 8.5e-14 53_[+1]_25 chr1:150320910-150321410 8.5e-14 60_[+1]_18 chr14:49586371-49586871 8.5e-14 32_[+1]_46 chr17:16536366-16536866 8.5e-14 26_[+1]_52 chr10:68956696-68957196 8.5e-14 23_[+1]_55 chr5:177599256-177599756 8.5e-14 17_[-1]_61 chr14:49862563-49863063 8.5e-14 40_[-1]_38 chr12:124922433-12492293 8.5e-14 24_[-1]_54 chr19:4670675-4671175 8.5e-14 41_[-1]_37 chr17:4143133-4143633 1.3e-13 70_[+1]_8 chr3:44532647-44533147 1.3e-13 50_[-1]_28 chr4:123941-124441 1.3e-13 37_[+1]_41 chr19:42760495-42760995 2.2e-13 5_[-1]_73 chr1:156337027-156337527 1.5e-12 58_[+1]_20 chr1:205734418-205734918 1.8e-12 18_[+1]_60 chr6:53559088-53559588 1.8e-12 35_[+1]_43 chr3:169762981-169763481 1.8e-12 15_[+1]_63 chr19:40403813-40404313 1.8e-12 43_[-1]_35 chr17:1258952-1259452 1.8e-12 57_[-1]_21 chr6:16128374-16128874 1.8e-12 18_[-1]_60 chr6:107027736-107028236 1.9e-12 72_[+1]_6 chr5:140719038-140719538 1.9e-12 72_[+1]_6 chr17:49569585-49570085 2.4e-12 47_[-1]_31 chr22:36482231-36482731 2.4e-12 14_[-1]_64 chr22:40711332-40711832 3e-12 8_[+1]_70 chr12:56685285-56685785 3e-12 33_[-1]_45 chr15:69453896-69454396 4.8e-12 50_[-1]_28 chr19:36796870-36797370 4.8e-12 74_[-1]_4 chr10:43407792-43408292 8.8e-12 47_[-1]_31 chr6:26572247-26572747 1.9e-11 4_[+1]_74 chr19:34218002-34218502 2.6e-11 54_[-1]_24 chr9:86348381-86348881 2.8e-11 49_[+1]_29 chr1:37554333-37554833 3.1e-11 68_[+1]_10 chr19:38851416-38851916 3.1e-11 25_[+1]_53 chr19:33063994-33064494 3.5e-11 17_[+1]_61 chr1:228103470-228103970 3.8e-11 7_[+1]_71 chr6:30907537-30908037 4.1e-11 35_[-1]_43 chr19:36379255-36379755 5.5e-11 53_[-1]_25 chr12:755612-756112 1.2e-10 40_[+1]_38 chr19:40832077-40832577 1.2e-10 6_[+1]_72 chr6:27214046-27214546 1.4e-10 58_[-1]_20 chr9:83987078-83987578 2.9e-10 27_[-1]_51 chr1:233843390-233843890 3.2e-10 46_[-1]_32 chr19:44211883-44212383 3.4e-10 57_[-1]_21 chrX:1799849-1800349 3.6e-10 48_[+1]_30 chr6:17565322-17565822 1.4e-09 50_[-1]_28 chr19:33373003-33373503 7.3e-09 8_[-1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TARTCCCAGCTMCTYGGGAGGC width=22 seqs=51 chr6:52995843-52996343 ( 59) TAATCCCAGCTACTCGGGAGGC 1 chr18:12701760-12702260 ( 45) TAATCCCAGCTACTCGGGAGGC 1 chr5:140402880-140403380 ( 8) TAATCCCAGCTACTCGGGAGGC 1 chr22:37844476-37844976 ( 12) TAGTCCCAGCTACTCGGGAGGC 1 chr12:55829069-55829569 ( 54) TAGTCCCAGCTACTCGGGAGGC 1 chr1:150320910-150321410 ( 61) TAGTCCCAGCTACTCGGGAGGC 1 chr14:49586371-49586871 ( 33) TAGTCCCAGCTACTCGGGAGGC 1 chr17:16536366-16536866 ( 27) TAGTCCCAGCTACTCGGGAGGC 1 chr10:68956696-68957196 ( 24) TAGTCCCAGCTACTCGGGAGGC 1 chr5:177599256-177599756 ( 18) TAGTCCCAGCTACTCGGGAGGC 1 chr14:49862563-49863063 ( 41) TAGTCCCAGCTACTCGGGAGGC 1 chr12:124922433-12492293 ( 25) TAGTCCCAGCTACTCGGGAGGC 1 chr19:4670675-4671175 ( 42) TAGTCCCAGCTACTCGGGAGGC 1 chr17:4143133-4143633 ( 71) TAATCCCAGCTACTTGGGAGGC 1 chr3:44532647-44533147 ( 51) TAATCCCAGCTACTTGGGAGGC 1 chr4:123941-124441 ( 38) TAATCCCAGCTACTTGGGAGGC 1 chr19:42760495-42760995 ( 6) TAGTCCCAGCTACTTGGGAGGC 1 chr1:156337027-156337527 ( 59) TACTCCCAGCTACTCGGGAGGC 1 chr1:205734418-205734918 ( 19) TAATCCCAGCACTTTGGGAGGC 1 chr6:53559088-53559588 ( 36) TAATCCCAGCACTTTGGGAGGC 1 chr3:169762981-169763481 ( 16) TAATCCCAGCACTTTGGGAGGC 1 chr19:40403813-40404313 ( 44) TAATCCCAGCACTTTGGGAGGC 1 chr17:1258952-1259452 ( 58) TAATCCCAGCACTTTGGGAGGC 1 chr6:16128374-16128874 ( 19) TAATCCCAGCACTTTGGGAGGC 1 chr6:107027736-107028236 ( 73) TAGTCCCAGCTACTCAGGAGGC 1 chr5:140719038-140719538 ( 73) TAGCCCCAGCTACTCGGGAGGC 1 chr17:49569585-49570085 ( 48) TAATCCCAGCTACGCGGGAGGC 1 chr22:36482231-36482731 ( 15) TAATCCCAGCTACCTGGGAGGC 1 chr22:40711332-40711832 ( 9) TGGTCCCAGCTACTTGGGAGGC 1 chr12:56685285-56685785 ( 34) TGGTCCCAGCTACTTGGGAGGC 1 chr15:69453896-69454396 ( 51) TAGTCCCAGCTGCTCGGGAGGC 1 chr19:36796870-36797370 ( 75) TAGTCCCAGCTACTCGGGAAGC 1 chr10:43407792-43408292 ( 48) TTGTCCCAGCTACTCGGGAGGC 1 chr6:26572247-26572747 ( 5) TAATCCCAGCATTTTGGGAGGC 1 chr19:34218002-34218502 ( 55) TAACCCCAGCACTTTGGGAGGC 1 chr9:86348381-86348881 ( 50) TGGTCCCAGCTACTCAGGAGGC 1 chr1:37554333-37554833 ( 69) CAATCCCAGTTACTCGGGAGGC 1 chr19:38851416-38851916 ( 26) TAATCCCAGCACTTGGGGAGGC 1 chr19:33063994-33064494 ( 18) CAGTCCCAGTTACTCGGGAGGC 1 chr1:228103470-228103970 ( 8) TAATTCCAGCTACTCAGGAGGC 1 chr6:30907537-30908037 ( 36) TAATCCTAGCACTTTGGGAGGC 1 chr19:36379255-36379755 ( 54) CAGTCCCAGCTACTCTGGAGGC 1 chr12:755612-756112 ( 41) TAATTCCAACTACTCGGGAGGC 1 chr19:40832077-40832577 ( 7) TAATCCCAGCACACTGGGAGGC 1 chr6:27214046-27214546 ( 59) TAATCCCAGCTCATCGAGAGGC 1 chr9:83987078-83987578 ( 28) TAACCCTAGCACTTTGGGAGGC 1 chr1:233843390-233843890 ( 47) TAATCCCATCATTTTGGGAGGC 1 chr19:44211883-44212383 ( 58) GACTCCCAGCACTTTGGGAGGC 1 chrX:1799849-1800349 ( 49) CAATCACAGCACTTTGGGAGGC 1 chr6:17565322-17565822 ( 51) TAATCCCAGCACTCTAGGAAGC 1 chr19:33373003-33373503 ( 9) TAATCTCAGCGCCGAGGGAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.479 E= 2.0e-287 -1232 -159 -359 178 181 -1232 -201 -374 106 -259 80 -1232 -1232 -201 -1232 184 -1232 202 -1232 -274 -374 202 -1232 -374 -1232 202 -1232 -274 193 -1232 -1232 -1232 -374 -1232 202 -374 -1232 202 -1232 -274 25 -1232 -359 134 125 41 -359 -274 -274 149 -1232 16 -1232 -201 -259 178 -374 116 -359 71 -175 -1232 193 -374 -374 -1232 205 -1232 -1232 -1232 208 -1232 193 -1232 -1232 -1232 -274 -1232 202 -1232 -1232 -1232 208 -1232 -1232 208 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 51 E= 2.0e-287 0.000000 0.078431 0.019608 0.901961 0.921569 0.000000 0.058824 0.019608 0.549020 0.039216 0.411765 0.000000 0.000000 0.058824 0.000000 0.941176 0.000000 0.960784 0.000000 0.039216 0.019608 0.960784 0.000000 0.019608 0.000000 0.960784 0.000000 0.039216 1.000000 0.000000 0.000000 0.000000 0.019608 0.000000 0.960784 0.019608 0.000000 0.960784 0.000000 0.039216 0.313725 0.000000 0.019608 0.666667 0.627451 0.313725 0.019608 0.039216 0.039216 0.666667 0.000000 0.294118 0.000000 0.058824 0.039216 0.901961 0.019608 0.529412 0.019608 0.431373 0.078431 0.000000 0.901961 0.019608 0.019608 0.000000 0.980392 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.039216 0.000000 0.960784 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TARTCCCAGCTMCTYGGGAGGC MEME-1 regular expression -------------------------------------------------------------------------------- TA[AG]TCCCAGC[TA][AC][CT]T[CT]GGGAGGC -------------------------------------------------------------------------------- Time 405.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAYRMAGCYATAAWAAAS MEME-2 width = 19 sites = 98 llr = 1581 E-value = 2.4e-298 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:53a:::9:776aa5: pos.-specific C 8::4:6::96:21::::24 probability G ::::51:a::::33:::16 matrix T 29:6::::14:8::4::21 bits 2.1 1.9 * * * 1.7 * *** * ** 1.5 ** *** * ** Relative 1.2 ** *** * ** Entropy 1.0 *** ****** **** (23.3 bits) 0.8 ***** *********** * 0.6 ***************** * 0.4 ***************** * 0.2 ******************* 0.0 ------------------- Multilevel CTATGCAGCCATAAAAAAG consensus T CAA T GGT CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chr1:233827818-233828318 + 22 4.60e-12 caatggaata ctatgcagccataaaaaag gatgagttca chr1:226431886-226432386 + 38 4.60e-12 ctgtggaata ctatgcagccataaaaaag gatgagttca chr1:225310530-225311030 - 52 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGAGCTCA chr19:37076452-37076952 - 56 4.60e-12 TCATGGAATA CTATGCAGCCATAAAAAAG GATGAGTTCA chr1:241425043-241425543 - 72 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGGGTTCA chr3:24572341-24572841 + 29 4.60e-12 ccatggaata ctatgcagccataaaaaag gactactatg chrX:78225968-78226468 - 69 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGAGTTCA chr19:30290742-30291242 - 81 4.60e-12 A CTATGCAGCCATAAAAAAG GATGAGTTCA chr19:44219897-44220397 - 18 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGAGTTCA chr17:2652854-2653354 + 26 4.60e-12 tcgtggaata ctatgcagccataaaaaag gatgagtttg chr1:231948061-231948561 + 4 4.60e-12 ata ctatgcagccataaaaaag gataagttca chr19:30398482-30398982 - 69 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATAATTTCA chrX:68559858-68560358 - 53 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGACTTCA chrX:88007833-88008333 - 51 4.60e-12 TCATGGAATA CTATGCAGCCATAAAAAAG GATGAGTTCA chr12:46973879-46974379 - 47 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGAGTTCA chr1:46990480-46990980 + 30 4.60e-12 ccatggaata ctatgcagccataaaaaag gatgagttca chr10:74457453-74457953 + 24 4.60e-12 ccatggaata ctatgcagccataaaaaag gatgagttca chr1:234762065-234762565 - 48 4.60e-12 CCATGGAATA CTATGCAGCCATAAAAAAG GATGAGTTCA chr1:223285390-223285890 + 60 4.60e-12 ccatgaaata ctatgcagccataaaaaag aacaagatca chr5:38516646-38517146 + 21 4.60e-12 ccatggagta ctatgcagccataaaaaag gatgagttca chr1:232158494-232158994 + 51 1.38e-11 ctatggaata ctacgcagccataaaaaag aaagagatta chr1:223283671-223284171 + 20 1.38e-11 ccatggaata ctacgcagccataaaaaag gatgagttca chr15:77400258-77400758 + 9 1.38e-11 atggagta ctatacagccataaaaaag aatgagatct chr1:244562804-244563304 - 65 7.08e-11 CCATGGAATA CTATGCAGCCATGAAAAAG GCTGAATTCA chr19:33312770-33313270 + 15 7.08e-11 ccgtggaata ctatgcagccatgaaaaag aatgagattc chr19:3539668-3540168 + 29 7.08e-11 ttatggaata ctatgcagccatgaaaaag aagagtgaaa chr20:45657027-45657527 + 16 7.08e-11 ccatggaata ctatgcagccatgaaaaag gatgagttca chr1:229798510-229799010 + 47 7.08e-11 cagtggaata ctatgcagccatgaaaaag aatgcgatca chrX:19511736-19512236 + 42 7.08e-11 caatggaata ctatgcagccatgaaaaag gatgagttca chrX:823013-823513 - 41 7.08e-11 CCATGGAATA CTATGCAGCCATGAAAAAG GATGAGTTCA chr6:78665769-78666269 - 33 7.08e-11 CCATGGAATA CTATGCAGCCATGAAAAAG GATGAGTTCA chr3:176093856-176094356 + 32 7.08e-11 ccatggaata ctatgcagccatgaaaaag gataagttca chrX:83990098-83990598 + 43 2.16e-10 acatggaata ctatgcagctatgaaaaag gatgagttca chr19:44253352-44253852 + 10 2.74e-10 catggaata ctatgcagccataaaaagg attaattcat chr1:236186397-236186897 - 75 2.74e-10 TGGAATA CTATGCAGCCATAAAAAGG GATGAGTTCA chr19:40091681-40092181 + 17 2.74e-10 ccatggaata ctatgcagccataaaaagg atgagttcat chr1:225232883-225233383 - 59 2.74e-10 CCATGGAATA CTATGCAGCCATAAAAAGG AATGAGATCA chr3:191646218-191646718 + 5 3.46e-10 aata ctatacagctatgaaaaag acaaaatcat chrX:75348547-75349047 - 42 1.48e-09 CCATGGAATA CTATGCAGCCATCAAAAAG GATGAGTTCA chr1:93910801-93911301 - 66 1.48e-09 CCATGGAATA CTATGCAGCCATCAAAAAG GATGAGTTCA chr5:17357437-17357937 - 51 1.48e-09 CCATGGAATA CTATACAGCCATGAAAAGG GATGAGATCA chr19:29210450-29210950 - 44 1.69e-09 CCGTGGAATA CTATGCAGCCATAAAAAAT GATGAGTTCA chr6:11956723-11957223 - 73 4.17e-09 TATGGAATA CTATGCAGCCATGAAAAAT GAATGACATA chr3:187023315-187023815 + 30 4.17e-09 ccatggaata ctatgcagccatgaaaaat gatgagttca chr19:49945779-49946279 - 53 4.64e-09 CCATGGAATA CTATGCAGCCAGAAAAAAG GATGATCATG chr1:224932550-224933050 - 72 5.19e-09 TCAAAATATA CTACAAAGCTATAATAACC CAAACTGCAT chr19:34651657-34652157 + 24 5.19e-09 tcaaaataga ctacaaagctatagtaaac aaaacagcat chr19:40080240-40080740 + 49 5.19e-09 ccaaggaata ctatgcaaccataaaaaag aacaagatta chrX:123722139-123722639 + 38 5.19e-09 ccatggaata ctatgcaaccataaaaaag gatgagttca chr19:36690865-36691365 + 11 5.76e-09 ctgaggagta ttatgcagccatgaaaagg gatcagttgc chr19:3910056-3910556 - 32 5.76e-09 CAGTGGAATA TTATGCAGCCATGAAAAGG AAGGAGGCTC chr19:11631785-11632285 + 21 5.76e-09 tagtggagta ctattcagccatgaaaaag actgagatcc chr15:70373340-70373840 + 11 7.07e-09 ccatggaata gtatgcagccataaaaaag gatgagttca chrX:74701281-74701781 + 36 7.07e-09 ccatggaata ctatgcagtcatgaaaaag gatgagttca chr1:40357545-40358045 - 73 1.17e-08 TAAATTATA CTACAAAGCTATAGTAACC AAAACAGCAT chrX:79933878-79934378 + 39 1.17e-08 ccatggaata ctatgcagccctgaaaaag aatgagatca chr12:1058344-1058844 - 42 1.17e-08 TCAAAATACA CTACAAAGCTATAGTAACC AAAACAGCAT chr15:67285574-67286074 - 54 1.17e-08 TCAAATTATA CTACAAAGCTATAGTAACC AAAACAGCAT chr8:99024414-99024914 - 79 1.57e-08 AAA CTACAAAGCTATAGTAATC AAAACAGCAT chr6:151210996-151211496 + 37 1.91e-08 tcaaaatatg ttacaaagctatagtaaac aaaacagcat chr1:50905999-50906499 - 72 2.11e-08 TCAAACTATA CTACAAAGCTACAATAACC AAAACAGCAT chr18:8926411-8926911 + 20 2.82e-08 tcaaaactta ctacaaagctacaataatc aaaacggtat chr19:9668473-9668973 + 42 4.14e-08 tcaaaatata ctacaaagctatcataacc aaatcagcat chr3:171715097-171715597 - 50 4.14e-08 TCAAAATATA TTACAAAGCTATAGTAACC AAAACAGTAT chr1:233779994-233780494 - 61 4.54e-08 TTAAATTATA CTACAAAGCTACAGTAACC AAAACAGCAT chrX:1021417-1021917 - 37 4.54e-08 CAATGGAATA CTACACAGCCAGGAAAAGG AATGAGGGTC chr1:244500468-244500968 - 69 4.54e-08 TGAAACTATA CTACAAAGCTACAGTAACC AAAACAGCAT chr5:174479268-174479768 + 34 5.45e-08 tcaaaatata ttacaaagctatagtaatc aaaacaatat chr5:174362460-174362960 + 62 6.52e-08 caatggaata ttattcagccatgaaaagg aatgaagtgc chr5:69140760-69141260 - 60 9.93e-08 TCAAAATATA CTACAGAGCTACAATAACC AAAACAGCAT chrX:84796256-84796756 + 35 1.36e-07 ccatggaata ctatacagtcaggaaaaag aacaaggtaa chr12:21950590-21951090 + 23 1.70e-07 tcaaaatata ttacaaagctacagtaatc aaaacagtat chr15:68096052-68096552 - 67 1.70e-07 TCAAAACGTA TTACAAAGCTACAGTAATC AAAACAGTGT chr19:12198085-12198585 - 30 1.70e-07 TCAAATTATA TTACAGAGCTATAGTAACC AAAACAGCAT chrX:149022410-149022910 + 38 1.70e-07 ttaaactata ttacaaagctacagtaatc aaaacagtac chr1:7395189-7395689 - 73 1.83e-07 CAAAATATA CAACAAAGCTATAATAATC AAAACAGCAT chr1:228188198-228188698 - 51 2.61e-07 TCAAACTATA CTACAGAGTTATAATAACC AAAACAGCAT chr20:21177709-21178209 - 62 4.25e-07 TCAAAATATA TTACAAAGCTACCATAATC AAAACAGTAT chr19:39987088-39987588 + 53 4.55e-07 tcaaaatata ttacaaggctatgataacc aaaacagtat chr15:70950905-70951405 - 46 4.87e-07 TCAAACTATA TTACAAAGCTACAGTAACT GAAACAGCAT chr15:81977454-81977954 + 59 5.57e-07 aaaaactata ttacaaaactatagtaatc aaaacagtat chr6:6950698-6951198 + 46 5.57e-07 tcaaactata ttacaaaactatagtaatc aaaacagtat chr5:32187615-32188115 + 30 5.95e-07 ttcaagtata ttacaaagctacagtaatt aaaacagtat chr1:50887500-50888000 - 70 6.36e-07 TGAAACTATA CTGCAAAGCTACAGTAACC AAAACAGCAT chr19:36898383-36898883 + 24 9.91e-07 tcaaaatata ctacaaagctgtcgtaacc aaaacagcat chr6:3734994-3735494 + 14 1.12e-06 tcaaaatata cgacagagctacagtaaac aaaacagcat chr17:28262059-28262559 + 37 1.67e-06 aatgtctgtc ttatacagttgtgataagg gatgaaatat chr1:236261836-236262336 + 49 2.08e-06 gcaaaatata ttacaaagctactgtaatc aaaacagcat chr14:59063193-59063693 + 24 2.08e-06 taaaactata gtacaaagctatagtagtc agaacagtat chr19:3898382-3898882 - 17 2.20e-06 CAATGGAATA