# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 GAATGAATGAATGAATGAATGA MEME-1 GAATGAATGAATGAATGAATGA 9.9e-050 1.3e-052 -119.46 0.0 111 479 173 247 0.23173 5.5e-055 239 1 TGAATGAATGARTGAA MEME-2 TGAATGAATGARTGAA 1.7e-049 2.2e-052 -118.94 0.0 103 485 174 264 0.21237 9.1e-055 242 1 CAYTCATTCAYT MEME-3 CAYTCATTCAYT 2.1e-045 2.8e-048 -109.49 0.0 93 489 179 311 0.19018 1.2e-050 244 1 TGAABRARTGAW MEME-4 TGAABRARTGAW 9.3e-047 1.2e-049 -112.61 0.0 89 489 242 507 0.18200 5.1e-052 244 1 CHGGCACAYAGTAGGYGCTCARTAAATR MEME-5 CHGGCACAYAGTAGGYGCTCARTAAATR 2.7e-002 3.6e-005 -10.24 0.0 169 473 34 46 0.35729 1.5e-007 236 1 TGAGTCA MEME-8 TGAGTCA 6.4e-007 8.5e-010 -20.89 0.0 264 494 132 167 0.53441 3.4e-012 246 1 GTCACGTGACVSRSSM MEME-9 GTCACGTGACVSRSSM 8.3e-001 1.1e-003 -6.81 0.0 227 485 96 146 0.46804 4.6e-006 242 2 AYTCATTC DREME-1 ATTCATTC 4.8e-050 6.4e-053 -120.18 0.0 109 493 156 216 0.22110 2.6e-055 246 2 TGACTCAB DREME-2 TGACTCAB 3.7e-007 4.9e-010 -21.43 0.0 265 493 126 157 0.53753 2.0e-012 246 2 CAYGTGAC DREME-4 CAYGTGAC 2.4e-004 3.2e-007 -14.95 0.0 185 493 49 65 0.37525 1.3e-009 246 2 ATTCSTTC DREME-5 ATTCSTTC 8.9e-048 1.2e-050 -114.95 0.0 89 493 145 224 0.18053 4.8e-053 246 2 AYTCACTC DREME-6 AYTCACTC 2.2e-006 2.9e-009 -19.65 0.0 77 493 43 96 0.15619 1.2e-011 246 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 2.1e-005 2.8e-008 -17.39 0.0 205 491 307 555 0.41752 1.1e-010 245 3 M0395_1.02 (ZNF187)_(Mus_musculus)_(DBD_0.88) GTACTAAT 6.9e-008 9.3e-011 -23.10 0.0 103 493 192 564 0.20892 3.8e-013 246 3 M0633_1.02 DMRT2 KAATKTATWN 6.0e0000 8.1e-003 -4.82 0.0 111 491 159 525 0.22607 3.3e-005 245 3 M0719_1.02 FOXG1 RTAAACAW 6.2e0000 8.3e-003 -4.79 0.0 225 493 264 482 0.45639 3.4e-005 246 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 5.0e0000 6.7e-003 -5.01 0.0 229 491 311 563 0.46640 2.7e-005 245 3 M0892_1.02 EMX1 NYTAATKAVN 1.4e-001 1.8e-004 -8.62 0.0 195 491 265 528 0.39715 7.4e-007 245 3 M0893_1.02 ZFHX2 NNTAATTANN 4.7e-002 6.3e-005 -9.67 0.0 103 491 148 481 0.20978 2.6e-007 245 3 M0894_1.02 LBX1 TTAATTAG 5.3e0000 7.0e-003 -4.96 0.0 199 493 242 489 0.40365 2.9e-005 246 3 M0896_1.02 VENTX TTAATTAG 4.8e-005 6.3e-008 -16.57 0.0 101 493 160 493 0.20487 2.6e-010 246 3 M0900_1.02 SHOX HTAATTRV 4.0e0000 5.4e-003 -5.23 0.0 101 493 145 517 0.20487 2.2e-005 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 2.8e-002 3.7e-005 -10.21 0.0 106 492 157 499 0.21545 1.5e-007 