# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 ACAATGTCYAGCAYMCA MEME-1 ACAATGTCYAGCAYMCA 2.0e-332 2.7e-335 -770.37 0.0 62 484 471 539 0.12810 1.1e-337 241 1 YTTTRYATGTCTRGTAATTTTT MEME-2 YTTTRYATGTCTRGTAATTTTT 7.4e-180 9.9e-183 -419.08 0.0 101 479 357 403 0.21086 4.2e-185 239 1 AGGAAKAHAAMAAAATCCAGAR MEME-3 AGGAAKAHAAMAAAATCCAGAR 9.8e-052 1.3e-054 -124.06 0.0 139 479 313 491 0.29019 5.5e-057 239 2 CYAGRCA DREME-1 CYAGACA 3.9e-092 5.3e-095 -217.09 0.0 94 494 252 362 0.19028 2.1e-097 246 2 AAARATTA DREME-2 AAAAATTA 3.2e-039 4.3e-042 -95.25 0.0 77 493 131 237 0.15619 1.8e-044 246 2 ACAATGHC DREME-3 ACAATGTC 7.5e-141 1.0e-143 -329.26 0.0 41 493 183 237 0.08316 4.1e-146 246 2 GYCCAGCA DREME-4 GTCCAGCA 2.0e-075 2.7e-078 -178.61 0.0 57 493 173 304 0.11562 1.1e-080 246 2 AGGAADAY DREME-5 AGGAAAAY 1.7e-009 2.3e-012 -26.81 0.0 165 493 120 199 0.33469 9.2e-015 246 2 ATYCAATC DREME-6 ATYCAATC 8.5e-030 1.1e-032 -73.55 0.0 59 493 53 68 0.11968 4.6e-035 246 2 ATTTTBG DREME-7 ATTTTTG 2.2e-057 3.0e-060 -137.07 0.0 74 494 179 326 0.14980 1.2e-062 246 2 ATTTTAYC DREME-8 ATTTTACC 5.0e-005 6.7e-008 -16.52 0.0 81 493 32 61 0.16430 2.7e-010 246 2 CYAGCAC DREME-9 CYAGCAC 5.5e-016 7.4e-019 -41.75 0.0 66 494 75 179 0.13360 3.0e-021 246 2 AGCAGRAA DREME-10 AGCAGRAA 4.6e-001 6.2e-004 -7.39 0.0 113 493 92 257 0.22921 2.5e-006 246 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 6.4e-008 8.6e-011 -23.18 0.0 66 492 136 544 0.13415 3.5e-013 245 3 M0108_1.02 (ARID5A)_(Mus_musculus)_(DBD_0.97) NDWAATATTKN 1.5e-002 2.0e-005 -10.81 0.0 132 490 201 537 0.26939 8.3e-008 244 3 M0413_1.02 (ZBTB1)_(Mus_musculus)_(DBD_0.99) NDTGCGKKDN 6.1e-012 8.2e-015 -32.44 0.0 41 491 104 513 0.08350 3.3e-017 245 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNH 4.6e-002 6.2e-005 -9.70 0.0 47 491 96 594 0.09572 2.5e-007 245 3 M0433_1.02 (ZBTB12)_(Mus_musculus)_(DBD_1.00) NYCTAGAACN 2.1e-006 2.9e-009 -19.67 0.0 35 491 90 586 0.07128 1.2e-011 245 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 5.9e-010 7.9e-013 -27.87 0.0 207 491 342 586 0.42159 3.2e-015 245 3 M0633_1.02 DMRT2 KAATKTATWN 8.4e-007 1.1e-009 -20.60 0.0 73 491 148 568 0.14868 4.6e-012 245 3 M0635_1.02 (DMRTC2)_(Mus_musculus)_(DBD_1.00) NAHATGTATHMWN 5.6e-001 7.5e-004 -7.20 0.0 48 488 92 577 0.09836 3.1e-006 243 3 M0718_1.02 FOXK1 DNRTMAACAH 6.4e-002 8.5e-005 -9.37 0.0 237 491 350 598 0.48269 3.5e-007 245 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 3.3e-003 4.5e-006 -12.32 0.0 211 489 321 588 0.43149 1.8e-008 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 7.4e-003 9.9e-006 -11.53 0.0 107 493 186 