# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF274.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF274.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF274.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF274.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:16:13 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF274.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:16:13 PST 2017) # host: indra # when: Mon Dec 18 16:30:28 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.282 C 0.222 G 0.219 T 0.278 MOTIF AGRAYTCA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGRAYTCA TGARTYCT 307 15 1.1e-093 2.9e-089 # AGAACTCA TGAGTTCT 151 4 1.7e-044 4.7e-040 # AGAATTCA TGAATTCT 107 3 1.2e-030 3.4e-026 # AGGACTCA TGAGTCCT 44 6 8.8e-009 2.4e-004 # AGGATTCA TGAATCCT 13 2 3.5e-003 9.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 353 E= 2.9e-089 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.821530 0.000000 0.178470 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.628895 0.000000 0.371105 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGTGGNAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TGTGGNAA TTNCCACA 251 16 1.1e-068 2.8e-064 # TGTGGGAA TTCCCACA 130 6 7.2e-035 1.9e-030 # TGTGGCAA TTGCCACA 54 2 6.9e-015 1.9e-010 # TGTGGAAA TTTCCACA 51 4 4.0e-012 1.1e-007 # TGTGGTAA TTACCACA 22 4 2.3e-004 6.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 262 E= 2.8e-064 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.198473 0.209924 0.507634 0.083969 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GARAARCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GARAARCC GGYTTYTC 237 12 2.6e-067 6.8e-063 # GAGAAACC GGTTTCTC 143 4 1.2e-041 3.1e-037 # GAGAAGCC GGCTTCTC 56 3 1.8e-014 4.7e-010 # GAAAAACC GGTTTTTC 31 2 4.6e-008 1.2e-003 # GAAAAGCC GGCTTTTC 18 3 6.8e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 258 E= 6.8e-063 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.193798 0.000000 0.806202 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.709302 0.000000 0.290698 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCCAGTR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TCCAGTR YACTGGA 154 17 4.8e-033 1.3e-028 # TCCAGTA TACTGGA 100 9 1.7e-022 4.4e-018 # TCCAGTG CACTGGA 57 8 5.6e-011 1.5e-006 letter-probability matrix: alength= 4 w= 7 nsites= 163 E= 1.3e-028 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.650307 0.000000 0.349693 0.000000 MOTIF ATRAATGY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ATRAATGY RCATTYAT 131 9 3.1e-032 8.2e-028 # ATGAATGT ACATTCAT 79 4 1.7e-020 4.3e-016 # ATAAATGT ACATTTAT 30 2 8.9e-008 2.3e-003 # ATGAATGC GCATTCAT 22 3 6.8e-005 1.8e+000 # ATAAATGC GCATTTAT 7 0 7.7e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 144 E= 8.2e-028 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.256944 0.000000 0.743056 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.201389 0.000000 0.798611 MOTIF AGCYTTY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGCYTTY RAARGCT 161 26 3.6e-029 9.3e-025 # AGCCTTT AAAGGCT 61 5 3.4e-014 8.7e-010 # AGCCTTC GAAGGCT 58 4 3.7e-014 9.5e-010 # AGCTTTT AAAAGCT 28 8 5.0e-004 1.3e+001 # AGCTTTC GAAAGCT 25 9 4.1e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 172 E= 9.3e-025 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.709302 0.000000 0.290698 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.476744 0.000000 0.523256 MOTIF ACATMAG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ACATMAG CTKATGT 98 20 4.7e-015 1.2e-010 # ACATCAG CTGATGT 63 12 2.7e-010 6.9e-006 # ACATAAG CTTATGT 37 8 5.4e-006 1.4e-001 letter-probability matrix: alength= 4 w= 7 nsites= 108 E= 1.2e-010 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.379630 0.620370 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CATTTGTA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CATTTGTA TACAAATG 45 3 3.1e-011 7.9e-007 # CATTTGTA TACAAATG 45 3 3.1e-011 7.9e-007 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 7.9e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTTAY DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CCTTAY RTAAGG 100 32 1.4e-010 3.6e-006 # CCTTAC GTAAGG 64 21 7.2e-007 1.8e-002 # CCTTAT ATAAGG 38 11 5.2e-005 1.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 109 E= 3.6e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.623853 0.000000 0.376147 MOTIF GAGAACHC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST GAGAACHC GDGTTCTC 41 6 5.3e-008 1.3e-003 # GAGAACTC GAGTTCTC 20 3 2.2e-004 5.5e+000 # GAGAACCC GGGTTCTC 13 2 3.5e-003 8.9e+001 # GAGAACAC GTGTTCTC 10 1 5.7e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.3e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.239130 0.326087 0.000000 0.434783 0.000000 1.000000 0.000000 0.000000 MOTIF GGCYTTTA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GGCYTTTA TAAARGCC 23 0 9.6e-008 2.4e-003 # GGCCTTTA TAAAGGCC 12 0 2.3e-004 5.8e+000 # GGCTTTTA TAAAAGCC 11 0 4.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.4e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.521739 0.000000 0.478261 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATACWGG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CATACWGG CCWGTATG 21 0 4.0e-007 1.0e-002 # CATACTGG CCAGTATG 12 0 2.3e-004 5.8e+000 # CATACAGG CCTGTATG 9 0 1.9e-003 4.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.0e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.000000 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 74.15 seconds