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 3.5e-001 4.6e-004 -7.68 0.0 103 491 130 426 0.20978 1.9e-006 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.5e0000 2.0e-003 -6.21 0.0 101 493 143 499 0.20487 8.2e-006 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 3.5e-001 4.6e-004 -7.68 0.0 128 494 171 480 0.25911 1.9e-006 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 4.7e-001 6.3e-004 -7.37 0.0 88 492 142 551 0.17886 2.6e-006 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 1.5e0000 1.9e-003 -6.24 0.0 104 492 151 514 0.21138 7.9e-006 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 4.3e-001 5.8e-004 -7.46 0.0 110 492 165 533 0.22358 2.3e-006 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYKDBN 3.5e0000 4.6e-003 -5.38 0.0 174 492 114 234 0.35366 1.9e-005 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.2e-001 1.6e-004 -8.76 0.0 108 492 160 511 0.21951 6.4e-007 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 2.4e-001 3.2e-004 -8.04 0.0 227 493 250 435 0.46045 1.3e-006 246 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 9.6e-001 1.3e-003 -6.66 0.0 108 492 153 500 0.21951 5.2e-006 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 9.4e0000 1.3e-002 -4.38 0.0 101 493 142 512 0.20487 5.1e-005 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 3.0e0000 3.9e-003 -5.54 0.0 100 492 150 538 0.20325 1.6e-005 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 7.1e-001 9.5e-004 -6.96 0.0 110 492 162 523 0.22358 3.9e-006 245 3 M1581_1.02 (CIC)_(Mus_musculus)_(DBD_1.00) NNTGCTGACW 5.4e-001 7.2e-004 -7.23 0.0 217 491 307 571 0.44196 3.0e-006 245 3 M1583_1.02 (BBX)_(Mus_musculus)_(DBD_0.99) TTCATTGA 2.0e-017 2.7e-020 -45.07 0.0 105 493 224 568 0.21298 1.1e-022 246 3 M1605_1.02 (SOX1)_(Mus_musculus)_(DBD_1.00) ATTSWHNNNN 5.2e-020 6.9e-023 -51.02 0.0 93 491 215 575 0.18941 2.8e-025 245 3 M1863_1.02 FOXD1 GTAAACAW 2.9e0000 3.9e-003 -5.54 0.0 225 493 265 479 0.45639 1.6e-005 246 3 M2270_1.02 DUX4 TAAYYYAATCA 1.5e-008 2.1e-011 -24.61 0.0 44 490 99 501 0.08980 8.4e-014 244 3 M2278_1.02 FOS DVTGASTCATB 4.9e-009 6.5e-012 -25.76 0.0 122 490 201 498 0.24898 2.7e-014 244 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.8e0000 3.7e-003 -5.60 0.0 164 488 204 476 0.33607 1.5e-005 243 3 M2289_1.02 JUN DDRATGATGTMAT 1.2e-003 1.7e-006 -13.31 0.0 188 488 250 487 0.38525 6.8e-009 243 3 M2292_1.02 JUND DRTGASTCATS 3.9e-008 5.2e-011 -23.68 0.0 202 490 279 483 0.41224 