594 0.21704 4.0e-008 246 3 M0890_1.02 LHX6 NYAATCAN 1.2e-007 1.6e-010 -22.54 0.0 169 493 283 582 0.34280 6.6e-013 246 3 M0901_1.02 AC226150.2 CWTGTCAA 3.2e-003 4.3e-006 -12.35 0.0 103 493 180 587 0.20892 1.8e-008 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 3.0e-001 4.0e-004 -7.81 0.0 424 492 509 549 0.86179 1.7e-006 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 2.9e-001 3.8e-004 -7.87 0.0 186 492 276 583 0.37805 1.6e-006 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 2.1e0000 2.9e-003 -5.86 0.0 42 492 78 556 0.08537 1.2e-005 245 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 5.2e0000 6.9e-003 -4.97 0.0 432 492 456 488 0.87805 2.8e-005 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 3.8e-002 5.2e-005 -9.87 0.0 42 492 80 518 0.08537 2.1e-007 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 2.5e-001 3.3e-004 -8.00 0.0 64 490 106 515 0.13061 1.4e-006 244 3 M1583_1.02 (BBX)_(Mus_musculus)_(DBD_0.99) TTCATTGA 5.8e0000 7.7e-003 -4.87 0.0 181 493 152 317 0.36714 3.1e-005 246 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 3.2e-015 4.2e-018 -40.00 0.0 71 491 174 596 0.14460 1.7e-020 245 3 M1592_1.02 (SOX3)_(Mus_musculus)_(DBD_1.00) NNNWCAAT 6.1e-020 8.1e-023 -50.87 0.0 53 493 111 357 0.10751 3.3e-025 246 3 M1594_1.02 (SOX12)_(Mus_musculus)_(DBD_1.00) HWTTGTYNNN 1.7e-022 2.3e-025 -56.74 0.0 175 491 344 598 0.35642 9.3e-028 245 3 M1601_1.02 (SOX11)_(Mus_musculus)_(DBD_1.00) WTTGTBNNN 2.3e-015 3.1e-018 -40.33 0.0 184 492 335 596 0.37398 1.3e-020 245 3 M1915_1.02 (ZNF76)_(Xenopus_laevis)_(DBD_0.84) KCRWKGMATBMTGGGARDTV 4.6e-003 6.1e-006 -12.01 0.0 27 481 59 483 0.05613 2.5e-008 240 3 M2267_1.02 CDX2 TTTTATKRCHB 1.8e-001 2.4e-004 -8.32 0.0 104 490 163 544 0.21224 1.0e-006 244 3 M2270_1.02 DUX4 TAAYYYAATCA 2.8e-003 3.7e-006 -12.51 0.0 276 490 352 515 0.56327 1.5e-008 244 3 M2278_1.02 FOS DVTGASTCATB 1.2e0000 1.6e-003 -6.44 0.0 280 490 348 522 0.57143 6.5e-006 244 3 M2281_1.02 FOXH1 BNSAATCCACA 1.3e-010 1.7e-013 -29.41 0.0 82 490 172 563 0.16735 7.0e-016 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 4.5e-002 6.0e-005 -9.72 0.0 198 486 295 576 0.40741 2.5e-007 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.0e0000 2.7e-003 -5.90 0.0 182 488 243 523 0.37295 1.1e-005 243 3 M2306_1.02 POU2F2 HDNATTTGCATRW 3.3e-002 4.5e-005 -10.02 0.0 138 488 202 522 0.28279 1.8e-007 243 3 M2313_1.02 (SOX6)_(Mus_musculus)_(DBD_1.00) CCWTTGTYYY 1.7e-007 2.3e-010 -22.19 0.0 245 491 379 588 0.49898 9.4e-013 245 3 M4344_1.02 (ARID2)_(Saccharomyces_cerevisiae)_(DBD_0.26) BGTTGCYA 8.1e-001 1.1e-003 -6.83 0.0 13 493 34 549 