# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:15:13 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF26.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:15:13 PST 2017) # host: kadru # when: Mon Dec 18 16:32:19 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.313 C 0.183 G 0.183 T 0.322 MOTIF CYAGRCA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CYAGRCA TGYCTRG 267 21 2.7e-070 7.1e-066 # CTAGACA TGTCTAG 137 7 3.6e-036 9.7e-032 # CCAGACA TGTCTGG 75 4 2.8e-019 7.6e-015 # CTAGGCA TGCCTAG 49 4 1.5e-011 4.0e-007 # CCAGGCA TGCCTGG 47 6 1.4e-009 3.8e-005 letter-probability matrix: alength= 4 w= 7 nsites= 329 E= 7.1e-066 0.000000 1.000000 0.000000 0.000000 0.000000 0.386018 0.000000 0.613982 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.702128 0.000000 0.297872 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAARATTA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AAARATTA TAATYTTT 159 16 2.0e-035 5.3e-031 # AAAAATTA TAATTTTT 141 14 3.2e-031 8.5e-027 # AAAGATTA TAATCTTT 19 2 9.8e-005 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 161 E= 5.3e-031 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.881988 0.000000 0.118012 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAATGHC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACAATGHC GDCATTGT 134 7 3.7e-035 9.6e-031 # ACAATGTC GACATTGT 93 3 4.9e-026 1.3e-021 # ACAATGAC GTCATTGT 31 3 2.8e-007 7.2e-003 # ACAATGCC GGCATTGT 12 1 1.6e-003 4.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 136 E= 9.6e-031 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.227941 0.088235 0.000000 0.683824 0.000000 1.000000 0.000000 0.000000 MOTIF GYCCAGCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GYCCAGCA TGCTGGRC 51 0 1.5e-016 3.8e-012 # GTCCAGCA TGCTGGAC 41 0 2.2e-013 5.8e-009 # GCCCAGCA TGCTGGGC 11 0 4.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 3.8e-012 0.000000 0.000000 1.000000 0.000000 0.000000 0.211538 0.000000 0.788462 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGAADAY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGGAADAY RTHTTCCT 86 7 6.4e-020 1.7e-015 # AGGAAAAT ATTTTCCT 31 2 4.6e-008 1.2e-003 # AGGAATAC GTATTCCT 14 1 4.6e-004 1.2e+001 # AGGAAAAC GTTTTCCT 17 3 1.2e-003 3.1e+001 # AGGAATAT ATATTCCT 9 0 1.9e-003 4.9e+001 # AGGAAGAC GTCTTCCT 8 0 3.8e-003 9.9e+001 # AGGAAGAT ATCTTCCT 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 1.7e-015 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.539326 0.000000 0.202247 0.258427 1.000000 0.000000 0.000000 0.000000 0.000000 0.438202 0.000000 0.561798 MOTIF ATYCAATC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATYCAATC GATTGRAT 52 5 1.2e-011 3.2e-007 # ATCCAATC GATTGGAT 29 1 2.1e-008 5.4e-004 # ATTCAATC GATTGAAT 23 4 1.3e-004 3.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 3.2e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.557692 0.000000 0.442308 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTTTBG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATTTTBG CVAAAAT 140 63 1.7e-009 4.4e-005 # ATTTTTG CAAAAAT 89 42 8.7e-006 2.2e-001 # ATTTTGG CCAAAAT 42 19 1.8e-003 4.5e+001 # ATTTTCG CGAAAAT 13 2 3.5e-003 9.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 151 E= 4.4e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.086093 0.291391 0.622517 0.000000 0.000000 1.000000 0.000000 MOTIF ATTTTAYC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATTTTAYC GRTAAAAT 32 3 1.5e-007 3.7e-003 # ATTTTACC GGTAAAAT 22 3 6.8e-005 1.7e+000 # ATTTTATC GATAAAAT 10 0 9.4e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.687500 0.000000 0.312500 0.000000 1.000000 0.000000 0.000000 MOTIF CYAGCAC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CYAGCAC GTGCTRG 41 8 6.2e-007 1.6e-002 # CTAGCAC GTGCTAG 15 1 2.4e-004 6.1e+000 # CCAGCAC GTGCTGG 26 7 5.7e-004 1.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 41 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.634146 0.000000 0.365854 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGCAGRAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGCAGRAA TTYCTGCT 28 3 1.8e-006 4.5e-002 # AGCAGGAA TTCCTGCT 13 1 8.7e-004 2.2e+001 # AGCAGAAA TTTCTGCT 15 2 1.1e-003 2.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.5e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.535714 0.000000 0.464286 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 106.39 seconds