# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF266.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF266.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF266.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF266.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:14:58 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF266.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:14:58 PST 2017) # host: surya # when: Mon Dec 18 16:28:09 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.340 C 0.165 G 0.170 T 0.325 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 379 75 7.7e-078 2.0e-073 # TAAATAAA TTTATTTA 379 75 7.7e-078 2.0e-073 letter-probability matrix: alength= 4 w= 8 nsites= 1878 E= 2.0e-073 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCWCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TCWCA TGWGA 461 148 1.9e-076 4.9e-072 # TCTCA TGAGA 328 78 3.4e-055 8.7e-051 # TCACA TGTGA 194 88 2.7e-013 6.8e-009 letter-probability matrix: alength= 4 w= 5 nsites= 631 E= 4.9e-072 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.370840 0.000000 0.000000 0.629160 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCTGTY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTCTGTY RACAGAG 160 18 3.2e-034 7.8e-030 # CTCTGTC GACAGAG 112 7 5.7e-028 1.4e-023 # CTCTGTT AACAGAG 56 12 1.3e-008 3.2e-004 letter-probability matrix: alength= 4 w= 7 nsites= 177 E= 7.8e-030 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.677966 0.000000 0.322034 MOTIF ARACTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ARACTC GAGTYT 162 34 5.1e-025 1.2e-020 # AGACTC GAGTCT 104 10 6.4e-023 1.5e-018 # AAACTC GAGTTT 63 24 8.8e-006 2.1e-001 letter-probability matrix: alength= 4 w= 6 nsites= 170 E= 1.2e-020 1.000000 0.000000 0.000000 0.000000 0.382353 0.000000 0.617647 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGGGH DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTGGGH DCCCAG 181 62 3.3e-018 7.7e-014 # CTGGGC GCCCAG 75 18 2.2e-010 5.3e-006 # CTGGGA TCCCAG 57 19 3.9e-006 9.2e-002 # CTGGGT ACCCAG 56 30 2.4e-003 5.7e+001 letter-probability matrix: alength= 4 w= 6 nsites= 196 E= 7.7e-014 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.301020 0.408163 0.000000 0.290816 MOTIF CAGGGYC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAGGGYC GRCCCTG 41 5 1.3e-008 2.9e-004 # CAGGGTC GACCCTG 21 0 4.0e-007 9.2e-003 # CAGGGCC GGCCCTG 22 5 6.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 2.9e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.511628 0.000000 0.488372 0.000000 1.000000 0.000000 0.000000 MOTIF ACAAGAGY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ACAAGAGY RCTCTTGT 28 1 4.1e-008 9.4e-004 # ACAAGAGC GCTCTTGT 19 1 1.8e-005 4.0e-001 # ACAAGAGT ACTCTTGT 9 0 1.9e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 9.4e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.678571 0.000000 0.321429 MOTIF CWGCCTCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CWGCCTCC GGAGGCWG 26 1 1.6e-007 3.7e-003 # CTGCCTCC GGAGGCAG 16 0 1.4e-005 3.1e-001 # CAGCCTCC GGAGGCTG 10 1 5.7e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.7e-003 0.000000 1.000000 0.000000 0.000000 0.384615 0.000000 0.000000 0.615385 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTTCCCR DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GTTCCCR YGGGAAC 26 2 1.2e-006 2.7e-002 # GTTCCCA TGGGAAC 19 2 9.8e-005 2.2e+000 # GTTCCCG CGGGAAC 7 0 7.7e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 26 E= 2.7e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.730769 0.000000 0.269231 0.000000 MOTIF CWC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CWC GWG 551 497 1.7e-006 3.9e-002 # CAC GTG 430 358 7.7e-006 1.7e-001 # CTC GAG 468 413 2.0e-004 4.6e+000 letter-probability matrix: alength= 4 w= 3 nsites= 2025 E= 3.9e-002 0.000000 1.000000 0.000000 0.000000 0.501235 0.000000 0.000000 0.498765 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 40.69 seconds