0.02637 4.4e-006 246 3 M4452_1.02 BATF TYYYRWWATGASTCA 7.6e-001 1.0e-003 -6.88 0.0 214 486 305 571 0.44033 4.2e-006 242 3 M4461_1.02 ETS1 GCMTBCTGGGARWTGTAGTYY 4.3e-001 5.8e-004 -7.45 0.0 58 480 57 253 0.12083 2.4e-006 239 3 M4473_1.02 PBX3 NBCDGCCAATSRGVR 1.5e-002 2.0e-005 -10.82 0.0 38 486 81 556 0.07819 8.3e-008 242 3 M4708_1.02 TBP TATGCAAATA 4.1e-001 5.4e-004 -7.52 0.0 109 491 174 569 0.22200 2.2e-006 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 1.3e0000 1.7e-003 -6.36 0.0 276 488 337 510 0.56557 7.1e-006 243 3 M5339_1.02 DLX1 NNTAATTRNN 1.3e-002 1.7e-005 -10.97 0.0 73 491 132 563 0.14868 7.0e-008 245 3 M5342_1.02 DLX4 NTAATTRN 5.6e0000 7.5e-003 -4.90 0.0 381 493 489 581 0.77282 3.1e-005 246 3 M5343_1.02 DLX5 NTAATTRN 9.3e-004 1.2e-006 -13.60 0.0 79 493 147 576 0.16024 5.0e-009 246 3 M5344_1.02 DLX6 NTAATTRN 3.1e-002 4.2e-005 -10.09 0.0 39 493 82 573 0.07911 1.7e-007 246 3 M5349_1.02 DUXA NTRAYYTAATCAN 9.3e-002 1.2e-004 -8.99 0.0 274 488 352 528 0.56148 5.1e-007 243 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 2.9e-001 3.9e-004 -7.84 0.0 255 487 274 430 0.52361 1.6e-006 243 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 1.7e-004 2.3e-007 -15.28 0.0 113 487 185 532 0.23203 9.5e-010 243 3 M5512_1.02 HIC2 VSYGGGCAY 3.6e-003 4.8e-006 -12.24 0.0 26 492 65 585 0.05285 2.0e-008 245 3 M5518_1.02 HMX1 NDTTAATTGNT 4.4e0000 5.8e-003 -5.14 0.0 198 490 278 567 0.40408 2.4e-005 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 3.8e0000 5.1e-003 -5.28 0.0 300 490 401 577 0.61224 2.1e-005 244 3 M5551_1.02 HOXC12 TTTTATTRC 2.5e-002 3.4e-005 -10.29 0.0 106 492 176 571 0.21545 1.4e-007 245 3 M5553_1.02 HOXC13 CYAATAAAAH 1.2e-002 1.7e-005 -11.01 0.0 73 491 131 560 0.14868 6.8e-008 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 3.5e-002 4.8e-005 -9.95 0.0 75 491 117 483 0.15275 1.9e-007 245 3 M5557_1.02 HOXD12 GTAATAAAA 7.7e0000 1.0e-002 -4.58 0.0 106 492 161 560 0.21545 4.2e-005 245 3 M5581_1.02 IRX2 CWTGTCRTGTWN 1.4e-011 1.8e-014 -31.63 0.0 121 489 236 584 0.24744 7.5e-017 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 8.5e-010 1.1e-012 -27.50 0.0 117 489 226 590 0.23926 4.7e-015 244 3 M5587_1.02 JDP2 ATGASTCAT 5.3e-001 7.1e-004 -7.25 0.0 242 492 275 460 0.49187 2.9e-006 245 3 M5621_1.02 MEIS3 SCTGTCAH 5.2e-001 7.0e-004 -7.27 0.0 57 493 106 588 0.11562 2.8e-006 246 3 M5623_1.02 MEOX1 VSTAATTAHC 1.0e0000 1.4e-003 -6.60 0.0 423 491 495 536 0.86151 5.5e-006 245 3 M5624_1.02 MEOX2 DSTAATTAWN 2.0e-001 2.7e-004 -8.20 0.0 39 491 80 574 0.07943 1.1e-006 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 2.1e-001 