CTATTTAGCCCTGAAAAGG AACAGGGCTC chr10:74510998-74511498 - 56 2.87e-06 TCAAAATATA TCACAAAGCTATAATAACA CAAACAGCAT chr1:224914261-224914761 - 37 3.02e-06 CATAGATAAA CCAAACAGCTATCAAAAAT GTCACAGAAA chr19:44252246-44252746 + 58 3.35e-06 tcaaactata ctacaaggctacagtagcc aaaacagcat chr17:47320820-47321320 + 41 3.53e-06 ttaaaataaa cgacaaagttacagtaatc aaaacagcat chr10:73166911-73167411 - 79 3.72e-06 ATA CAACAGAGTTATAGTAACC AAAACAGCAT chr1:229354217-229354717 - 55 4.33e-06 TCAAAACATA TTGCAAAGCTATAGTAGTC AAAACAGTAT chr22:39276941-39277441 + 51 4.78e-06 caatggaata ttacttggccatgaaaagg aatgttcttt chr10:87845992-87846492 - 58 9.58e-06 GGAAGGGAGA TTAAACAGCTCAAATAACC AATTAGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:233827818-233828318 4.6e-12 21_[+2]_60 chr1:226431886-226432386 4.6e-12 37_[+2]_44 chr1:225310530-225311030 4.6e-12 51_[-2]_30 chr19:37076452-37076952 4.6e-12 55_[-2]_26 chr1:241425043-241425543 4.6e-12 71_[-2]_10 chr3:24572341-24572841 4.6e-12 28_[+2]_53 chrX:78225968-78226468 4.6e-12 68_[-2]_13 chr19:30290742-30291242 4.6e-12 80_[-2]_1 chr19:44219897-44220397 4.6e-12 17_[-2]_64 chr17:2652854-2653354 4.6e-12 25_[+2]_56 chr1:231948061-231948561 4.6e-12 3_[+2]_78 chr19:30398482-30398982 4.6e-12 68_[-2]_13 chrX:68559858-68560358 4.6e-12 52_[-2]_29 chrX:88007833-88008333 4.6e-12 50_[-2]_31 chr12:46973879-46974379 4.6e-12 46_[-2]_35 chr1:46990480-46990980 4.6e-12 29_[+2]_52 chr10:74457453-74457953 4.6e-12 23_[+2]_58 chr1:234762065-234762565 4.6e-12 47_[-2]_34 chr1:223285390-223285890 4.6e-12 59_[+2]_22 chr5:38516646-38517146 4.6e-12 20_[+2]_61 chr1:232158494-232158994 1.4e-11 50_[+2]_31 chr1:223283671-223284171 1.4e-11 19_[+2]_62 chr15:77400258-77400758 1.4e-11 8_[+2]_73 chr1:244562804-244563304 7.1e-11 64_[-2]_17 chr19:33312770-33313270 7.1e-11 14_[+2]_67 chr19:3539668-3540168 7.1e-11 28_[+2]_53 chr20:45657027-45657527 7.1e-11 15_[+2]_66 chr1:229798510-229799010 7.1e-11 46_[+2]_35 chrX:19511736-19512236 7.1e-11 41_[+2]_40 chrX:823013-823513 7.1e-11 40_[-2]_41 chr6:78665769-78666269 7.1e-11 32_[-2]_49 chr3:176093856-176094356 7.1e-11 31_[+2]_50 chrX:83990098-83990598 2.2e-10 42_[+2]_39 chr19:44253352-44253852 2.7e-10 9_[+2]_72 chr1:236186397-236186897 2.7e-10 74_[-2]_7 chr19:40091681-40092181 2.7e-10 16_[+2]_65 chr1:225232883-225233383 2.7e-10 58_[-2]_23 chr3:191646218-191646718 3.5e-10 4_[+2]_77 chrX:75348547-75349047 1.5e-09 41_[-2]_40 chr1:93910801-93911301 1.5e-09 65_[-2]_16 chr5:17357437-17357937 1.5e-09 50_[-2]_31 chr19:29210450-29210950 1.7e-09 43_[-2]_38 chr6:11956723-11957223 4.2e-09 72_[-2]_9 chr3:187023315-187023815 4.2e-09 29_[+2]_52 chr19:49945779-49946279 4.6e-09 52_[-2]_29 chr1:224932550-224933050 5.2e-09 71_[-2]_10 chr19:34651657-34652157 5.2e-09 23_[+2]_58 chr19:40080240-40080740 5.2e-09 48_[+2]_33 chrX:123722139-123722639 5.2e-09 37_[+2]_44 chr19:36690865-36691365 5.8e-09 10_[+2]_71 chr19:3910056-3910556 5.8e-09 31_[-2]_50 chr19:11631785-11632285 5.8e-09 20_[+2]_61 chr15:70373340-70373840 7.1e-09 10_[+2]_71 chrX:74701281-74701781 7.1e-09 35_[+2]_46 chr1:40357545-40358045 1.2e-08 72_[-2]_9 chrX:79933878-79934378 1.2e-08 38_[+2]_43 chr12:1058344-1058844 1.2e-08 41_[-2]_40 chr15:67285574-67286074 1.2e-08 53_[-2]_28 chr8:99024414-99024914 1.6e-08 78_[-2]_3 chr6:151210996-151211496 1.9e-08 36_[+2]_45 chr1:50905999-50906499 2.1e-08 71_[-2]_10 chr18:8926411-8926911 2.8e-08 19_[+2]_62 chr19:9668473-9668973 4.1e-08 41_[+2]_40 chr3:171715097-171715597 4.1e-08 49_[-2]_32 chr1:233779994-233780494 4.5e-08 60_[-2]_21 chrX:1021417-1021917 4.5e-08 36_[-2]_45 chr1:244500468-244500968 4.5e-08 68_[-2]_13 chr5:174479268-174479768 5.4e-08 33_[+2]_48 chr5:174362460-174362960 6.5e-08 61_[+2]_20 chr5:69140760-69141260 9.9e-08 59_[-2]_22 chrX:84796256-84796756 1.4e-07 34_[+2]_47 chr12:21950590-21951090 1.7e-07 22_[+2]_59 chr15:68096052-68096552 1.7e-07 66_[-2]_15 chr19:12198085-12198585 1.7e-07 29_[-2]_52 chrX:149022410-149022910 1.7e-07 37_[+2]_44 chr1:7395189-7395689 1.8e-07 72_[-2]_9 chr1:228188198-228188698 2.6e-07 50_[-2]_31 chr20:21177709-21178209 4.2e-07 61_[-2]_20 chr19:39987088-39987588 4.5e-07 52_[+2]_29 chr15:70950905-70951405 4.9e-07 45_[-2]_36 chr15:81977454-81977954 5.6e-07 58_[+2]_23 chr6:6950698-6951198 5.6e-07 45_[+2]_36 chr5:32187615-32188115 6e-07 29_[+2]_52 chr1:50887500-50888000 6.4e-07 69_[-2]_12 chr19:36898383-36898883 9.9e-07 23_[+2]_58 chr6:3734994-3735494 1.1e-06 13_[+2]_68 chr17:28262059-28262559 1.7e-06 36_[+2]_45 chr1:236261836-236262336 2.1e-06 48_[+2]_33 chr14:59063193-59063693 2.1e-06 23_[+2]_58 chr19:3898382-3898882 2.2e-06 16_[-2]_65 chr10:74510998-74511498 2.9e-06 55_[-2]_26 chr1:224914261-224914761 3e-06 36_[-2]_45 chr19:44252246-44252746 3.4e-06 57_[+2]_24 chr17:47320820-47321320 3.5e-06 40_[+2]_41 chr10:73166911-73167411 3.7e-06 78_[-2]_3 chr1:229354217-229354717 4.3e-06 54_[-2]_27 chr22:39276941-39277441 4.8e-06 50_[+2]_31 chr10:87845992-87846492 9.6e-06 57_[-2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAYRMAGCYATAAWAAAS width=19 seqs=98 chr1:233827818-233828318 ( 22) CTATGCAGCCATAAAAAAG 1 chr1:226431886-226432386 ( 38) CTATGCAGCCATAAAAAAG 1 chr1:225310530-225311030 ( 52) CTATGCAGCCATAAAAAAG 1 chr19:37076452-37076952 ( 56) CTATGCAGCCATAAAAAAG 1 chr1:241425043-241425543 ( 72) CTATGCAGCCATAAAAAAG 1 chr3:24572341-24572841 ( 29) CTATGCAGCCATAAAAAAG 1 chrX:78225968-78226468 ( 69) CTATGCAGCCATAAAAAAG 1 chr19:30290742-30291242 ( 81) CTATGCAGCCATAAAAAAG 1 chr19:44219897-44220397 ( 18) CTATGCAGCCATAAAAAAG 1 chr17:2652854-2653354 ( 26) CTATGCAGCCATAAAAAAG 1 chr1:231948061-231948561 ( 4) CTATGCAGCCATAAAAAAG 1 chr19:30398482-30398982 ( 69) CTATGCAGCCATAAAAAAG 1 chrX:68559858-68560358 ( 53) CTATGCAGCCATAAAAAAG 1 chrX:88007833-88008333 ( 51) CTATGCAGCCATAAAAAAG 1 chr12:46973879-46974379 ( 47) CTATGCAGCCATAAAAAAG 1 chr1:46990480-46990980 ( 30) CTATGCAGCCATAAAAAAG 1 chr10:74457453-74457953 ( 24) CTATGCAGCCATAAAAAAG 1 chr1:234762065-234762565 ( 48) CTATGCAGCCATAAAAAAG 1 chr1:223285390-223285890 ( 60) CTATGCAGCCATAAAAAAG 1 chr5:38516646-38517146 ( 21) CTATGCAGCCATAAAAAAG 1 chr1:232158494-232158994 ( 51) CTACGCAGCCATAAAAAAG 1 chr1:223283671-223284171 ( 20) CTACGCAGCCATAAAAAAG 1 chr15:77400258-77400758 ( 9) CTATACAGCCATAAAAAAG 1 chr1:244562804-244563304 ( 65) CTATGCAGCCATGAAAAAG 1 chr19:33312770-33313270 ( 15) CTATGCAGCCATGAAAAAG 1 chr19:3539668-3540168 ( 29) CTATGCAGCCATGAAAAAG 1 chr20:45657027-45657527 ( 16) CTATGCAGCCATGAAAAAG 1 chr1:229798510-229799010 ( 47) CTATGCAGCCATGAAAAAG 1 chrX:19511736-19512236 ( 42) CTATGCAGCCATGAAAAAG 1 chrX:823013-823513 ( 41) CTATGCAGCCATGAAAAAG 1 chr6:78665769-78666269 ( 33) CTATGCAGCCATGAAAAAG 1 chr3:176093856-176094356 ( 32) CTATGCAGCCATGAAAAAG 1 chrX:83990098-83990598 ( 43) CTATGCAGCTATGAAAAAG 1 chr19:44253352-44253852 ( 10) CTATGCAGCCATAAAAAGG 1 chr1:236186397-236186897 ( 75) CTATGCAGCCATAAAAAGG 1 chr19:40091681-40092181 ( 17) CTATGCAGCCATAAAAAGG 1 chr1:225232883-225233383 ( 59) CTATGCAGCCATAAAAAGG 1 chr3:191646218-191646718 ( 5) CTATACAGCTATGAAAAAG 1 chrX:75348547-75349047 ( 42) CTATGCAGCCATCAAAAAG 1 chr1:93910801-93911301 ( 66) CTATGCAGCCATCAAAAAG 1 chr5:17357437-17357937 ( 51) CTATACAGCCATGAAAAGG 1 chr19:29210450-29210950 ( 44) CTATGCAGCCATAAAAAAT 1 chr6:11956723-11957223 ( 73) CTATGCAGCCATGAAAAAT 1 chr3:187023315-187023815 ( 30) CTATGCAGCCATGAAAAAT 1 chr19:49945779-49946279 ( 53) CTATGCAGCCAGAAAAAAG 1 chr1:224932550-224933050 ( 72) CTACAAAGCTATAATAACC 1 chr19:34651657-34652157 ( 24) CTACAAAGCTATAGTAAAC 1 chr19:40080240-40080740 ( 49) CTATGCAACCATAAAAAAG 1 chrX:123722139-123722639 ( 38) CTATGCAACCATAAAAAAG 1 chr19:36690865-36691365 ( 11) TTATGCAGCCATGAAAAGG 1 chr19:3910056-3910556 ( 32) TTATGCAGCCATGAAAAGG 1 chr19:11631785-11632285 ( 21) CTATTCAGCCATGAAAAAG 1 chr15:70373340-70373840 ( 11) GTATGCAGCCATAAAAAAG 1 chrX:74701281-74701781 ( 36) CTATGCAGTCATGAAAAAG 1 chr1:40357545-40358045 ( 73) CTACAAAGCTATAGTAACC 1 chrX:79933878-79934378 ( 39) CTATGCAGCCCTGAAAAAG 1 chr12:1058344-1058844 ( 42) CTACAAAGCTATAGTAACC 1 chr15:67285574-67286074 ( 54) CTACAAAGCTATAGTAACC 1 chr8:99024414-99024914 ( 79) CTACAAAGCTATAGTAATC 1 chr6:151210996-151211496 ( 37) TTACAAAGCTATAGTAAAC 1 chr1:50905999-50906499 ( 72) CTACAAAGCTACAATAACC 1 chr18:8926411-8926911 ( 20) CTACAAAGCTACAATAATC 1 chr19:9668473-9668973 ( 42) CTACAAAGCTATCATAACC 1 chr3:171715097-171715597 ( 50) TTACAAAGCTATAGTAACC 1 chr1:233779994-233780494 ( 61) CTACAAAGCTACAGTAACC 1 chrX:1021417-1021917 ( 37) CTACACAGCCAGGAAAAGG 1 chr1:244500468-244500968 ( 69) CTACAAAGCTACAGTAACC 1 chr5:174479268-174479768 ( 34) TTACAAAGCTATAGTAATC 1 chr5:174362460-174362960 ( 62) TTATTCAGCCATGAAAAGG 1 chr5:69140760-69141260 ( 60) CTACAGAGCTACAATAACC 1 chrX:84796256-84796756 ( 35) CTATACAGTCAGGAAAAAG 1 chr12:21950590-21951090 ( 23) TTACAAAGCTACAGTAATC 1 chr15:68096052-68096552 ( 67) TTACAAAGCTACAGTAATC 1 chr19:12198085-12198585 ( 30) TTACAGAGCTATAGTAACC 1 chrX:149022410-149022910 ( 38) TTACAAAGCTACAGTAATC 1 chr1:7395189-7395689 ( 73) CAACAAAGCTATAATAATC 1 chr1:228188198-228188698 ( 51) CTACAGAGTTATAATAACC 1 chr20:21177709-21178209 ( 62) TTACAAAGCTACCATAATC 1 chr19:39987088-39987588 ( 53) TTACAAGGCTATGATAACC 1 chr15:70950905-70951405 ( 46) TTACAAAGCTACAGTAACT 1 chr15:81977454-81977954 ( 59) TTACAAAACTATAGTAATC 1 chr6:6950698-6951198 ( 46) TTACAAAACTATAGTAATC 1 chr5:32187615-32188115 ( 30) TTACAAAGCTACAGTAATT 1 chr1:50887500-50888000 ( 70) CTGCAAAGCTACAGTAACC 1 chr19:36898383-36898883 ( 24) CTACAAAGCTGTCGTAACC 1 chr6:3734994-3735494 ( 14) CGACAGAGCTACAGTAAAC 1 chr17:28262059-28262559 ( 37) TTATACAGTTGTGATAAGG 1 chr1:236261836-236262336 ( 49) TTACAAAGCTACTGTAATC 1 chr14:59063193-59063693 ( 24) GTACAAAGCTATAGTAGTC 1 chr19:3898382-3898882 ( 17) CTATTTAGCCCTGAAAAGG 1 chr10:74510998-74511498 ( 56) TCACAAAGCTATAATAACA 1 chr1:224914261-224914761 ( 37) CCAAACAGCTATCAAAAAT 1 chr19:44252246-44252746 ( 58) CTACAAGGCTACAGTAGCC 1 chr17:47320820-47321320 ( 41) CGACAAAGTTACAGTAATC 1 chr10:73166911-73167411 ( 79) CAACAGAGTTATAGTAACC 1 chr1:229354217-229354717 ( 55) TTGCAAAGCTATAGTAGTC 1 chr22:39276941-39277441 ( 51) TTACTTGGCCATGAAAAGG 1 chr10:87845992-87846492 ( 58) TTAAACAGCTCAAATAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 49200 bayes= 7.76985 E= 2.4e-298 -1326 167 -354 -23 -369 -354 -354 184 190 -1326 -354 -1326 -369 82 -1326 109 80 -1326 108 -269 31 135 -221 -369 188 -1326 -295 -1326 -269 -1326 202 -1326 -1326 199 -1326 -210 -1326 127 -1326 70 185 -295 -354 -1326 -468 -54 -295 160 133 -195 16 -468 146 -1326 22 -1326 119 -1326 -1326 60 193 -1326 -1326 -1326 188 -1326 -295 -1326 98 -22 -95 -78 -468 59 127 -210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 98 E= 2.4e-298 0.000000 0.755102 0.020408 0.224490 0.020408 0.020408 0.020408 0.938776 0.979592 0.000000 0.020408 0.000000 0.020408 0.418367 0.000000 0.561224 0.459184 0.000000 0.500000 0.040816 0.326531 0.602041 0.051020 0.020408 0.969388 0.000000 0.030612 0.000000 0.040816 0.000000 0.959184 0.000000 0.000000 0.938776 0.000000 0.061224 0.000000 0.571429 0.000000 0.428571 0.948980 0.030612 0.020408 0.000000 0.010204 0.163265 0.030612 0.795918 0.663265 0.061224 0.265306 0.010204 0.724490 0.000000 0.275510 0.000000 0.602041 0.000000 0.000000 0.397959 1.000000 0.000000 0.000000 0.000000 0.969388 0.000000 0.030612 0.000000 0.520408 0.204082 0.122449 0.153061 0.010204 0.357143 0.571429 0.061224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAYRMAGCYATAAWAAAS MEME-2 regular expression -------------------------------------------------------------------------------- [CT]TA[TC][GA][CA]AGC[CT]AT[AG][AG][AT]AA[AC][GC] -------------------------------------------------------------------------------- Time 751.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTYYTTTGYAGRGACATGGAT MEME-3 width = 22 sites = 67 llr = 1432 E-value = 4.7e-325 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:::::3::a:31a:8:1:7: pos.-specific C :::67::::5::1::9:::::: probability G :7::::::9::a69::239a:: matrix T a:a33aa7:5:::::1:6::39 bits 2.1 * 1.9 ** * * 1.7 * * ** * ** ** ** * 1.5 * * ** * ** *** ** * Relative 1.2 * * ** * ** **** ** * Entropy 1.0 ******* * ** **** ** * (30.8 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGTCCTTTGCAGGGACATGGAT consensus A TT A T A GG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:233827818-233828318 + 51 5.52e-14 gatgagttca tgtcctttgcagggacatggat gaagctggaa chr1:244562804-244563304 - 33 5.52e-14 GCTGAATTCA TGTCCTTTGCAGGGACATGGAT AAAGCTGGAA chr1:225310530-225311030 - 20 5.52e-14 GATGAGCTCA TGTCCTTTGCAGGGACATGGAT ATGCCTGGAA chr19:30290742-30291242 - 49 5.52e-14 GATGAGTTCA TGTCCTTTGCAGGGACATGGAT GAAGCTGGAA chrX:19511736-19512236 + 71 5.52e-14 gatgagttca tgtcctttgcagggacatggat gaagctgg chr1:232156048-232156548 + 9 5.52e-14 taagttca tgtcctttgcagggacatggat gaagctggaa chrX:823013-823513 - 9 5.52e-14 GATGAGTTCA TGTCCTTTGCAGGGACATGGAT GAAGCTGG chr19:30398482-30398982 - 10 5.52e-14 TGGATGATCA TGTCCTTTGCAGGGACATGGAT GAAGCTGAA chrX:88007833-88008333 - 19 5.52e-14 GATGAGTTCA TGTCCTTTGCAGGGACATGGAT GAAACTGAAA chr19:44253352-44253852 + 38 5.52e-14 gattaattca tgtcctttgcagggacatggat gaagctggaa chr10:74457453-74457953 + 53 5.52e-14 gatgagttca tgtcctttgcagggacatggat aaatctggaa chrX:123722139-123722639 + 67 5.52e-14 gatgagttca tgtcctttgcagggacatggat gaagctggaa chr1:236186397-236186897 - 43 5.52e-14 GATGAGTTCA TGTCCTTTGCAGGGACATGGAT GAAGCTGGAA chr12:101559874-10156037 - 50 5.52e-14 AATGAGATCA TGTCCTTTGCAGGGACATGGAT GAAGCTGGAA chr7:100940646-100941146 - 64 5.52e-14 GATGAGTTCA TGTCCTTTGCAGGGACATGGAT GAAGCTGGAA chr3:176093856-176094356 + 61 5.52e-14 gataagttca tgtcctttgcagggacatggat gaagctggaa chr19:49945779-49946279 - 23 5.52e-14 AGGATGATCA TGTCCTTTGCAGGGACATGGAT GGAGCCGGAA chr15:70373340-70373840 + 40 5.52e-14 gatgagttca tgtcctttgcagggacatggat gaagctggaa chr1:226431886-226432386 + 67 1.16e-13 gatgagttca tgtcctttgtagggacatggat gaatctggaa chr20:45657027-45657527 + 45 1.16e-13 gatgagttca tgtcctttgtagggacatggat gaagctagaa chr19:29210450-29210950 - 12 1.16e-13 GATGAGTTCA TGTCCTTTGTAGGGACATGGAT GAAATTGGAA chr1:223283671-223284171 + 49 1.16e-13 gatgagttca tgtcctttgtagggacatggat gaagctgaaa chr1:225232883-225233383 - 27 4.67e-13 AATGAGATCA TGTCCTTTGCAGGGACATGGTT GGAGCTGGAA chr19:40964262-40964762 - 50 9.07e-12 GATGAGTTCA TGTCCTTTGTAGCGACATGGAT GAAGCTGGAA chrX:75348547-75349047 - 10 1.03e-11 GATGAGTTCA TGTCCTTTGCAGGGACATAGAT