2.1e-013 244 3 M2301_1.02 NFYB VHMYBRRCCAATCAG 6.5e-005 8.7e-008 -16.26 0.0 124 486 186 484 0.25514 3.6e-010 242 3 M4452_1.02 BATF TYYYRWWATGASTCA 2.2e-010 3.0e-013 -28.85 0.0 162 486 266 531 0.33333 1.2e-015 242 3 M4463_1.02 IRF4 DNWSNRGAAVTGAVWSWD 5.6e-009 7.4e-012 -25.63 0.0 91 483 188 590 0.18841 3.1e-014 241 3 M4526_1.02 SMARCC1 DSRVDGTGASTCABV 5.6e-005 7.5e-008 -16.41 0.0 268 486 349 508 0.55144 3.1e-010 242 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 2.0e-007 2.7e-010 -22.04 0.0 125 487 194 479 0.25667 1.1e-012 243 3 M4619_1.02 FOSL1 BGGTGASTCAK 2.0e-006 2.7e-009 -19.74 0.0 264 490 316 455 0.53878 1.1e-011 244 3 M4623_1.02 JUNB NDRTGASTCATNYHY 7.4e-005 9.8e-008 -16.14 0.0 260 486 322 477 0.53498 4.1e-010 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 5.1e-002 6.8e-005 -9.59 0.0 174 484 205 429 0.35950 2.8e-007 241 3 M4681_1.02 BACH2 TGCTGAGTCA 2.0e0000 2.7e-003 -5.92 0.0 271 491 294 452 0.55193 1.1e-005 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 5.4e-001 7.2e-004 -7.24 0.0 120 488 163 482 0.24590 3.0e-006 243 3 M5291_1.02 ARX YTAATTNRATTAN 3.8e-002 5.1e-005 -9.89 0.0 108 488 152 470 0.22131 2.1e-007 243 3 M5292_1.02 ATF4 GKATGAYGCAATM 1.9e-006 2.5e-009 -19.82 0.0 148 488 201 439 0.30328 1.0e-011 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 8.1e-003 1.1e-005 -11.43 0.0 209 487 169 287 0.42916 4.5e-008 243 3 M5302_1.02 BATF3 TGATGACGTCATCA 2.4e-004 3.2e-007 -14.94 0.0 193 487 89 136 0.39630 1.3e-009 243 3 M5323_1.02 CREB3 KGRTGACGTCAYNV 3.6e-001 4.8e-004 -7.64 0.0 209 487 165 292 0.42916 2.0e-006 243 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 2.9e-009 3.8e-012 -26.28 0.0 141 483 96 166 0.29193 1.6e-014 241 3 M5348_1.02 DRGX NTAATYHAATTAN 1.2e0000 1.6e-003 -6.46 0.0 106 488 138 449 0.21721 6.5e-006 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 2.0e-008 2.6e-011 -24.37 0.0 102 488 181 518 0.20902 1.1e-013 243 3 M5390_1.02 EN1 VBTAATTRSB 3.9e-002 5.1e-005 -9.88 0.0 229 491 297 514 0.46640 2.1e-007 245 3 M5394_1.02 EN2 NNTAATTRVN 7.6e0000 1.0e-002 -4.59 0.0 103 491 147 517 0.20978 4.2e-005 245 3 M5414_1.02 ESX1 SNTAATTRRN 1.2e-001 1.6e-004 -8.76 0.0 213 491 285 528 0.43381 6.4e-007 245 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 5.9e0000 7.9e-003 -4.84 0.0 13 487 29 455 0.02669 3.3e-005 243 3 M5446_1.02 FOXD4L2 GTAAACA 1.9e-001 2.6e-004 -8.27 0.0 216 494 302 561 0.43725 1.0e-006 246 3 M5460_1.02 FOXL1 RTAAACA 2.2e0000 