# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280C.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280C.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280C.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280C.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:16:13 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF280C.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:16:13 PST 2017) # host: kadru # when: Mon Dec 18 16:32:52 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.252 C 0.236 G 0.257 T 0.255 MOTIF ACCACCAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ACCACCAT ATGGTGGT 62 10 4.1e-011 1.1e-006 # ACCACCAT ATGGTGGT 62 10 4.1e-011 1.1e-006 letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 1.1e-006 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GGGAGGCY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGGAGGCY RGCCTCCC 36 2 1.7e-009 4.4e-005 # GGGAGGCC GGCCTCCC 18 0 3.4e-006 8.9e-002 # GGGAGGCT AGCCTCCC 19 2 9.8e-005 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 4.4e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.486486 0.000000 0.513514 MOTIF GGATTAC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGATTAC GTAATCC 26 0 1.1e-008 3.0e-004 # GGATTAC GTAATCC 26 0 1.1e-008 3.0e-004 letter-probability matrix: alength= 4 w= 7 nsites= 27 E= 3.0e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AWACAAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AWACAAAA TTTTGTWT 28 1 4.1e-008 1.1e-003 # ATACAAAA TTTTGTAT 19 1 1.8e-005 4.6e-001 # AAACAAAA TTTTGTTT 9 0 1.9e-003 5.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.1e-003 1.000000 0.000000 0.000000 0.000000 0.366667 0.000000 0.000000 0.633333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGCSTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTGCSTC GASGCAG 37 5 1.4e-007 3.8e-003 # CTGCCTC GAGGCAG 30 5 8.6e-006 2.3e-001 # CTGCGTC GACGCAG 7 0 7.7e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 37 E= 3.8e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.810811 0.189189 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCTGGCYA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCTGGCYA TRGCCAGG 22 0 2.0e-007 5.1e-003 # CCTGGCCA TGGCCAGG 12 0 2.3e-004 6.1e+000 # CCTGGCTA TAGCCAGG 12 0 2.3e-004 6.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.1e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.520000 0.000000 0.480000 1.000000 0.000000 0.000000 0.000000 MOTIF ATAGTRA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATAGTRA TYACTAT 30 3 5.2e-007 1.4e-002 # ATAGTGA TCACTAT 22 3 6.8e-005 1.8e+000 # ATAGTAA TTACTAT 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 37 E= 1.4e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.216216 0.000000 0.783784 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCTAYCCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TCTAYCCA TGGRTAGA 27 2 6.3e-007 1.6e-002 # TCTATCCA TGGATAGA 21 1 4.7e-006 1.2e-001 # TCTACCCA TGGGTAGA 12 1 1.6e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.6e-002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.361111 0.000000 0.638889 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGMTCAC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GGMTCAC GTGAKCC 40 8 1.1e-006 2.8e-002 # GGCTCAC GTGAGCC 26 5 8.0e-005 2.1e+000 # GGATCAC GTGATCC 15 3 3.6e-003 9.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 41 E= 2.8e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.365854 0.634146 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 85.39 seconds