GAAGCTGGA chr12:46973879-46974379 - 15 1.30e-11 GATGAGTTCA TGTCCTTTGAAGGGACATGGAT GAAGCTGGAA chr17:46921945-46922445 + 27 1.59e-11 gatgagttca tgtcctttgtagggacacggat gaagctggaa chr1:234762065-234762565 - 16 1.59e-11 GATGAGTTCA TGCCCTTTGTAGGGACATGGAT GAAGCTGGAA chr19:37076452-37076952 - 24 1.81e-11 GATGAGTTCA TGTCCTTTATAGGGACATGGAT AAAGCTGGAA chr1:231948061-231948561 + 33 2.23e-11 gataagttca tgtcctttgcagggagatggat gaagctcgaa chr6:78665769-78666269 - 1 2.42e-11 GATGAGTTCA TGTCCTTTGTAGGGAGATGGAT chr3:187023315-187023815 + 59 2.42e-11 gatgagttca cgtcctttgtagggacatggat gaagctggaa chr3:191646218-191646718 + 33 2.42e-11 gacaaaatca tgtcctttgcagaaacatggat ggagctagag chr5:38516646-38517146 + 50 2.64e-11 gatgagttca tgtcctttgcagggacatgaat gaagttggaa chr19:40091681-40092181 + 45 3.54e-11 gatgagttca tgtcgtttgtagggacatggat gaagctggaa chr6:107027736-107028236 - 16 5.45e-11 AATTTTTTTG TGTTTTTAGCAGAGACAGGGTT TCACCGTTTT chr1:241425043-241425543 - 40 6.06e-11 GATGGGTTCA TATCCTTTGCGGGGACATGGAT GAAGCTGGAA chr6:11956723-11957223 - 40 1.40e-10 AATGACATAA TGTCCTTTGCAGCAACATGGAT GCAGCTGGAG chr5:17357437-17357937 - 19 1.40e-10 GATGAGATCA TGTCCTTTGCAGCAACATGGAT AGAGGTGGAG chr7:139339837-139340337 + 19 1.69e-10 gctaattctg tatttttagtagagacagggtt tctctgtgtt chr20:35616566-35617066 + 37 1.69e-10 ccaatttttg tgtttttagtagagacggggtt tctccgtgtt chr19:36070082-36070582 + 50 1.69e-10 ctaatttttg tatttttagtagagacagggtt ttaccatgtt chrX:78225968-78226468 - 37 1.87e-10 GATGAGTTCA TGTCCTTTGCAGGGACACAGAT GAAGCTGGAA chrX:84796256-84796756 + 64 2.68e-10 aacaaggtaa tgttctttgcagcaacatggat ggaagtggag chr6:115940964-115941464 + 18 2.91e-10 gatgagttca tgtccttcacagggacatggat aaagctggaa chr17:2652854-2653354 + 55 3.16e-10 gatgagtttg tgccctttatagggacatggat gaagctggaa chr1:37554333-37554833 - 14 4.03e-10 CTAATTTTTG TATTTTTAGTAGAGACGGGGTT TTGCCATGTT chr22:37844476-37844976 + 67 4.03e-10 ctaatttttg tatttttagtagagacggggtt tcaccatgtt chr19:44259451-44259951 + 21 4.03e-10 ctaatttttg tatttttagtagagacggggtt tcaccatgtt chr5:177599256-177599756 + 75 4.03e-10 taattttttg tatttttagtagagacggggtt tcac chr5:140719038-140719538 - 16 4.03e-10 AATTTTTTTG TATTTTTAGTAGAGACGGGGTT TCACCGGGTT chr1:46990480-46990980 + 59 6.34e-10 gatgagttca tgtccttcccagggacatggat gaagctggaa chrX:79933878-79934378 + 68 6.84e-10 aatgagatca tgtcctttgaagggacatgtat gaagctggaa chr17:4143133-4143633 - 17 9.30e-10 GCTAATATTT TGTATTTAGTAGAGACAGGGTT TCACCACGTT chr17:8200234-8200734 - 76 2.69e-09 TTG TATTTTTAGTAGAGATGGGGTT TCACTGTGTT chr22:36482231-36482731 + 70 2.69e-09 ctgatttttg tatttttagtagagacggagtt tcgccatgt chr19:42760495-42760995 + 62 4.06e-09 taattttttg tatttttagtagagacgaggtt tcaccatgtt chr8:144767168-144767668 + 18 4.33e-09 taattttttt ggttctttgtagagacagggtc tcactctgtt chr22:42089743-42090243 - 59 5.24e-09 TTTTTTTTTG TATTTTTAGTAGAGACGGGATT TCACCGTGTT chr1:150320910-150321410 - 5 7.15e-09 TGATTTTTTG TATTTTTAGTAGAGCCGGGGTT TCAC chr1:109216581-109217081 + 15 8.08e-09 ctaatgtgtg tattttttgtagagatggagtt tcgtcatgtt chr4:56977752-56978252 - 54 1.03e-08 TAATTTTTTG TATTTTTAGCAGAGATGGGGGT TTCACCGTGT chrX:83990098-83990598 + 74 1.10e-08 tgagttcatg tcctttttgcagggacatggac gaaga chr1:156337027-156337527 - 4 1.58e-08 CTAATTTTTG TATTTTTGGTAGAGACGGAGTT TCA chr5:140402880-140403380 + 62 7.58e-08 actaattttg tatttttattagatacggggtt tcaccatgtt chr12:124922433-12492293 + 79 9.28e-08 ctaatttctg tatttttagtagagatgggggg chr1:9164190-9164690 - 29 2.70e-07 TTAAGTTTTG CATTTTTAGTGGAGATAGGGTC TTGTCATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:233827818-233828318 5.5e-14 50_[+3]_28 chr1:244562804-244563304 5.5e-14 32_[-3]_46 chr1:225310530-225311030 5.5e-14 19_[-3]_59 chr19:30290742-30291242 5.5e-14 48_[-3]_30 chrX:19511736-19512236 5.5e-14 70_[+3]_8 chr1:232156048-232156548 5.5e-14 8_[+3]_70 chrX:823013-823513 5.5e-14 8_[-3]_70 chr19:30398482-30398982 5.5e-14 9_[-3]_69 chrX:88007833-88008333 5.5e-14 18_[-3]_60 chr19:44253352-44253852 5.5e-14 37_[+3]_41 chr10:74457453-74457953 5.5e-14 52_[+3]_26 chrX:123722139-123722639 5.5e-14 66_[+3]_12 chr1:236186397-236186897 5.5e-14 42_[-3]_36 chr12:101559874-10156037 5.5e-14 49_[-3]_29 chr7:100940646-100941146 5.5e-14 63_[-3]_15 chr3:176093856-176094356 5.5e-14 60_[+3]_18 chr19:49945779-49946279 5.5e-14 22_[-3]_56 chr15:70373340-70373840 5.5e-14 39_[+3]_39 chr1:226431886-226432386 1.2e-13 66_[+3]_12 chr20:45657027-45657527 1.2e-13 44_[+3]_34 chr19:29210450-29210950 1.2e-13 11_[-3]_67 chr1:223283671-223284171 1.2e-13 48_[+3]_30 chr1:225232883-225233383 4.7e-13 26_[-3]_52 chr19:40964262-40964762 9.1e-12 49_[-3]_29 chrX:75348547-75349047 1e-11 9_[-3]_69 chr12:46973879-46974379 1.3e-11 14_[-3]_64 chr17:46921945-46922445 1.6e-11 26_[+3]_52 chr1:234762065-234762565 1.6e-11 15_[-3]_63 chr19:37076452-37076952 1.8e-11 23_[-3]_55 chr1:231948061-231948561 2.2e-11 32_[+3]_46 chr6:78665769-78666269 2.4e-11 [-3]_78 chr3:187023315-187023815 2.4e-11 58_[+3]_20 chr3:191646218-191646718 2.4e-11 32_[+3]_46 chr5:38516646-38517146 2.6e-11 49_[+3]_29 chr19:40091681-40092181 3.5e-11 44_[+3]_34 chr6:107027736-107028236 5.5e-11 15_[-3]_63 chr1:241425043-241425543 6.1e-11 39_[-3]_39 chr6:11956723-11957223 1.4e-10 39_[-3]_39 chr5:17357437-17357937 1.4e-10 18_[-3]_60 chr7:139339837-139340337 1.7e-10 18_[+3]_60 chr20:35616566-35617066 1.7e-10 36_[+3]_42 chr19:36070082-36070582 1.7e-10 49_[+3]_29 chrX:78225968-78226468 1.9e-10 36_[-3]_42 chrX:84796256-84796756 2.7e-10 63_[+3]_15 chr6:115940964-115941464 2.9e-10 17_[+3]_61 chr17:2652854-2653354 3.2e-10 54_[+3]_24 chr1:37554333-37554833 4e-10 13_[-3]_65 chr22:37844476-37844976 4e-10 66_[+3]_12 chr19:44259451-44259951 4e-10 20_[+3]_58 chr5:177599256-177599756 4e-10 74_[+3]_4 chr5:140719038-140719538 4e-10 15_[-3]_63 chr1:46990480-46990980 6.3e-10 58_[+3]_20 chrX:79933878-79934378 6.8e-10 67_[+3]_11 chr17:4143133-4143633 9.3e-10 16_[-3]_62 chr17:8200234-8200734 2.7e-09 75_[-3]_3 chr22:36482231-36482731 2.7e-09 69_[+3]_9 chr19:42760495-42760995 4.1e-09 61_[+3]_17 chr8:144767168-144767668 4.3e-09 17_[+3]_61 chr22:42089743-42090243 5.2e-09 58_[-3]_20 chr1:150320910-150321410 7.2e-09 4_[-3]_74 chr1:109216581-109217081 8.1e-09 14_[+3]_64 chr4:56977752-56978252 1e-08 53_[-3]_25 chrX:83990098-83990598 1.1e-08 73_[+3]_5 chr1:156337027-156337527 1.6e-08 3_[-3]_75 chr5:140402880-140403380 7.6e-08 61_[+3]_17 chr12:124922433-12492293 9.3e-08 78_[+3] chr1:9164190-9164690 2.7e-07 28_[-3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTYYTTTGYAGRGACATGGAT width=22 seqs=67 chr1:233827818-233828318 ( 51) TGTCCTTTGCAGGGACATGGAT 1 chr1:244562804-244563304 ( 33) TGTCCTTTGCAGGGACATGGAT 1 chr1:225310530-225311030 ( 20) TGTCCTTTGCAGGGACATGGAT 1 chr19:30290742-30291242 ( 49) TGTCCTTTGCAGGGACATGGAT 1 chrX:19511736-19512236 ( 71) TGTCCTTTGCAGGGACATGGAT 1 chr1:232156048-232156548 ( 9) TGTCCTTTGCAGGGACATGGAT 1 chrX:823013-823513 ( 9) TGTCCTTTGCAGGGACATGGAT 1 chr19:30398482-30398982 ( 10) TGTCCTTTGCAGGGACATGGAT 1 chrX:88007833-88008333 ( 19) TGTCCTTTGCAGGGACATGGAT 1 chr19:44253352-44253852 ( 38) TGTCCTTTGCAGGGACATGGAT 1 chr10:74457453-74457953 ( 53) TGTCCTTTGCAGGGACATGGAT 1 chrX:123722139-123722639 ( 67) TGTCCTTTGCAGGGACATGGAT 1 chr1:236186397-236186897 ( 43) TGTCCTTTGCAGGGACATGGAT 1 chr12:101559874-10156037 ( 50) TGTCCTTTGCAGGGACATGGAT 1 chr7:100940646-100941146 ( 64) TGTCCTTTGCAGGGACATGGAT 1 chr3:176093856-176094356 ( 61) TGTCCTTTGCAGGGACATGGAT 1 chr19:49945779-49946279 ( 23) TGTCCTTTGCAGGGACATGGAT 1 chr15:70373340-70373840 ( 40) TGTCCTTTGCAGGGACATGGAT 1 chr1:226431886-226432386 ( 67) TGTCCTTTGTAGGGACATGGAT 1 chr20:45657027-45657527 ( 45) TGTCCTTTGTAGGGACATGGAT 1 chr19:29210450-29210950 ( 12) TGTCCTTTGTAGGGACATGGAT 1 chr1:223283671-223284171 ( 49) TGTCCTTTGTAGGGACATGGAT 1 chr1:225232883-225233383 ( 27) TGTCCTTTGCAGGGACATGGTT 1 chr19:40964262-40964762 ( 50) TGTCCTTTGTAGCGACATGGAT 1 chrX:75348547-75349047 ( 10) TGTCCTTTGCAGGGACATAGAT 1 chr12:46973879-46974379 ( 15) TGTCCTTTGAAGGGACATGGAT 1 chr17:46921945-46922445 ( 27) TGTCCTTTGTAGGGACACGGAT 1 chr1:234762065-234762565 ( 16) TGCCCTTTGTAGGGACATGGAT 1 chr19:37076452-37076952 ( 24) TGTCCTTTATAGGGACATGGAT 1 chr1:231948061-231948561 ( 33) TGTCCTTTGCAGGGAGATGGAT 1 chr6:78665769-78666269 ( 1) TGTCCTTTGTAGGGAGATGGAT 1 chr3:187023315-187023815 ( 59) CGTCCTTTGTAGGGACATGGAT 1 chr3:191646218-191646718 ( 33) TGTCCTTTGCAGAAACATGGAT 1 chr5:38516646-38517146 ( 50) TGTCCTTTGCAGGGACATGAAT 1 chr19:40091681-40092181 ( 45) TGTCGTTTGTAGGGACATGGAT 1 chr6:107027736-107028236 ( 16) TGTTTTTAGCAGAGACAGGGTT 1 chr1:241425043-241425543 ( 40) TATCCTTTGCGGGGACATGGAT 1 chr6:11956723-11957223 ( 40) TGTCCTTTGCAGCAACATGGAT 1 chr5:17357437-17357937 ( 19) TGTCCTTTGCAGCAACATGGAT 1 chr7:139339837-139340337 ( 19) TATTTTTAGTAGAGACAGGGTT 1 chr20:35616566-35617066 ( 37) TGTTTTTAGTAGAGACGGGGTT 1 chr19:36070082-36070582 ( 50) TATTTTTAGTAGAGACAGGGTT 1 chrX:78225968-78226468 ( 37) TGTCCTTTGCAGGGACACAGAT 1 chrX:84796256-84796756 ( 64) TGTTCTTTGCAGCAACATGGAT 1 chr6:115940964-115941464 ( 18) TGTCCTTCACAGGGACATGGAT 1 chr17:2652854-2653354 ( 55) TGCCCTTTATAGGGACATGGAT 1 chr1:37554333-37554833 ( 14) TATTTTTAGTAGAGACGGGGTT 1 chr22:37844476-37844976 ( 67) TATTTTTAGTAGAGACGGGGTT 1 chr19:44259451-44259951 ( 21) TATTTTTAGTAGAGACGGGGTT 1 chr5:177599256-177599756 ( 75) TATTTTTAGTAGAGACGGGGTT 1 chr5:140719038-140719538 ( 16) TATTTTTAGTAGAGACGGGGTT 1 chr1:46990480-46990980 ( 59) TGTCCTTCCCAGGGACATGGAT 1 chrX:79933878-79934378 ( 68) TGTCCTTTGAAGGGACATGTAT 1 chr17:4143133-4143633 ( 17) TGTATTTAGTAGAGACAGGGTT 1 chr17:8200234-8200734 ( 76) TATTTTTAGTAGAGATGGGGTT 1 chr22:36482231-36482731 ( 70) TATTTTTAGTAGAGACGGAGTT 1 chr19:42760495-42760995 ( 62) TATTTTTAGTAGAGACGAGGTT 1 chr8:144767168-144767668 ( 18) GGTTCTTTGTAGAGACAGGGTC 1 chr22:42089743-42090243 ( 59) TATTTTTAGTAGAGACGGGATT 1 chr1:150320910-150321410 ( 5) TATTTTTAGTAGAGCCGGGGTT 1 chr1:109216581-109217081 ( 15) TATTTTTTGTAGAGATGGAGTT 1 chr4:56977752-56978252 ( 54) TATTTTTAGCAGAGATGGGGGT 1 chrX:83990098-83990598 ( 74) TCCTTTTTGCAGGGACATGGAC 1 chr1:156337027-156337527 ( 4) TATTTTTGGTAGAGACGGAGTT 1 chr5:140402880-140403380 ( 62) TATTTTTATTAGATACGGGGTT 1 chr12:124922433-12492293 ( 79) TATTTTTAGTAGAGATGGGGGG 1 chr1:9164190-9164690 ( 29) CATTTTTAGTGGAGATAGGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.51717 E= 4.7e-325 -1271 -299 -399 186 11 -399 157 -1271 -1271 -240 -1271 186 -414 144 -1271 38 -1271 147 -399 32 -1271 -1271 -1271 193 -1271 -1271 -1271 193 11 -299 -399 135 -255 -399 197 -414 -314 106 -1271 86 188 -1271 -299 -1271 -1271 -1271 208 -1271 38 -199 133 -1271 -214 -1271 197 -414 190 -399 -1271 -1271 -1271 192 -299 -182 153 -1271 1 -1271 -414 -299 40 129 -182 -1271 197 -1271 -314 -1271 201 -414 132 -1271 -299 25 -1271 -240 -399 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 67 E= 4.7e-325 0.000000 0.029851 0.014925 0.955224 0.283582 0.014925 0.701493 0.000000 0.000000 0.044776 0.000000 0.955224 0.014925 0.641791 0.000000 0.343284 0.000000 0.656716 0.014925 0.328358 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.283582 0.029851 0.014925 0.671642 0.044776 0.014925 0.925373 0.014925 0.029851 0.492537 0.000000 0.477612 0.970149 0.000000 0.029851 0.000000 0.000000 0.000000 1.000000 0.000000 0.343284 0.059701 0.597015 0.000000 0.059701 0.000000 0.925373 0.014925 0.985075 0.014925 0.000000 0.000000 0.000000 0.895522 0.029851 0.074627 0.761194 0.000000 0.238806 0.000000 0.014925 0.029851 0.313433 0.641791 0.074627 0.000000 0.925373 0.000000 0.029851 0.000000 0.955224 0.014925 0.656716 0.000000 0.029851 0.313433 0.000000 0.044776 0.014925 0.940299 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTYYTTTGYAGRGACATGGAT MEME-3 regular expression -------------------------------------------------------------------------------- T[GA]T[CT][CT]TT[TA]G[CT]AG[GA]GAC[AG][TG]GG[AT]T -------------------------------------------------------------------------------- Time 1081.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 width = 31 sites = 35 llr = 1095 E-value = 5.5e-268 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:1:1:::::7:3:192:8::a:3:::::: pos.-specific C :118:1:1::1:1:89::::aa:::a::::: probability G 17:1:8:1::11:7::18:2::::7::a::: matrix T 91919:a899819:11::9::::a::9:aaa bits 2.1 * * 1.9 ** * * ** 1.7 * ** * * **** * **** 1.5 * * * * ** * ** * **** ****** Relative 1.2 * * * * ** * ** ****** ****** Entropy 1.0 * ********* ******************* (45.1 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TGTCTGTTTTTATGCCAGTACCATGCTGTTT consensus A G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr5:69140760-69141260 + 28 1.23e-18 ttggtctatg tgtctgtttttatgccagtgccatgctgttt tggttattgt chr1:236261836-236262336 - 69 2.17e-18 G TGTCTATTTTTATGCCAGTACCATGCTGTTT TGATTACAGT chr1:228188198-228188698 + 19 2.17e-18 ttggcctatg tgtctatttttatgccagtaccatgctgttt tggttattat chr12:21950590-21951090 - 43 3.44e-18 TTGGTCTTTG TGTCTGTTTTTATGCCAGTGCCATACTGTTT TGATTACTGT chr5:32187615-32188115 - 50 1.05e-17 TATTGGTTTA TGTCTGTTTTTATGTCAGTACCATACTGTTT TAATTACTGT chr19:34651657-34652157 - 44 1.41e-17 CTGGTCTATG TGTCTGTTTTTATGCAAGTACCATGCTGTTT TGTTTACTAT chr1:231457941-231458441 - 17 1.87e-17 CTGACATATG TGTCTGTTTTCATACCAGTACCATGCTGTTT TGATTACTAT chr3:171715097-171715597 + 18 2.76e-17 actggtcatg tgtctgtttttataccaataccatactgttt tggttactat chr19:43949751-43950251 - 18 3.96e-17 TTGGTCTCTG TGTCTGTTTTTATGCCAGTACTATGCTGTTT TGGTTATTAT chr6:6950698-6951198 - 66 6.34e-17 GTCA TGTCTGTTTTTATGCCACTACCATACTGTTT TGATTACTAT chr20:21177709-21178209 + 30 8.67e-17 ttggtctata tgtctgtctttatgccaataccatactgttt tgattatggt chr12:1058344-1058844 + 10 8.67e-17 tggtctatg tgtctgtttttataccagcaccatgctgttt tggttactat chr5:174479268-174479768 - 54 1.12e-16 TTGGTCTACA TGTCTGTTTTTATGCCAGTACCATATTGTTT TGATTACTAT chr15:70950905-70951405 + 14 2.34e-16 ttggtccatg tttctgttttcataccagtaccatgctgttt cagttactgt chr6:3734994-3735494 - 34 2.63e-16 CATTGGTCTA TGTGTCTTTTTATGCCAGTACCATGCTGTTT TGTTTACTGT chr10:74510998-74511498 + 24 3.67e-16 ttggtctata tgtctgtttttatgctggtaccatgctgttt gtgttattat chr2:148221865-148222365 + 54 3.67e-16 ttggtctaca tgtgtgtttttatgtcagtgccatgctgttt tgattactat chr10:73166911-73167411 + 47 4.46e-16 ctctattctg ttcctgtttttatgccagtgccatgctgttt tggttactat chr8:99024414-99024914 + 47 7.70e-16 ctggtctgta tgtctgttcttatgcaagtaccatgctgttt tgattactat chr1:233779994-233780494 + 29 2.07e-15 ttgatccatg tgtctatttttacatcagtaccatgctgttt