2.9e-004 -8.15 0.0 65 483 88 395 0.13458 1.2e-006 241 3 M5660_1.02 NFIA TTGGCANNDTGCCAR 8.7e-010 1.2e-012 -27.47 0.0 48 486 77 301 0.09877 4.8e-015 242 3 M5662_1.02 NFIB TTGGCAHNDTGCCAR 1.3e-009 1.7e-012 -27.09 0.0 48 486 78 309 0.09877 7.1e-015 242 3 M5664_1.02 NFIX TTGGCANNNHGCCAR 1.9e-006 2.5e-009 -19.81 0.0 48 486 93 453 0.09877 1.0e-011 242 3 M5697_1.02 ONECUT3 DTTATYGATTTTTT 4.2e-015 5.7e-018 -39.71 0.0 177 487 280 493 0.36345 2.3e-020 243 3 M5714_1.02 PHOX2A TAATYYAATTA 1.1e0000 1.5e-003 -6.51 0.0 278 490 329 495 0.56735 6.1e-006 244 3 M5715_1.02 PHOX2B TAATYYAATTA 4.5e-002 6.0e-005 -9.73 0.0 278 490 339 499 0.56735 2.4e-007 244 3 M5740_1.02 POU4F1 ATGMATAATTAATG 4.8e-001 6.4e-004 -7.35 0.0 39 487 70 496 0.08008 2.6e-006 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 1.5e-004 2.0e-007 -15.43 0.0 71 485 125 497 0.14639 8.3e-010 242 3 M5835_1.02 SOX7 AACAATRWNCAKTGTT 1.3e-004 1.8e-007 -15.54 0.0 101 485 85 218 0.20825 7.4e-010 242 3 M5838_1.02 SOX8 AACAATRTGCAGTGTT 3.5e-006 4.7e-009 -19.18 0.0 101 485 59 123 0.20825 1.9e-011 242 3 M5941_1.02 UNCX NTAATYBAATTAN 7.6e-001 1.0e-003 -6.89 0.0 276 488 359 543 0.56557 4.2e-006 243 3 M5972_1.02 ZNF410 GANTATTATGGGATGKM 1.2e-001 1.7e-004 -8.71 0.0 156 484 82 161 0.32231 6.9e-007 241 3 M5981_1.02 ZSCAN4 TTTTCAGTGTGTGCA 1.2e-012 1.6e-015 -34.10 0.0 62 486 106 350 0.12757 6.4e-018 242 3 M6037_1.02 (IRX1)_(Mus_musculus)_(DBD_1.00) TTTKTCATGTWR 6.0e-005 8.0e-008 -16.34 0.0 101 489 177 553 0.20654 3.3e-010 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 3.4e0000 4.5e-003 -5.40 0.0 183 491 269 589 0.37271 1.9e-005 245 3 M6139_1.02 AHR KCACGCRAH 1.9e-011 2.5e-014 -31.33 0.0 66 492 141 519 0.13415 1.0e-016 245 3 M6140_1.02 AIRE HTTGGWWWWWWTGGDTWH 7.6e0000 1.0e-002 -4.58 0.0 35 483 70 591 0.07246 4.3e-005 241 3 M6141_1.02 ALX1 TAATBYAATTAY 1.5e0000 2.0e-003 -6.24 0.0 305 489 383 537 0.62372 8.0e-006 244 3 M6149_1.02 ARID5B DBYKDGTATTSKR 1.7e-012 2.3e-015 -33.69 0.0 104 488 216 589 0.21311 9.6e-018 243 3 M6151_1.02 ARNT BYRCGTGC 3.7e-006 4.9e-009 -19.13 0.0 59 493 105 454 0.11968 2.0e-011 246 3 M6163_1.02 BPTF KKTBTTGTKKKS 9.1e-008 1.2e-010 -22.82 0.0 137 489 248 594 0.28016 5.0e-013 244 3 M6166_1.02 CDC5L RWTAYRTTAAMWCVC 6.5e0000 8.8e-003 -4.74 0.0 356 486 418 517 0.73251 3.6e-005 242 3 M6174_1.02 CEBPZ AGCCAATSAGH 1.0e0000 1.3e-003 -6.61 0.0 178 490 218 471 0.36327 5.5e-006 244 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 7.2e-002 9.7e-005 -9.24 0.0 182 488 281 594 0.37295 4.0e-007 243 3 M6237_1.02 FOXD3 AAACAAACA 4.9e-007 6.6e-010 -21.14 0.0 186 492 302 581 0.37805 2.7e-012 245 3 