3.0e-003 -5.82 0.0 226 494 297 541 0.45749 1.2e-005 246 3 M5481_1.02 GBX2 NYTAATTRSB 2.2e0000 2.9e-003 -5.83 0.0 229 491 286 509 0.46640 1.2e-005 245 3 M5502_1.02 GSX1 NBTAATKRSN 5.7e0000 7.6e-003 -4.89 0.0 127 491 179 529 0.25866 3.1e-005 245 3 M5503_1.02 GSX2 DYTAATKRVN 5.8e0000 7.7e-003 -4.87 0.0 101 491 152 545 0.20570 3.2e-005 245 3 M5543_1.02 HOXB5 NHTAATKRNN 1.8e-014 2.4e-017 -38.25 0.0 101 491 212 572 0.20570 1.0e-019 245 3 M5547_1.02 HOXC11 DGTCRTWAAAH 1.4e-001 1.8e-004 -8.62 0.0 110 490 154 481 0.22449 7.4e-007 244 3 M5555_1.02 HOXD11 RTCGTAAAAH 5.1e-001 6.9e-004 -7.29 0.0 109 491 141 446 0.22200 2.8e-006 245 3 M5584_1.02 ISX YTAATCTAATTAR 3.2e0000 4.2e-003 -5.47 0.0 32 488 45 351 0.06557 1.7e-005 243 3 M5587_1.02 JDP2 ATGASTCAT 1.7e-012 2.3e-015 -33.71 0.0 202 492 280 459 0.41057 9.4e-018 245 3 M5594_1.02 LBX2 CTBRANSTRATTA 3.2e-002 4.2e-005 -10.08 0.0 148 488 228 563 0.30328 1.7e-007 243 3 M5602_1.02 LHX9 YTAATTRN 3.4e-001 4.5e-004 -7.70 0.0 127 493 186 533 0.25761 1.8e-006 246 3 M5604_1.02 LMX1A YTAATTAA 2.0e-002 2.6e-005 -10.55 0.0 101 493 146 477 0.20487 1.1e-007 246 3 M5623_1.02 MEOX1 VSTAATTANC 5.3e-002 7.0e-005 -9.56 0.0 203 491 267 510 0.41344 2.9e-007 245 3 M5624_1.02 MEOX2 NSTAATTAWN 2.9e-001 3.9e-004 -7.85 0.0 199 491 272 537 0.40530 1.6e-006 245 3 M5631_1.02 MIXL1 NBTAATTRVN 1.6e-001 2.2e-004 -8.43 0.0 101 491 155 527 0.20570 8.9e-007 245 3 M5632_1.02 MLX RTCACGTGAT 1.6e-001 2.1e-004 -8.47 0.0 31 491 46 337 0.06314 8.6e-007 245 3 M5672_1.02 NOTO NBTAATTARN 2.1e-002 2.8e-005 -10.49 0.0 107 491 170 539 0.21792 1.1e-007 245 3 M5689_1.02 NRL DWWNTGCTGAC 9.1e0000 1.2e-002 -4.41 0.0 176 490 255 581 0.35918 5.0e-005 244 3 M5704_1.02 PAX3 TAATYRATTA 1.3e0000 1.8e-003 -6.32 0.0 159 491 132 296 0.32383 7.3e-006 245 3 M5705_1.02 PAX4 YTAATTAG 1.2e-005 1.6e-008 -17.97 0.0 101 493 169 517 0.20487 6.4e-011 246 3 M5709_1.02 PAX7 WAATYRATTA 5.6e-014 7.5e-017 -37.13 0.0 107 491 181 446 0.21792 3.0e-019 245 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 3.9e0000 5.3e-003 -5.25 0.0 140 484 77 177 0.28926 2.2e-005 241 3 M5740_1.02 POU4F1 ATGMATAATTAATG 1.5e-013 2.0e-016 -36.16 0.0 105 487 192 490 0.21561 8.2e-019 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 3.6e-011 4.8e-014 -30.68 0.0 93 485 170 484 0.19175 2.0e-016 242 3 M5746_1.02 POU6F2 WTAATKAGST 6.5e-001 8.7e-004 -7.04 0.0 103 491 151 512 0.20978 3.6e-006 245 3 M5772_1.02 RAX2 BTAATTRR 1.1e0000 1.5e-003 -6.52 0.0 101 493 151 527 0.20487 6.0e-006 246 3 M5875_1.02 TBX1 AGGTGTGAAAAAAGGTGTGA 3.0e-003 3.9e-006 -12.45 0.0 95 481 88 253 0.19751 1.6e-008 240 3 M5932_1.02 TFEC VTCAYGTGAY 2.1e0000 2.7e-003 -5.90 0.0 49 491 87 545 0.09980 1.1e-005 245 3 M5941_1.02 UNCX NTAATYBAATTAN 3.6e-005 4.8e-008 -16.86 0.0 106 488 177 526 0.21721 2.0e-010 243 3 M5944_1.02 VAX1 YTAATTAN 9.5e-001 1.3e-003 -6.67 0.0 131 493 185 522 0.26572 5.2e-006 246 3 M5945_1.02 VAX2 YTAATTAN 1.6e-001 2.2e-004 -8.42 0.0 99 493 152 524 0.20081 8.9e-007 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 5.0e-004 6.7e-007 -14.22 0.0 179 489 178 340 0.36605 2.7e-009 244 3 M6111_1.02 (ZNF652)_(Mus_musculus)_(DBD_1.00) NBAAAGGGTTAAH 7.8e-001 1.0e-003 -6.87 0.0 96 488 103 345 0.19672 4.3e-006 243 3 M6157_1.02 BARX2 TYRWTAATKR 4.8e0000 6.5e-003 -5.04 0.0 195 491 243 498 0.39715 2.6e-005 245 3 M6162_1.02 ARNTL GRGTCACGTGTYCM 8.6e0000 1.1e-002 -4.47 0.0 205 487 200 384 0.42094 4.7e-005 243 3 M6174_1.02 CEBPZ AGCCAATSAGH 2.6e0000 3.5e-003 -5.66 0.0 182 490 226 486 0.37143 1.4e-005 244 3 M6186_1.02 DBP BVTTRCATAAB 2.7e-001 3.5e-004 -7.95 0.0 148 490 211 529 0.30204 1.5e-006 244 3 M6228_1.02 FOSB CTGACTCAYV 7.9e-005 1.1e-007 -16.06 0.0 185 491 283 561 0.37678 4.3e-010 245 3 M6269_1.02 HBP1 AYYCATTGA 2.9e-019 3.8e-022 -49.31 0.0 96 492 210 546 0.19512 1.6e-024 245 3 M6277_1.02 HLF SKRTTACRYAAYC 2.5e0000 3.3e-003 -5.70 0.0 148 488 171 429 0.30328 1.4e-005 243 3 M6282_1.02 HNF1B GTTAAWYATTAACY 4.6e-008 6.2e-011 -23.51 0.0 109 487 188 516 0.22382 2.5e-013 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 1.4e-009 1.9e-012 -26.98 0.0 103 487 182 504 0.21150 7.9e-015 243 3 M6291_1.02 HOXA1 CATCCATCMA 5.6e-013 7.5e-016 -34.82 0.0 87 491 179 537 0.17719 3.1e-018 245 3 M6292_1.02 HOXA5 CATTAATYAR 6.9e-013 9.2e-016 -34.62 0.0 107 491 201 521 0.21792 3.8e-018 245 3 M6293_1.02 HOXA7 KCCAATCKATYGAKB 3.9e-002 5.2e-005 -9.86 0.0 102 486 165 546 0.20988 2.2e-007 242 3 M6295_1.02 HOXB1 CCATCMATCW 8.3e0000 1.1e-002 -4.50 0.0 169 491 194 445 0.34420 4.5e-005 245 3 M6296_1.02 HOXB6 KKCATMAATCAWY 5.7e-016 7.6e-019 -41.72 0.0 144 488 235 467 0.29508 3.1e-021 243 3 M6297_1.02 HOXB7 MATYAATCAA 1.4e-020 1.8e-023 -52.37 0.0 107 491 213 497 0.21792 7.3e-026 245 3 M6298_1.02 HOXB8 BMATTAATCAA 1.4e-022 1.8e-025 -56.98 0.0 104 490 210 484 0.21224 7.4e-028 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 4.7e-004 6.3e-007 -14.28 0.0 116 486 126 326 0.23868 