tggttactgt chr1:50887500-50888000 + 38 2.25e-15 ttggtctata tctctgttttggtaccagtaccatgctgttt tggttactgt chr1:50905999-50906499 + 40 2.25e-15 ttggtctaca tctctgttttggtaccagtaccatgctgttt tggttattgt chr19:36898383-36898883 - 44 2.67e-15 TTGGTCTTTG GGTCTATTTTTATGACAGTACCATGCTGTTT TGGTTACGAC chr1:244500468-244500968 + 37 3.26e-15 ttggtctata tatctgttttgttaccagtaccatgctgttt tggttactgt chr1:224932550-224933050 + 40 9.77e-15 ttggtctgtg tgtctgtttttataccattgccatgcagttt gggttattat chr1:40357545-40358045 + 41 1.38e-14 tttgtctata tgtccatttttgtgccaatgccatgctgttt tggttactat chrX:149022410-149022910 - 58 1.38e-14 TTGGTCTATG TGTCTGTTTCTGTGCCAGTACCGTACTGTTT TGATTACTGT chr1:7395189-7395689 + 41 1.67e-13 ttcgtctata tgtctgtgtttatggtggtgccatgctgttt tgattattat chr18:8926411-8926911 - 40 2.79e-13 TTGGTCTATG TATCTGTCTTCTTGCCAGTACCATACCGTTT TGATTATTGT chr1:229354217-229354717 + 23 4.29e-13 ttggtctata tgtctgactttttgcccataccatactgttt tgactactat chr1:227574846-227575346 + 57 4.93e-13 attccattgg tatatgtgtttgttccaataccatgctgttt tggttattgt chr15:67285574-67286074 + 22 1.46e-12 tctctattct gttctgttggtctaccagtaccatgctgttt tggttactat chr15:68096052-68096552 + 35 2.17e-12 tccattggtc tgtatgtctttatgtcaagaccacactgttt tgattactgt chr19:9668473-9668973 - 62 4.59e-12 GTGTTTGT TTGTTTTTTTTATGTCAGTACCATGCTGATT TGGTTATGAT chr1:63461573-63462073 + 54 2.50e-10 tggtctctat ggctactgttaacgccagtgccatactgttt tgatgactgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:69140760-69141260 1.2e-18 27_[+4]_42 chr1:236261836-236262336 2.2e-18 68_[-4]_1 chr1:228188198-228188698 2.2e-18 18_[+4]_51 chr12:21950590-21951090 3.4e-18 42_[-4]_27 chr5:32187615-32188115 1e-17 49_[-4]_20 chr19:34651657-34652157 1.4e-17 43_[-4]_26 chr1:231457941-231458441 1.9e-17 16_[-4]_53 chr3:171715097-171715597 2.8e-17 17_[+4]_52 chr19:43949751-43950251 4e-17 17_[-4]_52 chr6:6950698-6951198 6.3e-17 65_[-4]_4 chr20:21177709-21178209 8.7e-17 29_[+4]_40 chr12:1058344-1058844 8.7e-17 9_[+4]_60 chr5:174479268-174479768 1.1e-16 53_[-4]_16 chr15:70950905-70951405 2.3e-16 13_[+4]_56 chr6:3734994-3735494 2.6e-16 33_[-4]_36 chr10:74510998-74511498 3.7e-16 23_[+4]_46 chr2:148221865-148222365 3.7e-16 53_[+4]_16 chr10:73166911-73167411 4.5e-16 46_[+4]_23 chr8:99024414-99024914 7.7e-16 46_[+4]_23 chr1:233779994-233780494 2.1e-15 28_[+4]_41 chr1:50887500-50888000 2.2e-15 37_[+4]_32 chr1:50905999-50906499 2.2e-15 39_[+4]_30 chr19:36898383-36898883 2.7e-15 43_[-4]_26 chr1:244500468-244500968 3.3e-15 36_[+4]_33 chr1:224932550-224933050 9.8e-15 39_[+4]_30 chr1:40357545-40358045 1.4e-14 40_[+4]_29 chrX:149022410-149022910 1.4e-14 57_[-4]_12 chr1:7395189-7395689 1.7e-13 40_[+4]_29 chr18:8926411-8926911 2.8e-13 39_[-4]_30 chr1:229354217-229354717 4.3e-13 22_[+4]_47 chr1:227574846-227575346 4.9e-13 56_[+4]_13 chr15:67285574-67286074 1.5e-12 21_[+4]_48 chr15:68096052-68096552 2.2e-12 34_[+4]_35 chr19:9668473-9668973 4.6e-12 61_[-4]_8 chr1:63461573-63462073 2.5e-10 53_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCTGTTTTTATGCCAGTACCATGCTGTTT width=31 seqs=35 chr5:69140760-69141260 ( 28) TGTCTGTTTTTATGCCAGTGCCATGCTGTTT 1 chr1:236261836-236262336 ( 69) TGTCTATTTTTATGCCAGTACCATGCTGTTT 1 chr1:228188198-228188698 ( 19) TGTCTATTTTTATGCCAGTACCATGCTGTTT 1 chr12:21950590-21951090 ( 43) TGTCTGTTTTTATGCCAGTGCCATACTGTTT 1 chr5:32187615-32188115 ( 50) TGTCTGTTTTTATGTCAGTACCATACTGTTT 1 chr19:34651657-34652157 ( 44) TGTCTGTTTTTATGCAAGTACCATGCTGTTT 1 chr1:231457941-231458441 ( 17) TGTCTGTTTTCATACCAGTACCATGCTGTTT 1 chr3:171715097-171715597 ( 18) TGTCTGTTTTTATACCAATACCATACTGTTT 1 chr19:43949751-43950251 ( 18) TGTCTGTTTTTATGCCAGTACTATGCTGTTT 1 chr6:6950698-6951198 ( 66) TGTCTGTTTTTATGCCACTACCATACTGTTT 1 chr20:21177709-21178209 ( 30) TGTCTGTCTTTATGCCAATACCATACTGTTT 1 chr12:1058344-1058844 ( 10) TGTCTGTTTTTATACCAGCACCATGCTGTTT 1 chr5:174479268-174479768 ( 54) TGTCTGTTTTTATGCCAGTACCATATTGTTT 1 chr15:70950905-70951405 ( 14) TTTCTGTTTTCATACCAGTACCATGCTGTTT 1 chr6:3734994-3735494 ( 34) TGTGTCTTTTTATGCCAGTACCATGCTGTTT 1 chr10:74510998-74511498 ( 24) TGTCTGTTTTTATGCTGGTACCATGCTGTTT 1 chr2:148221865-148222365 ( 54) TGTGTGTTTTTATGTCAGTGCCATGCTGTTT 1 chr10:73166911-73167411 ( 47) TTCCTGTTTTTATGCCAGTGCCATGCTGTTT 1 chr8:99024414-99024914 ( 47) TGTCTGTTCTTATGCAAGTACCATGCTGTTT 1 chr1:233779994-233780494 ( 29) TGTCTATTTTTACATCAGTACCATGCTGTTT 1 chr1:50887500-50888000 ( 38) TCTCTGTTTTGGTACCAGTACCATGCTGTTT 1 chr1:50905999-50906499 ( 40) TCTCTGTTTTGGTACCAGTACCATGCTGTTT 1 chr19:36898383-36898883 ( 44) GGTCTATTTTTATGACAGTACCATGCTGTTT 1 chr1:244500468-244500968 ( 37) TATCTGTTTTGTTACCAGTACCATGCTGTTT 1 chr1:224932550-224933050 ( 40) TGTCTGTTTTTATACCATTGCCATGCAGTTT 1 chr1:40357545-40358045 ( 41) TGTCCATTTTTGTGCCAATGCCATGCTGTTT 1 chrX:149022410-149022910 ( 58) TGTCTGTTTCTGTGCCAGTACCGTACTGTTT 1 chr1:7395189-7395689 ( 41) TGTCTGTGTTTATGGTGGTGCCATGCTGTTT 1 chr18:8926411-8926911 ( 40) TATCTGTCTTCTTGCCAGTACCATACCGTTT 1 chr1:229354217-229354717 ( 23) TGTCTGACTTTTTGCCCATACCATACTGTTT 1 chr1:227574846-227575346 ( 57) TATATGTGTTTGTTCCAATACCATGCTGTTT 1 chr15:67285574-67286074 ( 22) GTTCTGTTGGTCTACCAGTACCATGCTGTTT 1 chr15:68096052-68096552 ( 35) TGTATGTCTTTATGTCAAGACCACACTGTTT 1 chr19:9668473-9668973 ( 62) TTGTTTTTTTTATGTCAGTACCATGCTGATT 1 chr1:63461573-63462073 ( 54) GGCTACTGTTAACGCCAGTGCCATACTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 10.3302 E= 5.5e-268 -1177 -1177 -147 180 -162 -205 165 -120 -1177 -205 -305 180 -220 181 -205 -220 -320 -305 -1177 184 -88 -205 170 -320 -320 -1177 -1177 188 -1177 -105 -147 160 -1177 -305 -305 184 -1177 -305 -305 184 -320 -147 -147 160 150 -305 -73 -162 -1177 -205 -1177 184 12 -1177 153 -320 -320 176 -305 -88 -220 190 -1177 -220 180 -305 -205 -1177 -62 -305 170 -320 -1177 -305 -305 184 155 -1177 -5 -1177 -1177 208 -1177 -1177 -1177 204 -1177 -320 188 -1177 -305 -1177 -1177 -305 -1177 188 26 -1177 153 -1177 -1177 204 -1177 -320 -320 -305 -1177 184 -1177 -1177 208 -1177 -320 -1177 -1177 188 -1177 -1177 -1177 193 -1177 -1177 -1177 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 35 E= 5.5e-268 0.000000 0.000000 0.085714 0.914286 0.085714 0.057143 0.742857 0.114286 0.000000 0.057143 0.028571 0.914286 0.057143 0.828571 0.057143 0.057143 0.028571 0.028571 0.000000 0.942857 0.142857 0.057143 0.771429 0.028571 0.028571 0.000000 0.000000 0.971429 0.000000 0.114286 0.085714 0.800000 0.000000 0.028571 0.028571 0.942857 0.000000 0.028571 0.028571 0.942857 0.028571 0.085714 0.085714 0.800000 0.742857 0.028571 0.142857 0.085714 0.000000 0.057143 0.000000 0.942857 0.285714 0.000000 0.685714 0.028571 0.028571 0.800000 0.028571 0.142857 0.057143 0.885714 0.000000 0.057143 0.914286 0.028571 0.057143 0.000000 0.171429 0.028571 0.771429 0.028571 0.000000 0.028571 0.028571 0.942857 0.771429 0.000000 0.228571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.971429 0.000000 0.028571 0.971429 0.000000 0.028571 0.000000 0.000000 0.028571 0.000000 0.971429 0.314286 0.000000 0.685714 0.000000 0.000000 0.971429 0.000000 0.028571 0.028571 0.028571 0.000000 0.942857 0.000000 0.000000 1.000000 0.000000 0.028571 0.000000 0.000000 0.971429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCTGTTTTTATGCCAGTACCATGCTGTTT MEME-4 regular expression -------------------------------------------------------------------------------- TGTCTGTTTTTAT[GA]CCAGT[AG]CCAT[GA]CTGTTT -------------------------------------------------------------------------------- Time 1408.23 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGCGTGGTGGCKCRCGCCTG MEME-5 width = 22 sites = 45 llr = 1058 E-value = 2.8e-238 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :211:2:::::::::4:2:::: pos.-specific C 8:::8:2:::::9:8:8:aa:: probability G :889:8:aa:aa:625:8:::a matrix T 2:1:2:8::a::13::2:::a: bits 2.1 ** * 1.9 ** ** **** 1.7 * ****** **** 1.5 * * * ****** * ****** Relative 1.2 * ** ******** * ****** Entropy 1.0 ************* * ****** (33.9 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CGGGCGTGGTGGCGCGCGCCTG consensus T C T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr5:140402880-140403380 - 30 5.06e-14 CAAAATTAGT CGGGCGTGGTGGCGCACGCCTG TAATCCCAGC chr3:44532647-44533147 - 73 2.09e-13 TTTAGC CGGGTGTGGTGGCGCACGCCTG TAATCCCAGC chr1:150320910-150321410 + 39 2.59e-13 aaaaatcagc cgggcgtggtggcgggcgcctg tagtcccagc chr5:177599256-177599756 - 41 2.59e-13 AAAAATTAGC CGGGCGTGGTGGCGGGCGCCTG TTAGTCCCAG chr22:37844476-37844976 - 34 3.12e-13 AAAAATTAGC TGGGCGTGGTGGCGCGCGCCTG TAGTCCCAGC chr17:16536366-16536866 + 5 3.12e-13 tagc tgggcgtggtggcgcgcgcctg tagtcccagc chr19:36379255-36379755 - 76 3.12e-13 AGT TGGGCGTGGTGGCGCGCGCCTG CAGTCCCAGC chr10:68956696-68957196 + 2 3.12e-13 c cgggcatggtggcgcgcgcctg tagtcccagc chr20:35616566-35617066 - 4 5.05e-13 AAAAATTGGC CGGGCATGGTGGCGCACGCCTG TAA chr19:40403813-40404313 - 66 6.20e-13 CGCTTTTGGC CGGGCGCGGTGGCTCACGCCTG TAATCCCAGC chr6:16128374-16128874 - 41 1.06e-12 TGTTCTCGTC CGGGCATGGTGGCTCACGCCTG TAATCCCAGC chr18:12701760-12702260 + 23 1.25e-12 aaaaattagc cgagcgtggtggcgcgcgcctg taatcccagc chr1:156337027-156337527 + 37 1.25e-12 aaaaattagc cgtgcgtggtggcgcgcgcctg tactcccagc chr12:56685285-56685785 - 56 1.57e-12 AAAAATTAGC CGGGTGTGGTGGCGGGCGCCTG TGGTCCCAGC chr14:49586371-49586871 + 11 1.57e-12 ATCCGACCgc cgggcgcggtggcgcgtgcctg tagtcccagc chr14:49862563-49863063 - 63 1.57e-12 CTCCGACCGC CGGGCGCGGTGGCGCGTGCCTG TAGTCCCAGC chr5:140719038-140719538 + 51 1.57e-12 aaaaattagc cgggtgtggtggcgggcgcctg tagccccagc chr12:755612-756112 + 19 1.76e-12 aaaaattagc cgggtatggtggcgcgcgcctg taattccaac chr1:37554333-37554833 + 47 1.96e-12 aaaaattagc cgggtgtggtggcgcgcacctg caatcccagt chr12:55829069-55829569 + 32 2.71e-12 agaaattcgc caggcgtggtggcgcgcacctg tagtcccagc chr15:69453896-69454396 - 73 3.09e-12 ATTAGC CAGGCATGGTGGCGCACGCCTG TAGTCCCAGC chr19:34218002-34218502 - 77 3.59e-12 GC CAGGCGCGGTGGCTCACGCCTG TAACCCCAGC chr22:36482231-36482731 - 37 3.59e-12 AAAAATCAGC CCGGCGTGGTGGCGCGCGCCTG TAATCCCAGC chrX:1799849-1800349 + 27 3.98e-12 TCATCTTggc cgggcacggtggctcacgcctg caatcacagc chr5:181218464-181218964 + 23 5.61e-12 aaaaattatc cgggcgtggtggcggccgcctg tagtccactc chr6:107027736-107028236 + 51 5.61e-12 aaaaattagc cgggcgtggtggtgggcgcctg tagtcccagc chr19:43655700-43656200 + 76 6.29e-12 agagggtggc cgggcgtggtggctcacgcttg taa chr12:124922433-12492293 - 47 7.06e-12 CAGAAATTAG CAGGCGTGGTGGTGCACGCCTG TAGTCCCAGC chr9:83987078-83987578 - 50 1.16e-11 GAAGGCAGGC CGGACGCGGTGGCTCACGCCTG TAACCCTAGC chr6:53559088-53559588 + 14 2.17e-11 aactttcagc cgggcacggtggctcacacctg taatcccagc chr19:37364890-37365390 - 14 2.17e-11 TCCTGTCGGC TGGGCGCGGTGGCTCATGCCTG TAATCCCAGC chr6:30907537-30908037 - 58 3.33e-11 CACTCCAGGC CGGGCGCGGTGACTCACGCCTG TAATCCTAGC chr6:28809260-28809760 + 55 3.93e-11 TTCTTGAAgc caggagtggtggctcacgcctg taatcccagc chr10:43407792-43408292 - 70 5.42e-11 AAAATTAGC CACGTGTGGTGGCGCGCGCCTG TTGTCCCAGC chr19:38851416-38851916 + 4 5.83e-11 Ggc cgtgtgtggtggctcacacctg taatcccagc chr17:36535530-36536030 - 57 6.78e-11 AAAAATTAGC TGAGCGTGGTGGTGCGCGCCTG TAATGCCAGG chr17:49569585-49570085 - 70 7.33e-11 AAAATTAGC CGGGCGTGGGAGCGCGCGCCTG TAATCCCAGC chr4:123941-124441 + 16 8.54e-11 agaaattggc cgggtgtggtggtgggcacctg taatcccagc chr17:4143133-4143633 + 49 1.16e-10 aaatattagc cggacgtgggggcgcgtgcctg taatcccagc chr19:55216229-55216729 - 12 1.16e-10 CTAATCGCGG CAGGCGTGGTGGCTCATGCTTG TAATCCCAGC chr1:9164190-9164690 + 62 1.76e-10 aaaacttaac tgggcatggtggcacacacctg taatcccaac chr1:233843390-233843890 - 69 2.01e-10 TTACTTTGGC TGAGTGTGGTGGCTCATGCCTG TAATCCCATC chr1:231457941-231458441 + 55 2.81e-10 acacatatgt caggtgtggtggctcatgccta caaccccagc chr19:36070082-36070582 - 17 7.91e-10 AAAAATTAGC TGTGCGTGGTGGCAGGCACCTG TAATCCCAGC chr19:33373003-33373503 - 31 4.67e-09 AGAGTGGAGG CTGACGCGGTGGCTCCCGCCTA TAATCTCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:140402880-140403380 5.1e-14 29_[-5]_49 chr3:44532647-44533147 2.1e-13 72_[-5]_6 chr1:150320910-150321410 2.6e-13 38_[+5]_40 chr5:177599256-177599756 2.6e-13 40_[-5]_38 chr22:37844476-37844976 3.1e-13 33_[-5]_45 chr17:16536366-16536866 3.1e-13 4_[+5]_74 chr19:36379255-36379755 3.1e-13 75_[-5]_3 chr10:68956696-68957196 3.1e-13 1_[+5]_77 chr20:35616566-35617066 5e-13 3_[-5]_75 chr19:40403813-40404313 6.2e-13 65_[-5]_13 chr6:16128374-16128874 1.1e-12 40_[-5]_38 chr18:12701760-12702260 1.3e-12 22_[+5]_56 chr1:156337027-156337527 1.3e-12 36_[+5]_42 chr12:56685285-56685785 1.6e-12 55_[-5]_23 chr14:49586371-49586871 1.6e-12 10_[+5]_68 chr14:49862563-49863063 1.6e-12 62_[-5]_16 chr5:140719038-140719538 1.6e-12 50_[+5]_28 chr12:755612-756112 1.8e-12 18_[+5]_60 chr1:37554333-37554833 2e-12 46_[+5]_32 chr12:55829069-55829569 2.7e-12 31_[+5]_47 chr15:69453896-69454396 3.1e-12 72_[-5]_6 chr19:34218002-34218502 3.6e-12 76_[-5]_2 chr22:36482231-36482731 3.6e-12 36_[-5]_42 chrX:1799849-1800349 4e-12 26_[+5]_52 chr5:181218464-181218964 5.6e-12 22_[+5]_56 chr6:107027736-107028236 5.6e-12 50_[+5]_28 chr19:43655700-43656200 6.3e-12 75_[+5]_3 chr12:124922433-12492293 7.1e-12 46_[-5]_32 chr9:83987078-83987578 1.2e-11 49_[-5]_29 chr6:53559088-53559588 2.2e-11 13_[+5]_65 chr19:37364890-37365390 2.2e-11 13_[-5]_65 chr6:30907537-30908037 3.3e-11 57_[-5]_21 chr6:28809260-28809760 3.9e-11 54_[+5]_24 chr10:43407792-43408292 5.4e-11 69_[-5]_9 chr19:38851416-38851916 5.8e-11 3_[+5]_75 chr17:36535530-36536030 6.8e-11 56_[-5]_22 chr17:49569585-49570085 7.3e-11 69_[-5]_9 chr4:123941-124441 8.5e-11 15_[+5]_63 chr17:4143133-4143633 1.2e-10 48_[+5]_30 chr19:55216229-55216729 1.2e-10 11_[-5]_67 chr1:9164190-9164690 1.8e-10 61_[+5]_17 chr1:233843390-233843890 2e-10 68_[-5]_10 chr1:231457941-231458441 2.8e-10 54_[+5]_24 chr19:36070082-36070582 7.9e-10 16_[-5]_62 chr19:33373003-33373503 4.7e-09 30_[-5]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGCGTGGTGGCKCRCGCCTG width=22 seqs=45 chr5:140402880-140403380 ( 30) CGGGCGTGGTGGCGCACGCCTG 1 chr3:44532647-44533147 ( 73) CGGGTGTGGTGGCGCACGCCTG 1 chr1:150320910-150321410 ( 39) CGGGCGTGGTGGCGGGCGCCTG 1 chr5:177599256-177599756 ( 41) CGGGCGTGGTGGCGGGCGCCTG 1 chr22:37844476-37844976 ( 34) TGGGCGTGGTGGCGCGCGCCTG 1 chr17:16536366-16536866 ( 5) TGGGCGTGGTGGCGCGCGCCTG 1 chr19:36379255-36379755 ( 76) TGGGCGTGGTGGCGCGCGCCTG 1 chr10:68956696-68957196 ( 2) CGGGCATGGTGGCGCGCGCCTG 1 chr20:35616566-35617066 ( 4) CGGGCATGGTGGCGCACGCCTG 1 chr19:40403813-40404313 ( 66) CGGGCGCGGTGGCTCACGCCTG 1 chr6:16128374-16128874 ( 41) CGGGCATGGTGGCTCACGCCTG 1 chr18:12701760-12702260 ( 23) CGAGCGTGGTGGCGCGCGCCTG 1 chr1:156337027-156337527 ( 37) CGTGCGTGGTGGCGCGCGCCTG 1 chr12:56685285-56685785 ( 56) CGGGTGTGGTGGCGGGCGCCTG 1 chr14:49586371-49586871 ( 11) CGGGCGCGGTGGCGCGTGCCTG 1 chr14:49862563-49863063 ( 63) CGGGCGCGGTGGCGCGTGCCTG 1 chr5:140719038-140719538 ( 51) CGGGTGTGGTGGCGGGCGCCTG 1 chr12:755612-756112 ( 19) CGGGTATGGTGGCGCGCGCCTG 1 chr1:37554333-37554833 ( 47) CGGGTGTGGTGGCGCGCACCTG 1 chr12:55829069-55829569 ( 32) CAGGCGTGGTGGCGCGCACCTG 1 chr15:69453896-69454396 ( 73) CAGGCATGGTGGCGCACGCCTG 1 chr19:34218002-34218502 ( 77) CAGGCGCGGTGGCTCACGCCTG 1 chr22:36482231-36482731 ( 37) CCGGCGTGGTGGCGCGCGCCTG 1 chrX:1799849-1800349 ( 27) CGGGCACGGTGGCTCACGCCTG 1 chr5:181218464-181218964 ( 23) CGGGCGTGGTGGCGGCCGCCTG 1 chr6:107027736-107028236 ( 51) CGGGCGTGGTGGTGGGCGCCTG 1 chr19:43655700-43656200 ( 76) CGGGCGTGGTGGCTCACGCTTG 1 chr12:124922433-12492293 ( 47) CAGGCGTGGTGGTGCACGCCTG 1 chr9:83987078-83987578 ( 50) CGGACGCGGTGGCTCACGCCTG 1 chr6:53559088-53559588 ( 14) CGGGCACGGTGGCTCACACCTG 1 chr19:37364890-37365390 ( 14) TGGGCGCGGTGGCTCATGCCTG 1 chr6:30907537-30908037 ( 58) CGGGCGCGGTGACTCACGCCTG 1 chr6:28809260-28809760 ( 55) CAGGAGTGGTGGCTCACGCCTG 1 chr10:43407792-43408292 ( 70) CACGTGTGGTGGCGCGCGCCTG 1 chr19:38851416-38851916 ( 4) CGTGTGTGGTGGCTCACACCTG 1 chr17:36535530-36536030 ( 57) TGAGCGTGGTGGTGCGCGCCTG 1 chr17:49569585-49570085 ( 70) CGGGCGTGGGAGCGCGCGCCTG 1 chr4:123941-124441 ( 16) CGGGTGTGGTGGTGGGCACCTG 1 chr17:4143133-4143633 ( 49) CGGACGTGGGGGCGCGTGCCTG 1 chr19:55216229-55216729 ( 12) CAGGCGTGGTGGCTCATGCTTG 1 chr1:9164190-9164690 ( 62) TGGGCATGGTGGCACACACCTG 1 chr1:233843390-233843890 ( 69) TGAGTGTGGTGGCTCATGCCTG 1 chr1:231457941-231458441 ( 55) CAGGTGTGGTGGCTCATGCCTA 1 chr19:36070082-36070582 ( 17) TGTGCGTGGTGGCAGGCACCTG 1 chr19:33373003-33373503 ( 31) CTGACGCGGTGGCTCCCGCCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.61907 E= 2.8e-238 -1214 180 -1214 -57 -57 -341 171 -356 -198 -341 183 -198 -198 -1214 198 -1214 -356 167 -1214 -24 -57 -1214 180 -1214 -1214 -9 -1214 156 -1214 -1214 208 -1214 -1214 -1214 208 -1214 -1214 -1214 -241 186 -356 -1214 204 -1214 -356 -1214 204 -1214 -1214 194 -1214 -156 -256 -1214 139 34 -1214 180 -41 -1214 76 -241 111 -1214 -1214 183 -1214 -76 -76 -1214 183 -1214 -1214 208 -1214 -1214 -1214 201 -1214 -256 -1214 -1214 -1214 193 -256 -1214 201 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 45 E= 2.8e-238 0.000000 0.822222 0.000000 0.177778 0.177778 0.022222 0.777778 0.022222 0.066667 0.022222 0.844444 0.066667 0.066667 0.000000 0.933333 0.000000 0.022222 0.755556 0.000000 0.222222 0.177778 0.000000 0.822222 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.044444 0.955556 0.022222 0.000000 0.977778 0.000000 0.022222 0.000000 0.977778 0.000000 0.000000 0.911111 0.000000 0.088889 0.044444 0.000000 0.622222 0.333333 0.000000 0.822222 0.177778 0.000000 0.444444 0.044444 0.511111 0.000000 0.000000 0.844444 0.000000 0.155556 0.155556 0.000000 0.844444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.955556 0.000000 0.044444 0.000000 0.000000 0.000000 1.000000 0.044444 0.000000 0.955556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGCGTGGTGGCKCRCGCCTG MEME-5 regular expression -------------------------------------------------------------------------------- CGGG[CT]G[TC]GGTGGC[GT]C[GA]CGCCTG -------------------------------------------------------------------------------- Time 1729.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGGAAACCATCATTCTCA MEME-6 width = 20 sites = 29 llr = 648 E-value = 1.0e-125 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::1:a98::9::9::::1a pos.-specific C :a::::::aa::9::1a:7: probability G 9::9a:12:::::1:1::1: matrix T ::a::::::::91:a8:a1: bits 2.1 * 1.9 ** ** ** ** 1.7 *** *** ** ** ** * 1.5 ******* ******* ** * Relative 1.2 *************** ** * Entropy 1.0 ****************** * (32.3 bits) 0.8 ****************** * 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel GCTGGAAACCATCATTCTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr1:233827818-233828318 + 76 9.82e-13 catggatgaa gctggaaaccatcattctca gcaaa chr1:244562804-244563304 - 10 9.82e-13 CATGGATAAA GCTGGAAACCATCATTCTCA GCAAACTAA chr1:241425043-241425543 - 17 9.82e-13 CATGGATGAA GCTGGAAACCATCATTCTCA GCAAACTAAC chrX:78225968-78226468 - 14 9.82e-13 CACAGATGAA GCTGGAAACCATCATTCTCA GCAAACTATC chr19:30290742-30291242 - 26 9.82e-13 CATGGATGAA GCTGGAAACCATCATTCTCA GCAAACAACA chr1:232156048-232156548 + 34 9.82e-13 catggatgaa gctggaaaccatcattctca gcaaactaac chr17:2652854-2653354 + 80 9.82e-13 catggatgaa gctggaaaccatcattctca g chr1:236186397-236186897 - 20 9.82e-13 CATGGATGAA GCTGGAAACCATCATTCTCA GCAAGCTGAC chr19:37076452-37076952 - 1 3.84e-12 CATGGATAAA GCTGGAAACCATCATTCTTA chr6:115940964-115941464 + 43 3.84e-12 catggataaa gctggaaaccatcattctta acaaactaac chr19:44253352-44253852 + 63 3.84e-12 catggatgaa gctggaaaccatcattctta gcaaactaac chr7:100940646-100941146 - 41 3.84e-12 CATGGATGAA GCTGGAAACCATCATTCTTA GCAAACTATC chr1:93910801-93911301 - 12 5.92e-12 AATGGATGAA GCTGGAAACCATCATTCTGA GCAAATTGTC chr19:40091681-40092181 + 70 5.92e-12 catggatgaa gctggaaaccatcattctga gcaaactatc chr20:45657027-45657527 + 70 8.10e-12 catggatgaa gctagaaaccatcattctca gcaaactatc chrX:68559858-68560358 - 4 8.10e-12 CATGGGTGAA GCTAGAAACCATCATTCTCA GCA chr15:70373340-70373840 + 65 1.62e-11 catggatgaa gctggaaaccgtcattctca gcaaactatc chr17:46921945-46922445 + 52 2.09e-11 cacggatgaa gctggaaaccaacattctca gcaaactatc chr10:74457453-74457953 + 78 2.48e-11 catggataaa tctggaaaccatcattctca gta chr1:223283671-223284171 + 74 3.09e-11 catggatgaa gctgaaaaccatcattctca gcaaact chr19:40964262-40964762 - 27 5.56e-11 CATGGATGAA GCTGGAAACCATCGTTCTGA GCAAACTGTC chr5:38516646-38517146 + 75 9.37e-11 catgaatgaa gttggaagccatcattctca gcaaac chr17:78862585-78863085 - 57 1.65e-10 CATGAGTGCA GCTGGAAACCATTATCCTAA GGGAACTAGT chr12:101559874-10156037 - 27 1.74e-10 CATGGATGAA GCTGGAAGCCATCGTCCTCA GCAAACTAAC chr1:225232883-225233383 - 4 1.02e-09 CATGGTTGGA GCTGGAAGCCCTTATCCTCA GCA chr6:11956723-11957223 - 17 2.33e-09 CATGGATGCA GCTGGAGGCCATTATCCTAA GCAAGCTAAG chr1:231948061-231948561 + 58 2.59e-09 gatggatgaa gctcgaaaccaccattctcc gcaaactatc chrX:525083-525583 + 18 2.31e-08 tgtggatgga cctggaagacatcacgctca gtgacagaag chr3:191646218-191646718 + 58 2.66e-08 catggatgga gctagagacgattatgctaa atgaattaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:233827818-233828318 9.8e-13 75_[+6]_5 chr1:244562804-244563304 9.8e-13 9_[-6]_71 chr1:241425043-241425543 9.8e-13 16_[-6]_64 chrX:78225968-78226468 9.8e-13 13_[-6]_67 chr19:30290742-30291242 9.8e-13 25_[-6]_55 chr1:232156048-232156548 9.8e-13 33_[+6]_47 chr17:2652854-2653354 9.8e-13 79_[+6]_1 chr1:236186397-236186897 9.8e-13 19_[-6]_61 chr19:37076452-37076952 3.8e-12 [-6]_80 chr6:115940964-115941464 3.8e-12 42_[+6]_38 chr19:44253352-44253852 3.8e-12 62_[+6]_18 chr7:100940646-100941146 3.8e-12 40_[-6]_40 chr1:93910801-93911301 5.9e-12 11_[-6]_69 chr19:40091681-40092181 5.9e-12 69_[+6]_11 chr20:45657027-45657527 8.1e-12 69_[+6]_11 chrX:68559858-68560358 8.1e-12 3_[-6]_77 chr15:70373340-70373840 1.6e-11 64_[+6]_16 chr17:46921945-46922445 2.1e-11 51_[+6]_29 chr10:74457453-74457953 2.5e-11 77_[+6]_3 chr1:223283671-223284171 3.1e-11 73_[+6]_7 chr19:40964262-40964762 5.6e-11 26_[-6]_54 chr5:38516646-38517146 9.4e-11 74_[+6]_6 chr17:78862585-78863085 1.7e-10 56_[-6]_24 chr12:101559874-10156037 1.7e-10 26_[-6]_54 chr1:225232883-225233383 1e-09 3_[-6]_77 chr6:11956723-11957223 2.3e-09 16_[-6]_64 chr1:231948061-231948561 2.6e-09 57_[+6]_23 chrX:525083-525583 2.3e-08 17_[+6]_63 chr3:191646218-191646718 2.7e-08 57_[+6]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGGAAACCATCATTCTCA width=20 seqs=29 chr1:233827818-233828318 ( 76) GCTGGAAACCATCATTCTCA 1 chr1:244562804-244563304 ( 10) GCTGGAAACCATCATTCTCA 1 chr1:241425043-241425543 ( 17) GCTGGAAACCATCATTCTCA 1 chrX:78225968-78226468 ( 14) GCTGGAAACCATCATTCTCA 1 chr19:30290742-30291242 ( 26) GCTGGAAACCATCATTCTCA 1 chr1:232156048-232156548 ( 34) GCTGGAAACCATCATTCTCA 1 chr17:2652854-2653354 ( 80) GCTGGAAACCATCATTCTCA 1 chr1:236186397-236186897 ( 20) GCTGGAAACCATCATTCTCA 1 chr19:37076452-37076952 ( 1) GCTGGAAACCATCATTCTTA 1 chr6:115940964-115941464 ( 43) GCTGGAAACCATCATTCTTA 1 chr19:44253352-44253852 ( 63) GCTGGAAACCATCATTCTTA 1 chr7:100940646-100941146 ( 41) GCTGGAAACCATCATTCTTA 1 chr1:93910801-93911301 ( 12) GCTGGAAACCATCATTCTGA 1 chr19:40091681-40092181 ( 70) GCTGGAAACCATCATTCTGA 1 chr20:45657027-45657527 ( 70) GCTAGAAACCATCATTCTCA 1 chrX:68559858-68560358 ( 4) GCTAGAAACCATCATTCTCA 1 chr15:70373340-70373840 ( 65) GCTGGAAACCGTCATTCTCA 1 chr17:46921945-46922445 ( 52) GCTGGAAACCAACATTCTCA 1 chr10:74457453-74457953 ( 78) TCTGGAAACCATCATTCTCA 1 chr1:223283671-223284171 ( 74) GCTGAAAACCATCATTCTCA 1 chr19:40964262-40964762 ( 27) GCTGGAAACCATCGTTCTGA 1 chr5:38516646-38517146 ( 75) GTTGGAAGCCATCATTCTCA 1 chr17:78862585-78863085 ( 57) GCTGGAAACCATTATCCTAA 1 chr12:101559874-10156037 ( 27) GCTGGAAGCCATCGTCCTCA 1 chr1:225232883-225233383 ( 4) GCTGGAAGCCCTTATCCTCA 1 chr6:11956723-11957223 ( 17) GCTGGAGGCCATTATCCTAA 1 chr1:231948061-231948561 ( 58) GCTCGAAACCACCATTCTCC 1 chrX:525083-525583 ( 18) CCTGGAAGACATCACGCTCA 1 chr3:191646218-191646718 ( 58) GCTAGAGACGATTATGCTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 11.3509 E= 1.0e-125 -1150 -278 197 -293 -1150 203 -1150 -293 -1150 -1150 -1150 193 -135 -278 186 -1150 -293 -1150 203 -1150 193 -1150 -1150 -1150 182 -1150 -178 -1150 165 -1150 -46 -1150 -293 203 -1150 -1150 -1150 203 -278 -1150 182 -278 -278 -1150 -293 -278 -1150 182 -1150 186 -1150 -93 182 -1150 -178 -1150 -1150 -278 -1150 188 -1150 -78 -178 159 -1150 208 -1150 -1150 -1150 -1150 -1150 193 -135 147 -119 -93 188 -278 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 29 E= 1.0e-125 0.000000 0.034483 0.931034 0.034483 0.000000 0.965517 0.000000 0.034483 0.000000 0.000000 0.000000 1.000000 0.103448 0.034483 0.862069 0.000000 0.034483 0.000000 0.965517 0.000000 1.000000 0.000000 0.000000 0.000000 0.931034 0.000000 0.068966 0.000000 0.827586 0.000000 0.172414 0.000000 0.034483 0.965517 0.000000 0.000000 0.000000 0.965517 0.034483 0.000000 0.931034 0.034483 0.034483 0.000000 0.034483 0.034483 0.000000 0.931034 0.000000 0.862069 0.000000 0.137931 0.931034 0.000000 0.068966 0.000000 0.000000 0.034483 0.000000 0.965517 0.000000 0.137931 0.068966 0.793103 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.103448 0.655172 0.103448 0.137931 0.965517 0.034483 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGAAACCATCATTCTCA MEME-6 regular expression -------------------------------------------------------------------------------- GCTGGAAACCATCATTCTCA -------------------------------------------------------------------------------- Time 2046.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TATACACCATGGAATA MEME-7 width = 16 sites = 46 llr = 766 E-value = 3.0e-122 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 Description -------------------------------------------------------------------------------- Simplified A :8:9:9:291::aa:a pos.-specific C 112:8:97:::::::: probability G ::::::::1:aa:::: matrix T 9:7:2:11:9::::a: bits 2.1 1.9 *** ** 1.7 ******* 1.5 * ** ******** Relative 1.2 * **** ******** Entropy 1.0 ** ************* (24.0 bits) 0.8 **************** 0.6 **************** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel TATACACCATGGAATA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:244562804-244563304 - 84 3.11e-10 A TATACACCATGGAATA CTATGCAGCC chr1:225310530-225311030 - 71 3.11e-10 ATGTGGCACA TATACACCATGGAATA CTATGCAGCC chrX:75348547-75349047 - 61 3.11e-10 ATGTGGCATA TATACACCATGGAATA CTATGCAGCC chr3:24572341-24572841 + 13 3.11e-10 atgcggcaca tatacaccatggaata ctatgcagcc chr19:44219897-44220397 - 37 3.11e-10 ATGTGGCACA TATACACCATGGAATA CTATGCAGCC chrX:823013-823513 - 60 3.11e-10 ATGTGGCATA TATACACCATGGAATA CTATGCAGCC chrX:79933878-79934378 + 23 3.11e-10 atgtggtatg tatacaccatggaata ctatgcagcc chrX:68559858-68560358 - 72 3.11e-10 ATGTGGCACA TATACACCATGGAATA CTATGCAGCC chr6:78665769-78666269 - 52 3.11e-10 ATGTGGCACA TATACACCATGGAATA CTATGCAGCC chr19:40091681-40092181 + 1 3.11e-10 . tatacaccatggaata ctatgcagcc chr3:187023315-187023815 + 14 3.11e-10 aatgtgcaca tatacaccatggaata ctatgcagcc chrX:84796256-84796756 + 19 3.11e-10 aatgtgtgca tatacaccatggaata ctatacagtc chr1:225232883-225233383 - 78 3.11e-10 TGGTACA TATACACCATGGAATA CTATGCAGCC chr19:49945779-49946279 - 72 3.11e-10 AAATGGTGCA TATACACCATGGAATA CTATGCAGCC chr1:93910801-93911301 - 85 5.92e-10 . TACACACCATGGAATA CTATGCAGCC chrX:19511736-19512236 + 26 9.37e-10 atgttgcaca tatacacaatggaata ctatgcagcc chr1:46990480-46990980 + 14 1.28e-09 atgtggcaca tatataccatggaata ctatgcagcc chrX:123722139-123722639 + 22 1.28e-09 atgtggcaca tatataccatggaata ctatgcaacc chr19:29210450-29210950 - 63 1.56e-09 ATGTGGCACA TATACACCGTGGAATA CTATGCAGCC chr19:37076452-37076952 - 75 3.09e-09 ATGTGGCACA TATACATCATGGAATA CTATGCAGCC chr1:232158494-232158994 + 35 3.44e-09 atgtggtaca tatacactatggaata ctacgcagcc chr19:40080240-40080740 + 33 3.75e-09 atgtggtaca tatacaccaaggaata ctatgcaacc chrX:74701281-74701781 + 20 4.67e-09 atgtggcaca tgtacaccatggaata ctatgcagtc chr1:223283671-223284171 + 4 5.23e-09 aca tatgcaccatggaata ctacgcagcc chr1:229798510-229799010 + 31 5.82e-09 atgtgctgca tatacacagtggaata ctatgcagcc chr1:234762065-234762565 - 67 7.54e-09 ATGTGGCACA TAGACACCATGGAATA CTATGCAGCC chr3:176093856-176094356 + 16 9.94e-09 acgtggcaca tttacaccatggaata ctatgcagcc chrX:83990098-83990598 + 27 1.25e-08 atgtggcaca tatacaacatggaata ctatgcagct chr12:46973879-46974379 - 66 1.25e-08 ATGTGGCACA TGCACACCATGGAATA CTATGCAGCC chr5:38516646-38517146 + 5 1.62e-08 caca tacacaccatggagta ctatgcagcc chr17:2652854-2653354 + 10 1.81e-08 tgtggtaca tatacatcgtggaata ctatgcagcc chr1:233827818-233828318 + 6 3.38e-08 gcaca catatacaatggaata ctatgcagcc chr1:226431886-226432386 + 22 4.43e-08 atgtggcata tacacactgtggaata ctatgcagcc chrX:88007833-88008333 - 70 4.89e-08 ATGTGGCACA TATGCATCATGGAATA CTATGCAGCC chrX:1021417-1021917 - 56 6.64e-08 TGAGAGAAGA GACACACAATGGAATA CTACACAGCC chr5:174362460-174362960 + 46 6.64e-08 atgtggtata tccatacaatggaata ttattcagcc chr5:17357437-17357937 - 70 8.62e-08 ACGTGGTACA