M6238_1.02 FOXF1 WAAATAAACAW 7.7e-003 1.0e-005 -11.48 0.0 182 490 276 572 0.37143 4.2e-008 244 3 M6239_1.02 FOXF2 HWADGTAAACA 3.3e-001 4.4e-004 -7.74 0.0 132 490 205 572 0.26939 1.8e-006 244 3 M6240_1.02 FOXI1 RRCCAATCAVAR 2.7e-005 3.6e-008 -17.14 0.0 193 489 249 459 0.39468 1.5e-010 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 3.5e-004 4.6e-007 -14.59 0.0 145 491 241 588 0.29532 1.9e-009 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 1.3e0000 1.7e-003 -6.35 0.0 132 488 196 551 0.27049 7.2e-006 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 3.2e-006 4.3e-009 -19.27 0.0 200 488 327 600 0.40984 1.8e-011 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 2.9e-001 3.9e-004 -7.84 0.0 215 485 315 583 0.44330 1.6e-006 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 1.3e-003 1.8e-006 -13.25 0.0 224 488 339 588 0.45902 7.3e-009 243 3 M6247_1.02 FOXO4 MRTAAACAA 7.0e-008 9.5e-011 -23.08 0.0 180 492 302 590 0.36585 3.9e-013 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 4.8e-008 6.4e-011 -23.47 0.0 77 489 144 504 0.15746 2.6e-013 244 3 M6251_1.02 FUBP1 TYGTNTTTTTTT 1.3e-016 1.7e-019 -43.22 0.0 147 489 288 587 0.30061 7.0e-022 244 3 M6256_1.02 GATA4 RSWGATAAV 5.5e0000 7.3e-003 -4.92 0.0 184 492 270 592 0.37398 3.0e-005 245 3 M6268_1.02 HAND1 AAWDCCAGAYVC 1.2e-007 1.7e-010 -22.52 0.0 69 489 149 590 0.14110 6.8e-013 244 3 M6269_1.02 HBP1 AYYCATTGA 6.5e-002 8.7e-005 -9.36 0.0 192 492 280 566 0.39024 3.5e-007 245 3 M6279_1.02 HMGA1 AAAATWN 1.1e0000 1.5e-003 -6.51 0.0 92 494 153 587 0.18623 6.1e-006 246 3 M6282_1.02 HNF1B GTTAAWYATTAACY 7.7e-001 1.0e-003 -6.88 0.0 137 487 200 538 0.28131 4.2e-006 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 5.5e-013 7.4e-016 -34.84 0.0 223 487 339 524 0.45791 3.0e-018 243 3 M6289_1.02 HOXA9 WCATAAAYYATH 8.8e-005 1.2e-007 -15.95 0.0 75 489 141 551 0.15337 4.9e-010 244 3 M6291_1.02 HOXA1 CATCCATCMA 8.5e-001 1.1e-003 -6.78 0.0 57 491 95 516 0.11609 4.7e-006 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 2.8e0000 3.8e-003 -5.58 0.0 192 488 203 409 0.39344 1.6e-005 243 3 M6297_1.02 HOXB7 MATYAATCAA 1.4e-006 1.9e-009 -20.07 0.0 191 491 251 460 0.38900 7.8e-012 245 3 M6298_1.02 HOXB8 BMATTAATCAA 1.8e-007 2.4e-010 -22.14 0.0 180 490 233 435 0.36735 1.0e-012 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 2.8e-005 3.7e-008 -17.10 0.0 198 486 207 361 0.40741 1.5e-010 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 1.6e-002 2.2e-005 -10.72 0.0 185 487 271 552 0.37988 9.1e-008 243 3 M6301_1.02 HOXD10 AATTAAARCA 5.9e0000 7.9e-003 -4.84 0.0 387 491 493 577 0.78819 3.3e-005 245 