# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF24.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF24.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF24.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF24.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:07:54 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF24.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:07:54 PDT 2018) # host: indra # when: Thu May 10 17:55:23 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.264 C 0.238 G 0.240 T 0.259 MOTIF AYTCATTC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AYTCATTC GAATGART 177 13 5.1e-044 1.7e-039 # ATTCATTC GAATGAAT 160 10 5.6e-041 1.9e-036 # ACTCATTC GAATGAGT 53 3 1.4e-013 4.6e-009 letter-probability matrix: alength= 4 w= 8 nsites= 395 E= 1.7e-039 1.000000 0.000000 0.000000 0.000000 0.000000 0.255696 0.000000 0.744304 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGACTCAB DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 65 7 8.0e-014 2.6e-009 # TGACTCAC GTGAGTCA 25 0 2.3e-008 7.5e-004 # TGACTCAG CTGAGTCA 19 2 9.8e-005 3.2e+000 # TGACTCAT ATGAGTCA 25 5 1.4e-004 4.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 2.6e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.356164 0.301370 0.342466 MOTIF MRTAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST MRTAAA TTTAYK 176 74 1.9e-013 6.2e-009 # CATAAA TTTATG 65 23 1.9e-006 6.2e-002 # AATAAA TTTATT 76 37 7.6e-005 2.5e+000 # AGTAAA TTTACT 48 18 9.7e-005 3.1e+000 # CGTAAA TTTACG 13 2 3.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 223 E= 6.2e-009 0.587444 0.412556 0.000000 0.000000 0.713004 0.000000 0.286996 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAYGTGAC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAYGTGAC GTCACRTG 41 4 2.6e-009 8.3e-005 # CACGTGAC GTCACGTG 26 1 1.6e-007 5.1e-003 # CATGTGAC GTCACATG 17 3 1.2e-003 3.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 8.3e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.648148 0.000000 0.351852 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTCSTTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ATTCSTTC GAASGAAT 28 1 4.1e-008 1.3e-003 # ATTCCTTC GAAGGAAT 17 1 6.5e-005 2.1e+000 # ATTCGTTC GAACGAAT 13 0 1.1e-004 3.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.3e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.580645 0.419355 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AYTCACTC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AYTCACTC GAGTGART 39 6 1.7e-007 5.4e-003 # ATTCACTC GAGTGAAT 23 2 8.1e-006 2.6e-001 # ACTCACTC GAGTGAGT 21 5 1.1e-003 3.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 5.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.524590 0.000000 0.475410 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AACAART DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AACAART AYTTGTT 46 11 9.8e-007 3.1e-002 # AACAAAT ATTTGTT 31 7 4.6e-005 1.4e+000 # AACAAGT ACTTGTT 16 4 5.6e-003 1.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 57 E= 3.1e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.719298 0.000000 0.280702 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: E-value threshold exceeded # Running time: 33.72 seconds