CACACGCCATGGAATA CTATACAGCC chr10:74457453-74457953 + 8 1.72e-07 tggcaca taaccaccatggaata ctatgcagcc chr16:3317339-3317839 + 66 1.97e-07 AGCACTTAAC AACACACCAAGGAATA AAACCATATA chr19:3910056-3910556 - 51 2.50e-07 ATGTGGTATG TCCATACAGTGGAATA TTATGCAGCC chr1:223285390-223285890 + 44 2.50e-07 acatggttca catataccatgaaata ctatgcagcc chr19:11631785-11632285 + 5 4.21e-07 taca tatacatagtggagta ctattcagcc chr19:3898382-3898882 - 36 8.16e-07 ATGTGGTATA TCCATTCAATGGAATA CTATTTAGCC chr22:39276941-39277441 + 35 8.16e-07 ttgtggtatg tccttacaatggaata ttacttggcc chrUn_KI270467v1:2685-31 + 54 1.29e-06 tgatatttta tatacactatataata atacacagtt chr7:149710726-149711226 + 47 1.43e-06 gaagttaaat catatgcaaaggaata attagactga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:244562804-244563304 3.1e-10 83_[-7]_1 chr1:225310530-225311030 3.1e-10 70_[-7]_14 chrX:75348547-75349047 3.1e-10 60_[-7]_24 chr3:24572341-24572841 3.1e-10 12_[+7]_72 chr19:44219897-44220397 3.1e-10 36_[-7]_48 chrX:823013-823513 3.1e-10 59_[-7]_25 chrX:79933878-79934378 3.1e-10 22_[+7]_62 chrX:68559858-68560358 3.1e-10 71_[-7]_13 chr6:78665769-78666269 3.1e-10 51_[-7]_33 chr19:40091681-40092181 3.1e-10 [+7]_84 chr3:187023315-187023815 3.1e-10 13_[+7]_71 chrX:84796256-84796756 3.1e-10 18_[+7]_66 chr1:225232883-225233383 3.1e-10 77_[-7]_7 chr19:49945779-49946279 3.1e-10 71_[-7]_13 chr1:93910801-93911301 5.9e-10 84_[-7] chrX:19511736-19512236 9.4e-10 25_[+7]_59 chr1:46990480-46990980 1.3e-09 13_[+7]_71 chrX:123722139-123722639 1.3e-09 21_[+7]_63 chr19:29210450-29210950 1.6e-09 62_[-7]_22 chr19:37076452-37076952 3.1e-09 74_[-7]_10 chr1:232158494-232158994 3.4e-09 34_[+7]_50 chr19:40080240-40080740 3.7e-09 32_[+7]_52 chrX:74701281-74701781 4.7e-09 19_[+7]_65 chr1:223283671-223284171 5.2e-09 3_[+7]_81 chr1:229798510-229799010 5.8e-09 30_[+7]_54 chr1:234762065-234762565 7.5e-09 66_[-7]_18 chr3:176093856-176094356 9.9e-09 15_[+7]_69 chrX:83990098-83990598 1.3e-08 26_[+7]_58 chr12:46973879-46974379 1.3e-08 65_[-7]_19 chr5:38516646-38517146 1.6e-08 4_[+7]_80 chr17:2652854-2653354 1.8e-08 9_[+7]_75 chr1:233827818-233828318 3.4e-08 5_[+7]_79 chr1:226431886-226432386 4.4e-08 21_[+7]_63 chrX:88007833-88008333 4.9e-08 69_[-7]_15 chrX:1021417-1021917 6.6e-08 55_[-7]_29 chr5:174362460-174362960 6.6e-08 45_[+7]_39 chr5:17357437-17357937 8.6e-08 69_[-7]_15 chr10:74457453-74457953 1.7e-07 7_[+7]_77 chr16:3317339-3317839 2e-07 65_[+7]_19 chr19:3910056-3910556 2.5e-07 50_[-7]_34 chr1:223285390-223285890 2.5e-07 43_[+7]_41 chr19:11631785-11632285 4.2e-07 4_[+7]_80 chr19:3898382-3898882 8.2e-07 35_[-7]_49 chr22:39276941-39277441 8.2e-07 34_[+7]_50 chrUn_KI270467v1:2685-31 1.3e-06 53_[+7]_31 chr7:149710726-149711226 1.4e-06 46_[+7]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATACACCATGGAATA width=16 seqs=46 chr1:244562804-244563304 ( 84) TATACACCATGGAATA 1 chr1:225310530-225311030 ( 71) TATACACCATGGAATA 1 chrX:75348547-75349047 ( 61) TATACACCATGGAATA 1 chr3:24572341-24572841 ( 13) TATACACCATGGAATA 1 chr19:44219897-44220397 ( 37) TATACACCATGGAATA 1 chrX:823013-823513 ( 60) TATACACCATGGAATA 1 chrX:79933878-79934378 ( 23) TATACACCATGGAATA 1 chrX:68559858-68560358 ( 72) TATACACCATGGAATA 1 chr6:78665769-78666269 ( 52) TATACACCATGGAATA 1 chr19:40091681-40092181 ( 1) TATACACCATGGAATA 1 chr3:187023315-187023815 ( 14) TATACACCATGGAATA 1 chrX:84796256-84796756 ( 19) TATACACCATGGAATA 1 chr1:225232883-225233383 ( 78) TATACACCATGGAATA 1 chr19:49945779-49946279 ( 72) TATACACCATGGAATA 1 chr1:93910801-93911301 ( 85) TACACACCATGGAATA 1 chrX:19511736-19512236 ( 26) TATACACAATGGAATA 1 chr1:46990480-46990980 ( 14) TATATACCATGGAATA 1 chrX:123722139-123722639 ( 22) TATATACCATGGAATA 1 chr19:29210450-29210950 ( 63) TATACACCGTGGAATA 1 chr19:37076452-37076952 ( 75) TATACATCATGGAATA 1 chr1:232158494-232158994 ( 35) TATACACTATGGAATA 1 chr19:40080240-40080740 ( 33) TATACACCAAGGAATA 1 chrX:74701281-74701781 ( 20) TGTACACCATGGAATA 1 chr1:223283671-223284171 ( 4) TATGCACCATGGAATA 1 chr1:229798510-229799010 ( 31) TATACACAGTGGAATA 1 chr1:234762065-234762565 ( 67) TAGACACCATGGAATA 1 chr3:176093856-176094356 ( 16) TTTACACCATGGAATA 1 chrX:83990098-83990598 ( 27) TATACAACATGGAATA 1 chr12:46973879-46974379 ( 66) TGCACACCATGGAATA 1 chr5:38516646-38517146 ( 5) TACACACCATGGAGTA 1 chr17:2652854-2653354 ( 10) TATACATCGTGGAATA 1 chr1:233827818-233828318 ( 6) CATATACAATGGAATA 1 chr1:226431886-226432386 ( 22) TACACACTGTGGAATA 1 chrX:88007833-88008333 ( 70) TATGCATCATGGAATA 1 chrX:1021417-1021917 ( 56) GACACACAATGGAATA 1 chr5:174362460-174362960 ( 46) TCCATACAATGGAATA 1 chr5:17357437-17357937 ( 70) CACACGCCATGGAATA 1 chr10:74457453-74457953 ( 8) TAACCACCATGGAATA 1 chr16:3317339-3317839 ( 66) AACACACCAAGGAATA 1 chr19:3910056-3910556 ( 51) TCCATACAGTGGAATA 1 chr1:223285390-223285890 ( 44) CATATACCATGAAATA 1 chr19:11631785-11632285 ( 5) TATACATAGTGGAGTA 1 chr19:3898382-3898882 ( 36) TCCATTCAATGGAATA 1 chr22:39276941-39277441 ( 35) TCCTTACAATGGAATA 1 chrUn_KI270467v1:2685-31 ( 54) TATACACTATATAATA 1 chr7:149710726-149711226 ( 47) CATATGCAAAGGAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.1782 E= 3.0e-122 -359 -145 -344 172 169 -145 -244 -359 -359 1 -344 145 179 -344 -244 -359 -1217 176 -1217 -43 183 -1217 -244 -359 -359 191 -1217 -160 -28 160 -1217 -201 172 -1217 -86 -1217 -201 -1217 -1217 183 -359 -1217 205 -1217 -359 -1217 201 -359 193 -1217 -1217 -1217 186 -1217 -244 -1217 -1217 -1217 -1217 193 193 -1217 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 46 E= 3.0e-122 0.021739 0.086957 0.021739 0.869565 0.847826 0.086957 0.043478 0.021739 0.021739 0.239130 0.021739 0.717391 0.913043 0.021739 0.043478 0.021739 0.000000 0.804348 0.000000 0.195652 0.934783 0.000000 0.043478 0.021739 0.021739 0.891304 0.000000 0.086957 0.217391 0.717391 0.000000 0.065217 0.869565 0.000000 0.130435 0.000000 0.065217 0.000000 0.000000 0.934783 0.021739 0.000000 0.978261 0.000000 0.021739 0.000000 0.956522 0.021739 1.000000 0.000000 0.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATACACCATGGAATA MEME-7 regular expression -------------------------------------------------------------------------------- TA[TC]ACAC[CA]ATGGAATA -------------------------------------------------------------------------------- Time 2362.67 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCYGGSYTCAAGYGATYCTC MEME-8 width = 22 sites = 46 llr = 832 E-value = 4.1e-135 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::::12::::88:118:::1: pos.-specific C 8:8a4::45:921:51:14918 probability G ::1::886::::19:8::::11 matrix T 1a2:6:::5a1:1131195:8: bits 2.1 1.9 * 1.7 * * * * 1.5 * * ** * * * Relative 1.2 ** * ** ** * * * * Entropy 1.0 **** ** **** * *** * * (26.1 bits) 0.8 ************** ******* 0.6 ************** ******* 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTCCTGGGCTCAAGCGATTCTC consensus C ACT T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr14:49862563-49863063 + 11 1.35e-13 cagcccagaa ctcctgggctcaagcgatcctc ccacctcagc chr6:52995843-52996343 + 29 4.36e-13 taacctccac ctcccgggttcaagcgattctc ctgactcagc chr1:109216581-109217081 + 65 4.36e-13 tggcctcaaa ctcctggcctcaagcgatcctc ccacctcggc chr8:144767168-144767668 + 68 7.11e-13 tggtctcgaa ctcctgggctcaagtgatcctc ctgcctcagc chr9:136872448-136872948 + 58 1.22e-12 caacctccac ctcccgggttcaagtgattctc ctgcctcagc chr19:2385416-2385916 - 9 1.22e-12 TGGCCTTGAA CTCCTGGCCTCAAGTGATCCTC CTGCCTCG chr6:28790355-28790855 - 3 1.46e-12 CAACCTCCGC CTCCTGAGTTCAAGCGATTCTC CT chr19:36379255-36379755 + 24 8.17e-12 cagccgcgac ctcccgggctcaagcgaccctc ccacccgagc chr17:5192021-5192521 + 68 1.78e-11 cagcctccat ctcccaggttcaagcgattctc ctgcctcggc chr4:123941-124441 - 64 1.78e-11 CAACCTCTGC CTCCCGGGTTTAAGCGATTCTC CTCAGCCTCC chr10:68956696-68957196 - 54 2.30e-11 CAACCTCCGC CTCCCGGGTTCAAGCAATTCTC CTGCCTCAGC chr6:27214046-27214546 + 29 2.94e-11 caacctccgc ctccccggctcaagcgattctc ctgcctcagc chr14:49586371-49586871 - 63 3.32e-11 CAGCCCAGAA CTCCTGGACTCAAGCGATCCTC CAGCCTCAGC chr17:16536366-16536866 - 57 5.94e-11 CAACCTTTGC CTCCCGGCTTCAAGCGATTCTT CTGCCTCAGC chr22:40711332-40711832 - 39 7.59e-11 TGACCTCAGT ATCCTGGGTTCAAGTGATCCTC CTGCCTCAGC chr17:49569585-49570085 + 18 8.57e-11 caacctctgc ctcccgggttgaagcgattctc ctacctcagc chr12:56685285-56685785 + 4 9.77e-11 cgc cttccgggttcaagccattctc ttgccttagc chr14:21511470-21511970 + 56 9.77e-11 caacctccac ctcccgggttcaagtgattatc ctgccgcagc chr19:33063994-33064494 - 48 1.24e-10 CAGCCTCGAC TTCCTGGCCTCCAGCGATCCTC CCGCCCCAGC chrX:1799849-1800349 - 79 1.36e-10 . CTCCTGACCTCAAGTGATCCGC CCACCTCGGC chr17:36535530-36536030 + 16 1.57e-10 ctgccttcca cctctgggctcaagcgatcctc ccgcctcagc chr18:12701760-12702260 - 74 3.45e-10 TCCGC CTCCCAGGTTTAAGCGATTCTC CGCCTCAGCC chr17:1258952-1259452 + 28 3.79e-10 tggtctcgaa ctcctgacctcaagagatccgc ccgcccaggc chr19:13747292-13747792 + 67 7.96e-10 caacctctgc ctcccgggttcaagcaattctt ttgcctcagc chr1:233843390-233843890 + 17 8.88e-10 tggtattaaa ttcctagcttcaagtgatcctc ttgcctcagc chr3:169762981-169763481 - 46 9.72e-10 TGGCCTCGAA CTCCTGACCTCAGGTGATCCGC CCGCTTCTGC chr19:40403813-40404313 + 14 9.72e-10 tctcgaactc ctcctgggcccaagggatcctc ccgcctcggc chr12:755612-756112 - 71 1.32e-09 ACCTCCAC CTGCTGGGTTCAAGATATTCTC CTGCCTCAGC chr6:53559088-53559588 - 66 1.45e-09 TGGTCTTGAA CTCCTGACCTCAGGTGATCCAC CTGCCTCGGC chr19:36796870-36797370 + 45 1.45e-09 caagctccgc ctcccgggttcacgccattctg cggcctcagc chr1:205734418-205734918 - 49 1.77e-09 TGGTCTTGAA CTCCTGACTTCAGGTGATCCAC CCACCTTGGC chr15:69453896-69454396 + 21 5.37e-09 caagctccgc ctcccgggttcacgccattatc ctgcctcagc chr1:28373401-28373901 + 48 5.37e-09 tggtctcaaa ttccttggctcaggcgatcctc tcacctcagc chr1:228103470-228103970 - 38 8.39e-09 GCAACCTCTG CCTCCCGGCTCAAGTGATTCTC CTGCTTCAGC chr6:30907537-30908037 + 7 1.18e-08 ctcgaa ctcctgacctcgggtgattcgc cgcctcggcc chr19:40832077-40832577 - 37 2.10e-08 TGGTCTTGAA CTTGTGACCTCAAGCGATCCAC CCTCCTTGGC chr5:181218464-181218964 - 70 3.97e-08 AAGCTCCGC ATGCCGGGTTCACGCCATTCTC CTGCCTCAGC chr1:154295568-154296068 - 54 5.40e-08 ATTCCATTGC CTCCTGGTCTCCATTGTTTCTG AAGAGAAGTC chr22:19648368-19648868 - 43 6.27e-08 ATGTCACTTC CTTCTGGCCTCCATAGTTTCTG GTGAGAAATC chr3:44532647-44533147 + 21 6.75e-08 caacctccgc cttcagcgttcaagcaattctc ctgcctcagc chr18:50961944-50962444 + 29 2.25e-07 atcccactgc cttctggctttcattgtttctg ctgagaagtc chr19:38162576-38163076 + 28 3.16e-06 tccaagccct ctgctgggtccctgcgtctttc cagcagtgga chr4:56977752-56978252 - 3 4.55e-06 TGGTCTCGAT CTCCTGACCTCATGATCCGCCC GC chr1:243230775-243231275 - 74 5.57e-06 ACTGC TTTCTAGTCTCCATAGTTTCTG AGAAGAAATC chr19:37317782-37318282 + 39 1.26e-05 GCAGCGTGGA GTCCTGGCCTTCAGCGTCCGCG GCTGGGAAAT chr19:44211883-44212383 + 30 1.81e-05 tggtctggaa ctcctgacctcgtgatccgccc gcctcggcct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:49862563-49863063 1.3e-13 10_[+8]_68 chr6:52995843-52996343 4.4e-13 28_[+8]_50 chr1:109216581-109217081 4.4e-13 64_[+8]_14 chr8:144767168-144767668 7.1e-13 67_[+8]_11 chr9:136872448-136872948 1.2e-12 57_[+8]_21 chr19:2385416-2385916 1.2e-12 8_[-8]_70 chr6:28790355-28790855 1.5e-12 2_[-8]_76 chr19:36379255-36379755 8.2e-12 23_[+8]_55 chr17:5192021-5192521 1.8e-11 67_[+8]_11 chr4:123941-124441 1.8e-11 63_[-8]_15 chr10:68956696-68957196 2.3e-11 53_[-8]_25 chr6:27214046-27214546 2.9e-11 28_[+8]_50 chr14:49586371-49586871 3.3e-11 62_[-8]_16 chr17:16536366-16536866 5.9e-11 56_[-8]_22 chr22:40711332-40711832 7.6e-11 38_[-8]_40 chr17:49569585-49570085 8.6e-11 17_[+8]_61 chr12:56685285-56685785 9.8e-11 3_[+8]_75 chr14:21511470-21511970 9.8e-11 55_[+8]_23 chr19:33063994-33064494 1.2e-10 47_[-8]_31 chrX:1799849-1800349 1.4e-10 78_[-8] chr17:36535530-36536030 1.6e-10 15_[+8]_63 chr18:12701760-12702260 3.5e-10 73_[-8]_5 chr17:1258952-1259452 3.8e-10 27_[+8]_51 chr19:13747292-13747792 8e-10 66_[+8]_12 chr1:233843390-233843890 8.9e-10 16_[+8]_62 chr3:169762981-169763481 9.7e-10 45_[-8]_33 chr19:40403813-40404313 9.7e-10 13_[+8]_65 chr12:755612-756112 1.3e-09 70_[-8]_8 chr6:53559088-53559588 1.5e-09 65_[-8]_13 chr19:36796870-36797370 1.5e-09 44_[+8]_34 chr1:205734418-205734918 1.8e-09 48_[-8]_30 chr15:69453896-69454396 5.4e-09 20_[+8]_58 chr1:28373401-28373901 5.4e-09 47_[+8]_31 chr1:228103470-228103970 8.4e-09 37_[-8]_41 chr6:30907537-30908037 1.2e-08 6_[+8]_72 chr19:40832077-40832577 2.1e-08 36_[-8]_42 chr5:181218464-181218964 4e-08 69_[-8]_9 chr1:154295568-154296068 5.4e-08 53_[-8]_25 chr22:19648368-19648868 6.3e-08 42_[-8]_36 chr3:44532647-44533147 6.8e-08 20_[+8]_58 chr18:50961944-50962444 2.3e-07 28_[+8]_50 chr19:38162576-38163076 3.2e-06 27_[+8]_51 chr4:56977752-56978252 4.5e-06 2_[-8]_76 chr1:243230775-243231275 5.6e-06 73_[-8]_5 chr19:37317782-37318282 1.3e-05 38_[+8]_40 chr19:44211883-44212383 1.8e-05 29_[+8]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCYGGSYTCAAGYGATYCTC width=22 seqs=46 chr14:49862563-49863063 ( 11) CTCCTGGGCTCAAGCGATCCTC 1 chr6:52995843-52996343 ( 29) CTCCCGGGTTCAAGCGATTCTC 1 chr1:109216581-109217081 ( 65) CTCCTGGCCTCAAGCGATCCTC 1 chr8:144767168-144767668 ( 68) CTCCTGGGCTCAAGTGATCCTC 1 chr9:136872448-136872948 ( 58) CTCCCGGGTTCAAGTGATTCTC 1 chr19:2385416-2385916 ( 9) CTCCTGGCCTCAAGTGATCCTC 1 chr6:28790355-28790855 ( 3) CTCCTGAGTTCAAGCGATTCTC 1 chr19:36379255-36379755 ( 24) CTCCCGGGCTCAAGCGACCCTC 1 chr17:5192021-5192521 ( 68) CTCCCAGGTTCAAGCGATTCTC 1 chr4:123941-124441 ( 64) CTCCCGGGTTTAAGCGATTCTC 1 chr10:68956696-68957196 ( 54) CTCCCGGGTTCAAGCAATTCTC 1 chr6:27214046-27214546 ( 29) CTCCCCGGCTCAAGCGATTCTC 1 chr14:49586371-49586871 ( 63) CTCCTGGACTCAAGCGATCCTC 1 chr17:16536366-16536866 ( 57) CTCCCGGCTTCAAGCGATTCTT 1 chr22:40711332-40711832 ( 39) ATCCTGGGTTCAAGTGATCCTC 1 chr17:49569585-49570085 ( 18) CTCCCGGGTTGAAGCGATTCTC 1 chr12:56685285-56685785 ( 4) CTTCCGGGTTCAAGCCATTCTC 1 chr14:21511470-21511970 ( 56) CTCCCGGGTTCAAGTGATTATC 1 chr19:33063994-33064494 ( 48) TTCCTGGCCTCCAGCGATCCTC 1 chrX:1799849-1800349 ( 79) CTCCTGACCTCAAGTGATCCGC 1 chr17:36535530-36536030 ( 16) CCTCTGGGCTCAAGCGATCCTC 1 chr18:12701760-12702260 ( 74) CTCCCAGGTTTAAGCGATTCTC 1 chr17:1258952-1259452 ( 28) CTCCTGACCTCAAGAGATCCGC 1 chr19:13747292-13747792 ( 67) CTCCCGGGTTCAAGCAATTCTT 1 chr1:233843390-233843890 ( 17) TTCCTAGCTTCAAGTGATCCTC 1 chr3:169762981-169763481 ( 46) CTCCTGACCTCAGGTGATCCGC 1 chr19:40403813-40404313 ( 14) CTCCTGGGCCCAAGGGATCCTC 1 chr12:755612-756112 ( 71) CTGCTGGGTTCAAGATATTCTC 1 chr6:53559088-53559588 ( 