# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF248.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF248.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF248.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF248.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:14:43 PST 2017) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF248.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:14:43 PST 2017) # host: indra # when: Mon Dec 18 16:30:16 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.290 C 0.200 G 0.209 T 0.301 MOTIF TTCATGRA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TTCATGRA TYCATGAA 212 5 5.8e-066 1.5e-061 # TTCATGGA TCCATGAA 198 5 1.6e-060 4.2e-056 # TTCATGAA TTCATGAA 14 0 5.7e-005 1.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 215 E= 1.5e-061 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.065116 0.000000 0.934884 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATHCCATG DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATHCCATG CATGGDAT 162 11 1.0e-040 2.7e-036 # ATACCATG CATGGTAT 71 1 1.8e-021 4.7e-017 # ATCCCATG CATGGGAT 64 5 4.5e-015 1.2e-010 # ATTCCATG CATGGAAT 27 5 4.6e-005 1.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 162 E= 2.7e-036 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.438272 0.395062 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TCTTYCMA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCTTYCMA TKGRAAGA 108 7 1.1e-026 2.7e-022 # TCTTCCAA TTGGAAGA 48 0 1.3e-015 3.5e-011 # TCTTTCCA TGGAAAGA 53 3 1.4e-013 3.6e-009 # TCTTCCCA TGGGAAGA 16 2 6.1e-004 1.6e+001 # TCTTTCAA TTGAAAGA 12 2 6.2e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 129 E= 2.7e-022 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.496124 0.000000 0.503876 0.000000 1.000000 0.000000 0.000000 0.465116 0.534884 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ARTATTG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ARTATTG CAATAYT 112 16 4.4e-021 1.1e-016 # AATATTG CAATATT 92 11 1.1e-018 3.0e-014 # AGTATTG CAATACT 25 5 1.4e-004 3.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 117 E= 1.1e-016 1.000000 0.000000 0.000000 0.000000 0.786325 0.000000 0.213675 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAAKAAAT DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAAKAAAT ATTTMTTT 79 17 8.8e-012 2.3e-007 # AAATAAAT ATTTATTT 43 8 2.0e-007 5.2e-003 # AAAGAAAT ATTTCTTT 41 9 1.8e-006 4.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 2.3e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.471264 0.528736 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CTACARA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTACARA TYTGTAG 69 14 8.9e-011 2.3e-006 # CTACAGA TCTGTAG 34 5 8.5e-007 2.2e-002 # CTACAAA TTTGTAG 35 9 4.0e-005 1.0e+000 letter-probability matrix: alength= 4 w= 7 nsites= 69 E= 2.3e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.507246 0.000000 0.492754 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATYTTAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CATYTTAA TTAARATG 56 10 1.4e-009 3.5e-005 # CATCTTAA TTAAGATG 28 4 7.6e-006 1.9e-001 # CATTTTAA TTAAAATG 28 6 8.0e-005 2.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 3.5e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTCTTCY DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GTCTTCY RGAAGAC 61 19 6.2e-007 1.6e-002 # GTCTTCC GGAAGAC 26 5 8.0e-005 2.0e+000 # GTCTTCT AGAAGAC 36 15 1.9e-003 4.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 64 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.421875 0.000000 0.578125 # Stopping reason: E-value threshold exceeded # Running time: 50.37 seconds