3 M6303_1.02 HOXD4 TTAATTKW 6.6e-008 8.9e-011 -23.15 0.0 81 493 166 585 0.16430 3.6e-013 246 3 M6327_1.02 LEF1 CTTTGWW 3.1e-001 4.1e-004 -7.80 0.0 316 494 434 595 0.63968 1.7e-006 246 3 M6333_1.02 MAFG HATGACT 1.3e-002 1.7e-005 -10.96 0.0 228 494 330 577 0.46154 7.1e-008 246 3 M6347_1.02 MSX2 TAATTNK 6.4e-017 8.5e-020 -43.91 0.0 78 494 185 578 0.15789 3.5e-022 246 3 M6357_1.02 NANOG KTTAATGG 5.2e-002 7.0e-005 -9.57 0.0 87 493 149 571 0.17647 2.9e-007 246 3 M6359_1.02 NFE2L1 NATGACD 4.8e-004 6.4e-007 -14.26 0.0 234 494 351 590 0.47368 2.6e-009 246 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 4.5e0000 6.0e-003 -5.11 0.0 195 487 185 365 0.40041 2.5e-005 243 3 M6391_1.02 NR2E3 TGACTTTTGACTTT 2.0e-004 2.7e-007 -15.13 0.0 147 487 247 588 0.30185 1.1e-009 243 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 2.1e-004 2.8e-007 -15.08 0.0 218 480 278 468 0.45417 1.2e-009 239 3 M6412_1.02 PBX1 VHMATCAATCAAWTH 2.0e-001 2.6e-004 -8.24 0.0 200 486 293 574 0.41152 1.1e-006 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 2.2e0000 2.9e-003 -5.84 0.0 306 486 413 578 0.62963 1.2e-005 242 3 M6423_1.02 POU2F1 ATTTGCATD 3.5e-001 4.6e-004 -7.67 0.0 92 492 157 592 0.18699 1.9e-006 245 3 M6426_1.02 POU3F2 CATRAATWWT 3.1e0000 4.2e-003 -5.47 0.0 87 491 142 573 0.17719 1.7e-005 245 3 M6465_1.02 SMAD3 STGTCTGBCY 6.9e-002 9.3e-005 -9.28 0.0 83 491 148 593 0.16904 3.8e-007 245 3 M6466_1.02 SMAD4 TGTCTGBCY 1.8e-017 2.4e-020 -45.18 0.0 76 492 188 596 0.15447 9.8e-023 245 3 M6470_1.02 SOX10 BCWTTGT 4.1e-011 5.6e-014 -30.52 0.0 42 494 115 597 0.08502 2.3e-016 246 3 M6471_1.02 SOX13 YATTGTTY 2.6e-040 3.5e-043 -97.75 0.0 55 493 195 591 0.11156 1.4e-045 246 3 M6472_1.02 SOX15 CWTTGTT 2.7e-039 3.6e-042 -95.44 0.0 46 494 176 594 0.09312 1.5e-044 246 3 M6473_1.02 SOX17 CAAMAATNHHCATTGTCS 9.6e-012 1.3e-014 -31.98 0.0 57 483 103 370 0.11801 5.3e-017 241 3 M6474_1.02 SOX18 GGAMRAVAACAAWKBDWDS 7.7e-003 1.0e-005 -11.48 0.0 224 482 324 560 0.46473 4.3e-008 240 3 M6477_1.02 SOX5 WAACAATR 1.2e-018 1.7e-021 -47.85 0.0 43 493 132 590 0.08722 6.7e-024 246 3 M6478_1.02 SOX9 ARAACAATRGR 2.9e-007 4.0e-010 -21.65 0.0 40 490 98 570 0.08163 1.6e-012 244 3 M6490_1.02 SRY DAAACAAWR 1.2e-004 1.7e-007 -15.60 0.0 190 492 302 593 0.38618 6.8e-010 245 3 M6508_1.02 TEAD3 GAHATTYYWGCYBYW 1.2e0000 1.6e-003 -6.45 0.0 112 486 182 588 0.23045 6.5e-006 242 3 M6546_1.02 ZFHX3 ATTAWTAATTA 8.4e0000 1.1e-002 -4.49 0.0 168 490 198 457 0.34286 4.6e-005 244 3 M6555_1.02 ZNF333 BKATAATGA 5.4e-001 7.2e-004 -7.24 0.0 80 492 124 514 0.16260 2.9e-006 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).