66) CTCCTGACCTCAGGTGATCCAC 1 chr19:36796870-36797370 ( 45) CTCCCGGGTTCACGCCATTCTG 1 chr1:205734418-205734918 ( 49) CTCCTGACTTCAGGTGATCCAC 1 chr15:69453896-69454396 ( 21) CTCCCGGGTTCACGCCATTATC 1 chr1:28373401-28373901 ( 48) TTCCTTGGCTCAGGCGATCCTC 1 chr1:228103470-228103970 ( 38) CCTCCCGGCTCAAGTGATTCTC 1 chr6:30907537-30908037 ( 7) CTCCTGACCTCGGGTGATTCGC 1 chr19:40832077-40832577 ( 37) CTTGTGACCTCAAGCGATCCAC 1 chr5:181218464-181218964 ( 70) ATGCCGGGTTCACGCCATTCTC 1 chr1:154295568-154296068 ( 54) CTCCTGGTCTCCATTGTTTCTG 1 chr22:19648368-19648868 ( 43) CTTCTGGCCTCCATAGTTTCTG 1 chr3:44532647-44533147 ( 21) CTTCAGCGTTCAAGCAATTCTC 1 chr18:50961944-50962444 ( 29) CTTCTGGCTTTCATTGTTTCTG 1 chr19:38162576-38163076 ( 28) CTGCTGGGTCCCTGCGTCTTTC 1 chr4:56977752-56978252 ( 3) CTCCTGACCTCATGATCCGCCC 1 chr1:243230775-243231275 ( 74) TTTCTAGTCTCCATAGTTTCTG 1 chr19:37317782-37318282 ( 39) GTCCTGGCCTTCAGCGTCCGCG 1 chr19:44211883-44212383 ( 30) CTCCTGACCTCGTGATCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 6.80968 E= 4.1e-135 -260 184 -344 -160 -1217 -244 -1217 186 -1217 168 -186 -60 -1217 205 -344 -1217 -359 64 -1217 121 -160 -244 184 -359 -28 -344 168 -1217 -359 64 125 -260 -1217 114 -1217 86 -1217 -244 -1217 186 -1217 191 -344 -160 161 -64 -244 -1217 153 -186 -112 -201 -1217 -1217 195 -160 -101 120 -344 21 -201 -145 172 -201 165 -244 -1217 -101 -1217 -112 -1217 176 -1217 80 -244 105 -260 195 -344 -359 -201 -186 -145 157 -1217 180 -86 -260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 46 E= 4.1e-135 0.043478 0.847826 0.021739 0.086957 0.000000 0.043478 0.000000 0.956522 0.000000 0.760870 0.065217 0.173913 0.000000 0.978261 0.021739 0.000000 0.021739 0.369565 0.000000 0.608696 0.086957 0.043478 0.847826 0.021739 0.217391 0.021739 0.760870 0.000000 0.021739 0.369565 0.565217 0.043478 0.000000 0.521739 0.000000 0.478261 0.000000 0.043478 0.000000 0.956522 0.000000 0.891304 0.021739 0.086957 0.804348 0.152174 0.043478 0.000000 0.760870 0.065217 0.108696 0.065217 0.000000 0.000000 0.913043 0.086957 0.130435 0.543478 0.021739 0.304348 0.065217 0.086957 0.782609 0.065217 0.826087 0.043478 0.000000 0.130435 0.000000 0.108696 0.000000 0.891304 0.000000 0.413043 0.043478 0.543478 0.043478 0.913043 0.021739 0.021739 0.065217 0.065217 0.086957 0.782609 0.000000 0.826087 0.130435 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYGGSYTCAAGYGATYCTC MEME-8 regular expression -------------------------------------------------------------------------------- CTCC[TC]G[GA][GC][CT]TCAAG[CT]GAT[TC]CTC -------------------------------------------------------------------------------- Time 2676.50 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCTGCYRSAGCTCCAGCCAT MEME-9 width = 22 sites = 39 llr = 785 E-value = 1.4e-141 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 Description -------------------------------------------------------------------------------- Simplified A :11::::1316::2::81118: pos.-specific C 1::9::a313:191aa1:891: probability G :99::a:15429::::192::1 matrix T 8::1a::5222:17::1:::19 bits 2.1 * ** 1.9 *** ** 1.7 ****** ** * 1.5 ****** ** ** * * * Relative 1.2 ****** ** ** * *** Entropy 1.0 ******* ** ******** (29.0 bits) 0.8 ******* *********** 0.6 ******* *********** 0.4 ********* ************ 0.2 ********************** 0.0 ---------------------- Multilevel TGGCTGCTGGAGCTCCAGCCAT consensus CAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:17529182-17529682 + 46 4.04e-14 tggcacagaa tggctgctggagctccagccat tgggtccaca chr4:8551405-8551905 - 3 4.04e-14 TGCCACAATA TGGCTGCTGGAGCTCCAGCCAT CA chr14:100578461-10057896 - 40 3.69e-13 TGGTGCAAAA TGGCTGCCACAGCTCCAGCCAT CACTTCCATG chr17:1128416-1128916 - 31 4.45e-13 TGGTTCAGGA TGGCTGCTGGGGCTCCAGCCAT CCCATCAACT chr7:101536608-101537108 + 49 1.08e-12 gattataaag tggctgctgcagctccaggcat cacatcctca chr19:17528550-17529050 + 34 1.67e-12 tggcacagaa cggctgctggagctccagccat tgggtctaca chr19:11145454-11145954 + 48 2.10e-12 cgtggcagta tggctgccagggctccagccat cacacccaca chr19:17524568-17525068 + 43 3.83e-12 tggcccaagg tggctgcttgtgctccagccat tgtgtccacg chr11:69119145-69119645 - 52 3.83e-12 TAGTCTAAGA TGGCTGCAAGAGCTCCAGCCAT CACATCCACA chr19:17920468-17920968 + 58 6.79e-12 tgttgcagaa tggctgctgcagctccagacat cacattcaag chr12:104369623-10437012 + 14 9.74e-12 ggtcacaaaa tggctgctgtagttccagccat caagtctgta chr19:35208072-35208572 - 31 9.74e-12 GGTGGTAACG TGGCTGCCACAGCCCCAGCCAT CATTTCCTAT chr19:13701556-13702056 + 42 1.78e-11 gaccacaaaa tggctgcgagagcaccagccat catatccatg chr21:43937253-43937753 + 39 4.49e-11 GGTGACATCG TGGCTGCCTCTGCACCAGCCAT CACAACTTGA chrX:1418160-1418660 - 28 5.53e-11 TGGCCCAGAG TGGCTGCTGTAGCACCGGCCAT TGTGTCTACA chr19:45035676-45036176 + 68 5.53e-11 tggtgcaagg tggctgttgtagctccagccat tacgcccacg chr12:116890278-11689077 + 56 6.10e-11 ggcagcaaga tggctgccacagctccagctat cacatccttg chrX:2607900-2608400 + 71 6.79e-11 tgcttcgaac tggctgctgggactccagccat cacgtcat chr19:3656812-3657312 - 33 7.61e-11 TAGTCCAGTG TGGCTGCTGAGGTTCCAGCCAT CACATCAGCA chr5:1156651-1157151 + 56 7.61e-11 tcgtccacgg tggctgctgctggtccagccat cacatctgaa chr3:13265426-13265926 + 51 9.48e-11 caatccaaag tggctgcctaagccccagccat cacatcctca chr20:50219632-50220132 + 45 1.06e-10 ggtgccacga tggctgccaaagctcctgccat ctcttcctca chr19:5324931-5325431 + 26 2.08e-10 tggtccaaaa tggctgcctgagcacctgccat catctccata chr19:48120493-48120993 - 49 3.39e-10 CATCACAATG TGGCTGCAGGAGTTCCAGCCCT CATGGCCATG chr20:62233681-62234181 - 21 5.80e-10 TGGCCCAAAA CAGCTGCTGATGCTCCAGCCAT CACAAGCATA chr1:11064919-11065419 - 34 7.56e-10 TGGTGCAGGG TGACTGCCCTTGCTCCAGCCAT TACATTCTCA chr17:21232005-21232505 - 33 1.27e-09 GGTCACAAAA TGGCTGCTATGTCTCCAGGCAT CACACCCATA chr22:48869755-48870255 - 7 1.50e-09 GGGTCCAAGA TGGCTGCGTGTGCACCAACCAT CACGTG chr20:57248338-57248838 - 8 1.62e-09 GCTTACAAAA TGGCTGCTGCCGCCCCAGCCAG TTCATCC chr19:2409948-2410448 + 56 3.59e-09 CAGCTCAAAG TGGCTGCCAGGGCTCCGGCACT CTCACCCTGC chr19:16915086-16915586 - 35 6.51e-09 GGTGGCAAAA TGGCTGCAGCTGCTCCCAGCAT TGCATCACAT chr9:129200203-129200703 + 47 9.32e-09 ggtcacaaga tggctgcggcacctccgggcct cacatccatg chr19:5452962-5453462 - 29 1.07e-08 TGGGACAAGG CAGGTGCGTGAGCTCCAGCCAT CACATCTGCC chr10:130111715-13011221 - 25 1.61e-08 GGTGACAAAA AGGCTGCTGCAGCTCCAGGAAA CTTACACTGG chr19:17436052-17436552 - 35 1.61e-08 TGGCACAAAA TAATTGCCAGAGCTCCAGCCTT CACCTCCTCA chr4:2431931-2432431 + 53 1.73e-08 agtcactaaa tggctgccctacctccagcatt gcatctatat chr7:325757-326257 - 26 2.55e-08 GGGCACAAAA TAGCTGCTGCAGTGCCAGGCTT CACATCGCAT chr14:104817851-10481835 + 49 4.76e-08 ggtcacaaaa ggattgccacagctccagacat cacaccatgt chr19:36106991-36107491 + 54 1.75e-07 ggttgcaaca cggctgctgtggcacccagcag cacaccctca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:17529182-17529682 4e-14 45_[+9]_33 chr4:8551405-8551905 4e-14 2_[-9]_76 chr14:100578461-10057896 3.7e-13 39_[-9]_39 chr17:1128416-1128916 4.5e-13 30_[-9]_48 chr7:101536608-101537108 1.1e-12 48_[+9]_30 chr19:17528550-17529050 1.7e-12 33_[+9]_45 chr19:11145454-11145954 2.1e-12 47_[+9]_31 chr19:17524568-17525068 3.8e-12 42_[+9]_36 chr11:69119145-69119645 3.8e-12 51_[-9]_27 chr19:17920468-17920968 6.8e-12 57_[+9]_21 chr12:104369623-10437012 9.7e-12 13_[+9]_65 chr19:35208072-35208572 9.7e-12 30_[-9]_48 chr19:13701556-13702056 1.8e-11 41_[+9]_37 chr21:43937253-43937753 4.5e-11 38_[+9]_40 chrX:1418160-1418660 5.5e-11 27_[-9]_51 chr19:45035676-45036176 5.5e-11 67_[+9]_11 chr12:116890278-11689077 6.1e-11 55_[+9]_23 chrX:2607900-2608400 6.8e-11 70_[+9]_8 chr19:3656812-3657312 7.6e-11 32_[-9]_46 chr5:1156651-1157151 7.6e-11 55_[+9]_23 chr3:13265426-13265926 9.5e-11 50_[+9]_28 chr20:50219632-50220132 1.1e-10 44_[+9]_34 chr19:5324931-5325431 2.1e-10 25_[+9]_53 chr19:48120493-48120993 3.4e-10 48_[-9]_30 chr20:62233681-62234181 5.8e-10 20_[-9]_58 chr1:11064919-11065419 7.6e-10 33_[-9]_45 chr17:21232005-21232505 1.3e-09 32_[-9]_46 chr22:48869755-48870255 1.5e-09 6_[-9]_72 chr20:57248338-57248838 1.6e-09 7_[-9]_71 chr19:2409948-2410448 3.6e-09 55_[+9]_23 chr19:16915086-16915586 6.5e-09 34_[-9]_44 chr9:129200203-129200703 9.3e-09 46_[+9]_32 chr19:5452962-5453462 1.1e-08 28_[-9]_50 chr10:130111715-13011221 1.6e-08 24_[-9]_54 chr19:17436052-17436552 1.6e-08 34_[-9]_44 chr4:2431931-2432431 1.7e-08 52_[+9]_26 chr7:325757-326257 2.6e-08 25_[-9]_53 chr14:104817851-10481835 4.8e-08 48_[+9]_30 chr19:36106991-36107491 1.7e-07 53_[+9]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCTGCYRSAGCTCCAGCCAT width=22 seqs=39 chr19:17529182-17529682 ( 46) TGGCTGCTGGAGCTCCAGCCAT 1 chr4:8551405-8551905 ( 3) TGGCTGCTGGAGCTCCAGCCAT 1 chr14:100578461-10057896 ( 40) TGGCTGCCACAGCTCCAGCCAT 1 chr17:1128416-1128916 ( 31) TGGCTGCTGGGGCTCCAGCCAT 1 chr7:101536608-101537108 ( 49) TGGCTGCTGCAGCTCCAGGCAT 1 chr19:17528550-17529050 ( 34) CGGCTGCTGGAGCTCCAGCCAT 1 chr19:11145454-11145954 ( 48) TGGCTGCCAGGGCTCCAGCCAT 1 chr19:17524568-17525068 ( 43) TGGCTGCTTGTGCTCCAGCCAT 1 chr11:69119145-69119645 ( 52) TGGCTGCAAGAGCTCCAGCCAT 1 chr19:17920468-17920968 ( 58) TGGCTGCTGCAGCTCCAGACAT 1 chr12:104369623-10437012 ( 14) TGGCTGCTGTAGTTCCAGCCAT 1 chr19:35208072-35208572 ( 31) TGGCTGCCACAGCCCCAGCCAT 1 chr19:13701556-13702056 ( 42) TGGCTGCGAGAGCACCAGCCAT 1 chr21:43937253-43937753 ( 39) TGGCTGCCTCTGCACCAGCCAT 1 chrX:1418160-1418660 ( 28) TGGCTGCTGTAGCACCGGCCAT 1 chr19:45035676-45036176 ( 68) TGGCTGTTGTAGCTCCAGCCAT 1 chr12:116890278-11689077 ( 56) TGGCTGCCACAGCTCCAGCTAT 1 chrX:2607900-2608400 ( 71) TGGCTGCTGGGACTCCAGCCAT 1 chr19:3656812-3657312 ( 33) TGGCTGCTGAGGTTCCAGCCAT 1 chr5:1156651-1157151 ( 56) TGGCTGCTGCTGGTCCAGCCAT 1 chr3:13265426-13265926 ( 51) TGGCTGCCTAAGCCCCAGCCAT 1 chr20:50219632-50220132 ( 45) TGGCTGCCAAAGCTCCTGCCAT 1 chr19:5324931-5325431 ( 26) TGGCTGCCTGAGCACCTGCCAT 1 chr19:48120493-48120993 ( 49) TGGCTGCAGGAGTTCCAGCCCT 1 chr20:62233681-62234181 ( 21) CAGCTGCTGATGCTCCAGCCAT 1 chr1:11064919-11065419 ( 34) TGACTGCCCTTGCTCCAGCCAT 1 chr17:21232005-21232505 ( 33) TGGCTGCTATGTCTCCAGGCAT 1 chr22:48869755-48870255 ( 7) TGGCTGCGTGTGCACCAACCAT 1 chr20:57248338-57248838 ( 8) TGGCTGCTGCCGCCCCAGCCAG 1 chr19:2409948-2410448 ( 56) TGGCTGCCAGGGCTCCGGCACT 1 chr19:16915086-16915586 ( 35) TGGCTGCAGCTGCTCCCAGCAT 1 chr9:129200203-129200703 ( 47) TGGCTGCGGCACCTCCGGGCCT 1 chr19:5452962-5453462 ( 29) CAGGTGCGTGAGCTCCAGCCAT 1 chr10:130111715-13011221 ( 25) AGGCTGCTGCAGCTCCAGGAAA 1 chr19:17436052-17436552 ( 35) TAATTGCCAGAGCTCCAGCCTT 1 chr4:2431931-2432431 ( 53) TGGCTGCCCTACCTCCAGCATT 1 chr7:325757-326257 ( 26) TAGCTGCTGCAGTGCCAGGCTT 1 chr14:104817851-10481835 ( 49) GGATTGCCACAGCTCCAGACAT 1 chr19:36106991-36107491 ( 54) CGGCTGCTGTGGCACCCAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.4698 E= 1.4e-141 -336 -121 -320 169 -136 -1193 192 -1193 -177 -1193 196 -1193 -1193 196 -320 -236 -1193 -1193 -1193 193 -1193 -1193 208 -1193 -1193 204 -1193 -336 -177 49 -121 89 10 -221 111 -77 -136 49 70 -55 123 -320 -40 -55 -336 -221 192 -336 -1193 188 -320 -136 -77 -162 -320 150 -1193 208 -1193 -1193 -1193 208 -1193 -1193 164 -221 -162 -236 -177 -1193 196 -1193 -236 170 -40 -1193 -177 192 -1193 -336 169 -162 -1193 -177 -336 -1193 -221 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 39 E= 1.4e-141 0.025641 0.102564 0.025641 0.846154 0.102564 0.000000 0.897436 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 0.923077 0.025641 0.051282 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.974359 0.000000 0.025641 0.076923 0.333333 0.102564 0.487179 0.282051 0.051282 0.512821 0.153846 0.102564 0.333333 0.384615 0.179487 0.615385 0.025641 0.179487 0.179487 0.025641 0.051282 0.897436 0.025641 0.000000 0.871795 0.025641 0.102564 0.153846 0.076923 0.025641 0.743590 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.820513 0.051282 0.076923 0.051282 0.076923 0.000000 0.923077 0.000000 0.051282 0.769231 0.179487 0.000000 0.076923 0.897436 0.000000 0.025641 0.846154 0.076923 0.000000 0.076923 0.025641 0.000000 0.051282 0.923077 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTGCYRSAGCTCCAGCCAT MEME-9 regular expression -------------------------------------------------------------------------------- TGGCTGC[TC][GA][GC]AGCTCCAGCCAT -------------------------------------------------------------------------------- Time 2982.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 width = 27 sites = 20 llr = 579 E-value = 1.3e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 Description -------------------------------------------------------------------------------- Simplified A :a1:::a:::a:911:a:13:a:18a3 pos.