2.6e-009 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 2.2e-022 3.0e-025 -56.47 0.0 139 487 272 533 0.28542 1.2e-027 243 3 M6303_1.02 HOXD4 TTAATTKW 3.3e-014 4.5e-017 -37.65 0.0 103 493 207 549 0.20892 1.8e-019 246 3 M6329_1.02 LHX3 AAAATTAATTARY 4.7e-015 6.2e-018 -39.62 0.0 106 488 188 461 0.21721 2.6e-020 243 3 M6333_1.02 MAFG MATGACT 4.8e-006 6.4e-009 -18.87 0.0 218 494 330 570 0.44130 2.6e-011 246 3 M6338_1.02 NR3C2 YMCHWCAACCWGKHCTD 1.3e0000 1.7e-003 -6.38 0.0 164 484 237 553 0.33884 7.0e-006 241 3 M6357_1.02 NANOG KTTAATGG 1.8e-001 2.4e-004 -8.33 0.0 63 493 103 505 0.12779 9.8e-007 246 3 M6359_1.02 NFE2L1 NATGACD 4.1e-013 5.4e-016 -35.15 0.0 134 494 258 588 0.27126 2.2e-018 246 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 2.3e-001 3.0e-004 -8.11 0.0 173 489 260 578 0.35378 1.2e-006 244 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 1.1e0000 1.4e-003 -6.55 0.0 147 487 161 395 0.30185 5.9e-006 243 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 4.1e-003 5.4e-006 -12.13 0.0 98 480 136 427 0.20417 2.3e-008 239 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 2.4e-008 3.2e-011 -24.17 0.0 129 483 221 533 0.26708 1.3e-013 241 3 M6411_1.02 PAX8 BTVAYTSRMGYRKR 2.5e-002 3.3e-005 -10.31 0.0 99 487 172 588 0.20329 1.4e-007 243 3 M6412_1.02 PBX1 VHMATCAATCAAWYH 6.5e-012 8.6e-015 -32.39 0.0 98 486 194 544 0.20165 3.6e-017 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 2.1e-003 2.8e-006 -12.77 0.0 142 486 224 555 0.29218 1.2e-008 242 3 M6415_1.02 PDX1 CTAATTACY 9.6e-001 1.3e-003 -6.66 0.0 100 492 136 468 0.20325 5.2e-006 245 3 M6417_1.02 POU1F1 RWATATTCATKAR 7.3e-003 9.8e-006 -11.54 0.0 30 488 67 541 0.06148 4.0e-008 243 3 M6419_1.02 PKNOX1 MATCARTCAABYB 1.3e-003 1.8e-006 -13.24 0.0 182 488 270 549 0.37295 7.4e-009 243 3 M6426_1.02 POU3F2 CATRAATWWT 1.0e0000 1.3e-003 -6.62 0.0 101 491 156 545 0.20570 5.5e-006 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 2.1e-003 2.8e-006 -12.78 0.0 108 488 158 472 0.22131 1.2e-008 243 3 M6440_1.02 PRRX2 YTAATTR 8.3e-001 1.1e-003 -6.81 0.0 100 494 149 522 0.20243 4.5e-006 246 3 M6510_1.02 TEF TGTTTATRTAAMTK 1.1e0000 1.4e-003 -6.54 0.0 297 487 356 505 0.60986 5.9e-006 243 3 M6534_1.02 VSX2 WDMGCTAATTA 2.6e0000 3.4e-003 -5.68 0.0 208 490 219 415 0.42449 1.4e-005 244 3 M6546_1.02 ZFHX3 ATTAWTAATTA 4.9e-002 6.6e-005 -9.63 0.0 108 490 141 433 0.22041 2.7e-007 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).