# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:09:24 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280D.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:09:25 PDT 2018) # host: kadru # when: Thu May 10 18:04:20 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.252 C 0.238 G 0.245 T 0.265 MOTIF GCAGCCAY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GCAGCCAY RTGGCTGC 94 7 2.4e-022 7.2e-018 # GCAGCCAT ATGGCTGC 72 2 1.7e-020 5.2e-016 # GCAGCCAC GTGGCTGC 22 5 6.7e-004 2.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 7.2e-018 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.240000 0.000000 0.760000 MOTIF GGAHTAC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGAHTAC GTADTCC 90 6 5.3e-022 1.6e-017 # GGAATAC GTATTCC 48 2 4.6e-013 1.4e-008 # GGATTAC GTAATCC 28 3 1.8e-006 5.4e-002 # GGACTAC GTAGTCC 15 1 2.4e-004 7.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 91 E= 1.6e-017 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.527473 0.164835 0.000000 0.307692 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGGMTGAG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGGMTGAG CTCAKCCT 78 7 1.5e-017 4.5e-013 # AGGCTGAG CTCAGCCT 48 5 1.6e-010 4.8e-006 # AGGATGAG CTCATCCT 30 2 8.9e-008 2.7e-003 letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 4.5e-013 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.370370 0.629630 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGACATGR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GGACATGR YCATGTCC 53 1 9.6e-016 2.9e-011 # GGACATGA TCATGTCC 44 1 6.0e-013 1.8e-008 # GGACATGG CCATGTCC 37 0 4.1e-012 1.2e-007 letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.9e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.547619 0.000000 0.452381 0.000000 MOTIF CAGCMTGG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CAGCMTGG CCAKGCTG 51 4 4.0e-012 1.2e-007 # CAGCATGG CCATGCTG 32 4 7.0e-007 2.1e-002 # CAGCCTGG CCAGGCTG 19 0 1.7e-006 4.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.2e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.627451 0.372549 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATASACCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATASACCA TGGTSTAT 34 1 6.7e-010 2.0e-005 # ATACACCA TGGTGTAT 19 0 1.7e-006 4.9e-002 # ATAGACCA TGGTCTAT 15 1 2.4e-004 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 2.0e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.558824 0.441176 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGRAGC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATGRAGC GCTYCAT 52 8 1.1e-009 3.3e-005 # ATGAAGC GCTTCAT 37 6 5.5e-007 1.6e-002 # ATGGAGC GCTCCAT 15 2 1.1e-003 3.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 55 E= 3.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.672727 0.000000 0.327273 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TAAAAAYA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TAAAAAYA TRTTTTTA 49 7 1.7e-009 5.2e-005 # TAAAAATA TATTTTTA 26 2 1.2e-006 3.5e-002 # TAAAAACA TGTTTTTA 23 5 4.0e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 5.2e-005 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.469388 0.000000 0.530612 1.000000 0.000000 0.000000 0.000000 MOTIF GGTGGCKC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GGTGGCKC GMGCCACC 38 3 3.1e-009 9.2e-005 # GGTGGCGC GCGCCACC 21 1 4.7e-006 1.4e-001 # GGTGGCTC GAGCCACC 17 2 3.3e-004 9.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 9.2e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.552632 0.447368 0.000000 1.000000 0.000000 0.000000 MOTIF ATYCTCC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ATYCTCC GGAGRAT 58 12 4.5e-009 1.3e-004 # ATCCTCC GGAGGAT 34 7 9.3e-006 2.7e-001 # ATTCTCC GGAGAAT 25 5 1.4e-004 4.1e+000 letter-probability matrix: alength= 4 w= 7 nsites= 59 E= 1.3e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.576271 0.000000 0.423729 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TAGAGA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST TAGAGA TCTCTA 67 18 1.4e-008 4.2e-004 # TAGAGA TCTCTA 67 18 1.4e-008 4.2e-004 letter-probability matrix: alength= 4 w= 6 nsites= 70 E= 4.2e-004 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGKGCAC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST GAGKGCAC GTGCMCTC 25 0 2.3e-008 6.7e-004 # GAGTGCAC GTGCACTC 17 0 6.8e-006 2.0e-001 # GAGGGCAC GTGCCCTC 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 6.7e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.320000 0.680000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARCCATCA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ARCCATCA TGATGGYT 42 6 2.9e-008 8.5e-004 # AGCCATCA TGATGGCT 20 2 5.3e-005 1.5e+000 # AACCATCA TGATGGTT 22 4 2.3e-004 6.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 8.5e-004 1.000000 0.000000 0.000000 0.000000 0.523810 0.000000 0.476190 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAAAGCTA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CAAAGCTA TAGCTTTG 27 1 8.2e-008 2.4e-003 # CAAAGCTA TAGCTTTG 27 1 8.2e-008 2.4e-003 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.4e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCCTCCC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST GCCTCCC GGGAGGC 49 11 2.0e-007 5.9e-003 # GCCTCCC GGGAGGC 49 11 2.0e-007 5.9e-003 letter-probability matrix: alength= 4 w= 7 nsites= 54 E= 5.9e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGCTACT DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AGCTACT AGTAGCT 33 4 3.8e-007 1.1e-002 # AGCTACT AGTAGCT 33 4 3.8e-007 1.1e-002 letter-probability matrix: alength= 4 w= 7 nsites= 33 E= 1.1e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AATGTGG DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AATGTGG CCACATT 37 6 5.5e-007 1.6e-002 # AATGTGG CCACATT 37 6 5.5e-007 1.6e-002 letter-probability matrix: alength= 4 w= 7 nsites= 40 E= 1.6e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 76.39 seconds