-specific C ::1::a:a:a:1:999:16:::3:117 probability G a:9:a:1::::921::1a:7a:::::: matrix T 1::a11:1a111:112::411:8a2:1 bits 2.1 1.9 ** *** *** * ** 1.7 ** ******** ** ** * * 1.5 ************ **** ** * * Relative 1.2 ****************** **** * Entropy 1.0 ****************** ******* (41.7 bits) 0.8 *************************** 0.6 *************************** 0.4 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel GAGTGCACTCAGACCCAGCGGATTAAC consensus TA C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr4:41024866-41025366 - 9 4.58e-17 GATTTTTATT GAGTGCACTCAGACCCAGCGGATTAAC ATCCAAAA chr14:103204669-10320516 + 42 9.66e-17 gaattttatt gagtgcactcagacccagtggattaac atccaaaaac chr19:21519424-21519924 - 52 9.66e-17 GGATTTTATT GAGTGCACTCAGACCCAGTGGATTAAC ATCCAGAGAC chr1:151907323-151907823 - 49 1.89e-16 GAACTTTATT GAGTGCACTCAGACCCAGCGGACTAAC ATCCAAAAGC chr19:37364890-37365390 + 55 1.00e-15 aggatttatt gagtgcactcagacccagaggattaac atccaaaaac chr21:38223839-38224339 + 60 1.83e-15 ggattttatt gagtgcactcagacccggcggattaac atccaaaggc chr4:25223688-25224188 + 54 8.83e-15 aggatttatt gagtgcactcagaaccagcagattaac atccgaaaac chr1:17155175-17155675 + 54 1.71e-14 gatctttatt gagtgcactcagacccagcagacttaa catccaaaaa chr13:41148614-41149114 - 46 2.52e-14 GGATTTTTTT TAGTGCACTCAGACCCAGTGGATTTAC ATCCAAAATT chr7:138527584-138528084 + 48 3.78e-14 ggattttatt gagtgcactcatacccagcggattaat atccaaagac chr5:117713541-117714041 - 33 7.49e-14 GGACATTACT GAGTGCACTCACATCCAGTGGATTAAC ATCCAGCGAC chr7:97439599-97440099 + 40 8.94e-14 aggatttatt gaattcactcagacccagtggattaac atccaaagac chr22:19316652-19317152 - 29 1.42e-13 GGATGTTATT GAGTGCACTCTGGCCTAGTGGATTAAC ATCCAAAGAC chr10:56370681-56371181 - 26 3.16e-13 GATCTTTAGT GAGTGCACTCAGACCTAGCATACTAAA AACTGGACTA chr19:16882053-16882553 - 53 3.16e-13 GATCTTTATT GAGTGCACTCAGACCCACTGGACTCAA CGTCTAAAAA chr21:38229206-38229706 + 54 6.05e-13 ggattttatt gagtgtgctcaggcccagcagattaac aaccaaaggc chr1:16506315-16506815 + 17 6.59e-13 aggatttatt gactgcactcaggcacagtggattaaa atccaaaagc chr6:88031515-88032015 - 16 7.73e-13 GATGTTTATT GAGTGCACTTAGACTTAGCAGATTAAC ATCCAAAAAC chr8:43124356-43124856 + 20 1.07e-12 gatttttatt gagtgcactcagacccagctgataaca ttcaaaaact chr2:239917558-239918058 - 18 1.07e-12 GATCTTTACT GAGTGCATTCAGAGCCAGCGGACTTAA CATCTGGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:41024866-41025366 4.6e-17 8_[-10]_65 chr14:103204669-10320516 9.7e-17 41_[+10]_32 chr19:21519424-21519924 9.7e-17 51_[-10]_22 chr1:151907323-151907823 1.9e-16 48_[-10]_25 chr19:37364890-37365390 1e-15 54_[+10]_19 chr21:38223839-38224339 1.8e-15 59_[+10]_14 chr4:25223688-25224188 8.8e-15 53_[+10]_20 chr1:17155175-17155675 1.7e-14 53_[+10]_20 chr13:41148614-41149114 2.5e-14 45_[-10]_28 chr7:138527584-138528084 3.8e-14 47_[+10]_26 chr5:117713541-117714041 7.5e-14 32_[-10]_41 chr7:97439599-97440099 8.9e-14 39_[+10]_34 chr22:19316652-19317152 1.4e-13 28_[-10]_45 chr10:56370681-56371181 3.2e-13 25_[-10]_48 chr19:16882053-16882553 3.2e-13 52_[-10]_21 chr21:38229206-38229706 6e-13 53_[+10]_20 chr1:16506315-16506815 6.6e-13 16_[+10]_57 chr6:88031515-88032015 7.7e-13 15_[-10]_58 chr8:43124356-43124856 1.1e-12 19_[+10]_54 chr2:239917558-239918058 1.1e-12 17_[-10]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGTGCACTCAGACCCAGYGGATTAAC width=27 seqs=20 chr4:41024866-41025366 ( 9) GAGTGCACTCAGACCCAGCGGATTAAC 1 chr14:103204669-10320516 ( 42) GAGTGCACTCAGACCCAGTGGATTAAC 1 chr19:21519424-21519924 ( 52) GAGTGCACTCAGACCCAGTGGATTAAC 1 chr1:151907323-151907823 ( 49) GAGTGCACTCAGACCCAGCGGACTAAC 1 chr19:37364890-37365390 ( 55) GAGTGCACTCAGACCCAGAGGATTAAC 1 chr21:38223839-38224339 ( 60) GAGTGCACTCAGACCCGGCGGATTAAC 1 chr4:25223688-25224188 ( 54) GAGTGCACTCAGAACCAGCAGATTAAC 1 chr1:17155175-17155675 ( 54) GAGTGCACTCAGACCCAGCAGACTTAA 1 chr13:41148614-41149114 ( 46) TAGTGCACTCAGACCCAGTGGATTTAC 1 chr7:138527584-138528084 ( 48) GAGTGCACTCATACCCAGCGGATTAAT 1 chr5:117713541-117714041 ( 33) GAGTGCACTCACATCCAGTGGATTAAC 1 chr7:97439599-97440099 ( 40) GAATTCACTCAGACCCAGTGGATTAAC 1 chr22:19316652-19317152 ( 29) GAGTGCACTCTGGCCTAGTGGATTAAC 1 chr10:56370681-56371181 ( 26) GAGTGCACTCAGACCTAGCATACTAAA 1 chr19:16882053-16882553 ( 53) GAGTGCACTCAGACCCACTGGACTCAA 1 chr21:38229206-38229706 ( 54) GAGTGTGCTCAGGCCCAGCAGATTAAC 1 chr1:16506315-16506815 ( 17) GACTGCACTCAGGCACAGTGGATTAAA 1 chr6:88031515-88032015 ( 16) GAGTGCACTTAGACTTAGCAGATTAAC 1 chr8:43124356-43124856 ( 20) GAGTGCACTCAGACCCAGCTGATAACA 1 chr2:239917558-239918058 ( 18) GAGTGCATTCAGAGCCAGCGGACTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 44400 bayes= 10.5498 E= 1.3e-114 -1097 -1097 200 -239 193 -1097 -1097 -1097 -239 -224 193 -1097 -1097 -1097 -1097 193 -1097 -1097 200 -239 -1097 200 -1097 -239 185 -1097 -224 -1097 -1097 200 -1097 -239 -1097 -1097 -1097 193 -1097 200 -1097 -239 185 -1097 -1097 -239 -1097 -224 193 -239 169 -1097 -66 -1097 -239 184 -224 -239 -239 193 -1097 -239 -1097 184 -1097 -81 185 -1097 -224 -1097 -1097 -224 200 -1097 -239 121 -1097 60 -7 -1097 156 -239 -1097 -1097 200 -239 193 -1097 -1097 -1097 -1097 8 -1097 151 -239 -1097 -1097 185 160 -224 -1097 -81 185 -224 -1097 -1097 19 146 -1097 -239 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 20 E= 1.3e-114 0.000000 0.000000 0.950000 0.050000 1.000000 0.000000 0.000000 0.000000 0.050000 0.050000 0.900000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.050000 0.000000 0.950000 0.000000 0.050000 0.950000 0.000000 0.050000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 0.000000 1.000000 0.000000 0.950000 0.000000 0.050000 0.950000 0.000000 0.000000 0.050000 0.000000 0.050000 0.900000 0.050000 0.850000 0.000000 0.150000 0.000000 0.050000 0.850000 0.050000 0.050000 0.050000 0.900000 0.000000 0.050000 0.000000 0.850000 0.000000 0.150000 0.950000 0.000000 0.050000 0.000000 0.000000 0.050000 0.950000 0.000000 0.050000 0.550000 0.000000 0.400000 0.250000 0.000000 0.700000 0.050000 0.000000 0.000000 0.950000 0.050000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.050000 0.000000 0.000000 0.950000 0.800000 0.050000 0.000000 0.150000 0.950000 0.050000 0.000000 0.000000 0.300000 0.650000 0.000000 0.050000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTGCACTCAGACCCAGYGGATTAAC MEME-10 regular expression -------------------------------------------------------------------------------- GAGTGCACTCAGACCCAG[CT][GA]GA[TC]TAA[CA] -------------------------------------------------------------------------------- Time 3282.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:174362460-174362960 7.27e-07 45_[+7(6.64e-08)]_[+2(6.52e-08)]_20 chr6:139977759-139978259 5.32e-02 100 chr15:67285574-67286074 7.35e-10 21_[+4(1.46e-12)]_1_[-2(1.17e-08)]_\ 28 chr10:87845992-87846492 1.50e-01 57_[-2(9.58e-06)]_24 chr9:131543098-131543598 7.01e-01 100 chr1:203234862-203235362 8.47e-01 100 chrX:74701281-74701781 5.82e-09 19_[+7(4.67e-09)]_[+2(7.07e-09)]_46 chr4:2008599-2009099 2.22e-01 55_[+3(6.73e-05)]_23 chr18:13597061-13597561 5.71e-01 100 chr5:140719038-140719538 7.23e-20 15_[-3(4.03e-10)]_13_[+5(1.57e-12)]_\ [+1(1.93e-12)]_6 chr22:35589359-35589859 3.42e-01 100 chr15:70373340-70373840 8.87e-18 10_[+2(7.07e-09)]_10_[+3(5.52e-14)]_\ 3_[+6(1.62e-11)]_16 chr22:46658962-46659462 4.10e-01 100 chr4:2431931-2432431 2.80e-05 52_[+9(1.73e-08)]_2_[-3(6.91e-05)]_\ 2 chr3:123585155-123585655 4.82e-01 100 chr4:123941-124441 3.25e-19 15_[+5(8.54e-11)]_[+1(1.35e-13)]_4_\ [-8(1.78e-11)]_15 chr19:41225607-41226107 9.16e-01 100 chr19:5499537-5500037 6.88e-01 100 chr17:81393814-81394314 1.52e-01 100 chr19:17436052-17436552 3.51e-03 34_[-9(1.61e-08)]_44 chr12:111304526-11130502 7.92e-01 100 chr19:49945779-49946279 3.56e-17 22_[-3(5.52e-14)]_8_[-2(4.64e-09)]_\ [-7(3.11e-10)]_13 chr17:17752408-17752908 6.87e-01 100 chr5:85484921-85485421 6.12e-01 100 chr10:94673507-94674007 1.54e-01 100 chr17:78862585-78863085 1.87e-04 56_[-6(1.65e-10)]_24 chr7:130258463-130258963 7.61e-01 100 chr12:130765230-13076573 6.23e-01 100 chrX:101408062-101408562 1.65e-01 100 chrX:149022410-149022910 1.42e-10 37_[+2(1.70e-07)]_1_[-4(1.38e-14)]_\ 12 chr9:83987078-83987578 1.11e-09 27_[-1(2.88e-10)]_[-5(1.16e-11)]_29 chrX:1799849-1800349 6.48e-16 26_[+5(3.98e-12)]_[+1(3.59e-10)]_8_\ [-8(1.36e-10)] chr19:34023320-34023820 3.28e-01 100 chr19:34999773-35000273 1.31e-01 100 chr5:1156651-1157151 6.90e-06 11_[+9(1.91e-05)]_22_[+9(7.61e-11)]_\ 23 chr15:77400258-77400758 9.86e-07 8_[+2(1.38e-11)]_47_[+7(7.60e-05)]_\ 10 chr19:21519424-21519924 5.04e-10 51_[-10(9.66e-17)]_22 chr1:17758966-17759466 4.53e-01 100 chr9:129330804-129331304 4.69e-01 100 chr19:40750102-40750602 1.29e-01 43_[-8(4.01e-05)]_35 chr21:43708872-43709372 7.58e-02 100 chr19:5452962-5453462 2.74e-04 28_[-9(1.07e-08)]_50 chr1:68384234-68384734 2.78e-01 65_[+5(9.98e-05)]_13 chr12:48468926-48469426 1.12e-01 9_[+3(3.14e-05)]_69 chr19:4670675-4671175 5.28e-13 11_[+8(8.39e-09)]_8_[-1(8.52e-14)]_\ [-5(3.90e-07)]_15 chr4:56977752-56978252 1.44e-05 2_[-8(4.55e-06)]_29_[-3(1.03e-08)]_\ 25 chr3:15386184-15386684 5.17e-01 100 chr22:39276941-39277441 2.55e-05 34_[+7(8.16e-07)]_[+2(4.78e-06)]_31 chr20:45971342-45971842 3.43e-01 100 chr20:63486249-63486749 3.91e-01 100 chr5:38516646-38517146 1.01e-23 4_[+7(1.62e-08)]_[+2(4.60e-12)]_10_\ [+3(2.64e-11)]_3_[+6(9.37e-11)]_6 chr12:56882313-56882813 3.16e-02 19_[+1(7.48e-05)]_59 chr5:553453-553953 9.49e-01 100 chr1:225232883-225233383 6.49e-25 3_[-6(1.02e-09)]_3_[-3(4.67e-13)]_\ 10_[-2(2.74e-10)]_[-7(3.11e-10)]_7 chr6:101003058-101003558 4.18e-01 100 chr1:226308757-226309257 5.14e-01 39_[+9(7.72e-05)]_39 chr10:73166911-73167411 4.50e-11 46_[+4(4.46e-16)]_1_[-2(3.72e-06)]_\ 3 chr19:37654866-37655366 6.15e-01 100 chr1:9164190-9164690 3.32e-07 28_[-3(2.70e-07)]_11_[+5(1.76e-10)]_\ 17 chr6:16128374-16128874 2.71e-13 18_[-1(1.77e-12)]_[-5(1.06e-12)]_38 chr5:134284405-134284905 3.12e-01 100 chr11:78188220-78188720 8.93e-02 51_[+6(5.76e-05)]_29 chr20:45400560-45401060 8.47e-01 100 chr22:39221913-39222413 5.90e-02 100 chr10:98134128-98134628 8.80e-01 100 chr17:30717371-30717871 1.95e-01 100 chr7:100428098-100428598 2.57e-01 100 chr19:37467451-37467951 5.45e-01 100 chr22:36482231-36482731 1.44e-17 14_[-1(2.41e-12)]_[-5(3.59e-12)]_11_\ [+3(2.69e-09)]_9 chr6:5323907-5324407 9.99e-01 100 chr19:12198085-12198585 5.71e-03 29_[-2(1.70e-07)]_52 chr1:234700053-234700553 3.96e-01 100 chr3:171715097-171715597 2.77e-13 17_[+4(2.76e-17)]_1_[-2(4.14e-08)]_\ 32 chr22:38506698-38507198 9.34e-02 73_[+10(6.70e-05)] chr6:28809260-28809760 6.15e-12 54_[+5(3.93e-11)]_[+1(1.77e-12)]_2 chr17:82548000-82548500 1.60e-01 100 chr10:92857869-92858369 1.66e-01 100 chrX:84796256-84796756 5.21e-14 18_[+7(3.11e-10)]_[+2(1.36e-07)]_10_\ [+3(2.68e-10)]_15 chr12:94813274-94813774 3.49e-01 100 chr10:130111715-13011221 1.62e-03 24_[-9(1.61e-08)]_54 chrX:53225083-53225583 4.90e-01 100 chr5:17357437-17357937 2.09e-13 18_[-3(1.40e-10)]_10_[-2(1.48e-09)]_\ [-7(8.62e-08)]_15 chr4:473781-474281 2.99e-01 100 chr3:191646218-191646718 1.68e-15 4_[+2(3.46e-10)]_9_[+3(2.42e-11)]_3_\ [+6(2.66e-08)]_23 chr3:170338644-170339144 2.56e-01 100 chr20:50818230-50818730 7.88e-01 100 chr17:5192021-5192521 1.91e-05 67_[+8(1.78e-11)]_11 chr6:27214046-27214546 1.94e-09 28_[+8(2.94e-11)]_8_[-1(1.42e-10)]_\ 20 chr17:80155465-80155965 4.12e-02 70_[+10(3.66e-05)]_3 chr1:223285390-223285890 3.16e-10 43_[+7(2.50e-07)]_[+2(4.60e-12)]_22 chr19:45405010-45405510 3.93e-02 100 chr1:223283671-223284171 2.51e-25 3_[+7(5.23e-09)]_[+2(1.38e-11)]_10_\ [+3(1.16e-13)]_3_[+6(3.09e-11)]_7 chr17:63842549-63843049 4.55e-01 24_[+8(1.32e-05)]_54 chr2:148221865-148222365 6.32e-09 53_[+4(3.67e-16)]_16 chr3:176093856-176094356 3.29e-18 15_[+7(9.94e-09)]_[+2(7.08e-11)]_10_\ [+3(5.52e-14)]_18 chr19:4730757-4731257 8.14e-01 100 chr22:26484031-26484531 3.95e-01 100 chr19:42760495-42760995 7.56e-14 5_[-1(2.20e-13)]_[-5(2.79e-07)]_12_\ [+3(4.06e-09)]_17 chr3:133792075-133792575 8.62e-01 100 chr14:104329725-10433022 1.00e-01 42_[-4(5.44e-06)]_27 chr1:243528326-243528826 3.30e-02 77_[-6(2.74e-06)]_3 chr20:57248338-57248838 3.58e-04 7_[-9(1.62e-09)]_71 chr20:32761750-32762250 3.39e-01 100 chr15:75142431-75142931 1.98e-01 100 chr19:6157703-6158203 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chr8:143784688-143785188 5.03e-01 100 chr1:27181831-27182331 9.94e-01 100 chr10:3314579-3315079 2.66e-01 100 chrX:1447315-1447815 7.99e-01 100 chr1:205734418-205734918 2.61e-10 18_[+1(1.77e-12)]_8_[-8(1.77e-09)]_\ 30 chr20:62233681-62234181 2.42e-05 20_[-9(5.80e-10)]_25_[+6(3.49e-05)]_\ 13 chrX:73944020-73944520 5.79e-01 100 chr19:38851416-38851916 4.19e-11 3_[+5(5.83e-11)]_[+1(3.12e-11)]_53 chr1:154295568-154296068 5.75e-03 53_[-8(5.40e-08)]_25 chr22:49767183-49767683 2.13e-02 67_[+8(4.35e-05)]_11 chr8:630804-631304 2.86e-01 100 chr6:88031515-88032015 6.96e-06 15_[-10(7.73e-13)]_58 chr19:45035676-45036176 2.92e-04 67_[+9(5.53e-11)]_11 chr12:755612-756112 6.01e-16 18_[+5(1.76e-12)]_[+1(1.20e-10)]_8_\ [-8(1.32e-09)]_8 chr8:144767168-144767668 3.35e-11 17_[+3(4.33e-09)]_28_[+8(7.11e-13)]_\ 11 chrUn_KI270467v1:2685-31 4.54e-03 53_[+7(1.29e-06)]_31 chr19:4869933-4870433 7.42e-03 3_[-8(1.32e-05)]_32_[-5(6.66e-05)]_\ 21 chr12:130584379-13058487 1.00e+00 100 chr21:38229206-38229706 4.91e-09 53_[+10(6.05e-13)]_20 chr19:55216229-55216729 5.57e-04 11_[-5(1.16e-10)]_67 chr9:136872448-136872948 1.38e-06 57_[+8(1.22e-12)]_21 chr1:236261836-236262336 8.84e-13 48_[+2(2.08e-06)]_1_[-4(2.17e-18)]_\ 1 chr19:36898383-36898883 3.53e-09 23_[+2(9.91e-07)]_1_[-4(2.67e-15)]_\ 26 chr19:37371248-37371748 3.04e-01 100 chr8:11201417-11201917 8.86e-01 100 chr17:4143133-4143633 9.07e-18 16_[-3(9.30e-10)]_10_[+5(1.16e-10)]_\ [+1(1.35e-13)]_8 chr19:13277010-13277510 6.23e-01 100 chr11:1418317-1418817 9.16e-01 100 chr17:26603650-26604150 3.36e-01 100 chr17:27695196-27695696 2.38e-03 2_[+1(5.43e-06)]_29_[-2(5.93e-05)]_\ 28 chr10:93209019-93209519 9.41e-01 100 chr13:62642899-62643399 3.20e-01 100 chr9:137294294-137294794 7.20e-01 100 chr19:434128-434628 6.39e-01 100 chr7:325757-326257 3.25e-02 25_[-9(2.55e-08)]_53 chr17:8200234-8200734 8.15e-05 25_[-8(4.71e-05)]_28_[-3(2.69e-09)]_\ 3 chr19:44476465-44476965 1.01e-01 52_[+9(3.00e-05)]_26 chr6:3734994-3735494 2.17e-10 13_[+2(1.12e-06)]_1_[-4(2.63e-16)]_\ 36 chr19:34651657-34652157 2.11e-14 23_[+2(5.19e-09)]_1_[-4(1.41e-17)]_\ 26 chr5:32187615-32188115 7.76e-13 29_[+2(5.95e-07)]_1_[-4(1.05e-17)]_\ 20 chr19:57566350-57566850 5.74e-01 100 chr19:36916420-36916920 6.79e-01 100 chr8:144456655-144457155 8.08e-01 100 chr5:1950711-1951211 2.06e-01 100 chr19:4576139-4576639 6.58e-01 100 chr10:90136680-90137180 2.69e-01 100 chr19:37655854-37656354 3.35e-01 100 chr19:13747292-13747792 2.54e-05 66_[+8(7.96e-10)]_12 chr7:149529057-149529557 1.79e-01 100 chr1:29379385-29379885 5.50e-01 100 chr22:19316652-19317152 9.18e-07 28_[-10(1.42e-13)]_45 chrX:1418160-1418660 7.78e-05 27_[-9(5.53e-11)]_51 chr17:36535530-36536030 1.10e-08 15_[+8(1.57e-10)]_19_[-5(6.78e-11)]_\ 22 chr19:6291976-6292476 3.73e-01 21_[+9(7.49e-05)]_57 chr17:74513899-74514399 9.99e-01 100 chr7:139339837-139340337 7.35e-05 18_[+3(1.69e-10)]_60 chr19:43901818-43902318 1.26e-01 100 chr1:224932550-224933050 3.99e-11 39_[+4(9.77e-15)]_1_[-2(5.19e-09)]_\ 10 chr19:43655700-43656200 3.31e-05 75_[+5(6.29e-12)]_3 chr21:45586393-45586893 1.45e-01 100 chr12:55829069-55829569 2.17e-15 31_[+5(2.71e-12)]_[+1(8.52e-14)]_25 chr13:41148614-41149114 9.13e-08 45_[-10(2.52e-14)]_28 chr3:171854572-171855072 8.36e-01 100 chr22:37844476-37844976 5.56e-20 11_[-1(8.52e-14)]_[-5(3.12e-13)]_11_\ [+3(4.03e-10)]_12 chr17:21232005-21232505 2.46e-03 32_[-9(1.27e-09)]_46 chr18:80022589-80023089 4.51e-01 100 chr1:37554333-37554833 3.69e-18 13_[-3(4.03e-10)]_11_[+5(1.96e-12)]_\ [+1(3.12e-11)]_10 chr17:78558308-78558808 1.28e-01 71_[+6(8.65e-05)]_9 chr13:110965225-11096572 5.90e-01 100 chr19:38544182-38544682 9.18e-01 100 chr1:3992041-3992541 9.41e-01 100 chr19:2648559-2649059 5.55e-03 34_[+9(1.56e-05)]_44 chr17:77233745-77234245 7.35e-03 53_[+2(8.62e-05)]_28 chr11:1418117-1418617 9.82e-01 100 chr1:125179946-125180446 7.03e-01 100 chr1:236097028-236097528 8.90e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************