# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF239.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF239.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF239.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF239.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:07:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF239.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:07:25 PDT 2018) # host: kadru # when: Thu May 10 17:58:44 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.247 C 0.245 G 0.256 T 0.253 MOTIF CTGANAAG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CTGANAAG CTTNTCAG 251 14 9.0e-071 2.8e-066 # CTGAGAAG CTTCTCAG 104 3 1.2e-029 3.9e-025 # CTGATAAG CTTATCAG 71 1 1.8e-021 5.7e-017 # CTGACAAG CTTGTCAG 58 6 1.4e-012 4.4e-008 # CTGAAAAG CTTTTCAG 22 4 2.3e-004 7.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 258 E= 2.8e-066 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.085271 0.228682 0.410853 0.275194 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TCCYGCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TCCYGCA TGCRGGA 145 10 6.5e-036 2.0e-031 # TCCTGCA TGCAGGA 132 10 1.2e-031 3.7e-027 # TCCCGCA TGCGGGA 13 0 1.1e-004 3.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 148 E= 2.0e-031 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.108108 0.000000 0.891892 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCCTTTR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCCTTTR YAAAGGC 133 16 3.0e-027 9.2e-023 # GCCTTTA TAAAGGC 97 6 3.6e-024 1.1e-019 # GCCTTTG CAAAGGC 38 10 2.2e-005 6.8e-001 letter-probability matrix: alength= 4 w= 7 nsites= 138 E= 9.2e-023 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.724638 0.000000 0.275362 0.000000 MOTIF AAASAAAM DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AAASAAAM KTTTSTTT 53 7 1.5e-010 4.7e-006 # AAACAAAA TTTTGTTT 16 2 6.1e-004 1.9e+001 # AAACAAAC GTTTGTTT 10 0 9.4e-004 2.9e+001 # AAAGAAAC GTTTCTTT 17 3 1.2e-003 3.7e+001 # AAAGAAAA TTTTCTTT 14 2 2.0e-003 6.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 4.7e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.457627 0.542373 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.542373 0.457627 0.000000 0.000000 MOTIF AGCCTTSA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGCCTTSA TSAAGGCT 36 5 2.6e-007 8.0e-003 # AGCCTTGA TCAAGGCT 19 1 1.8e-005 5.4e-001 # AGCCTTCA TGAAGGCT 17 4 3.4e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 8.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.472222 0.527778 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTSTTTA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTSTTTA TAAASAG 36 5 2.6e-007 8.0e-003 # CTGTTTA TAAACAG 29 5 1.5e-005 4.6e-001 # CTCTTTA TAAAGAG 7 0 7.7e-003 2.3e+002 letter-probability matrix: alength= 4 w= 7 nsites= 38 E= 8.0e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.184211 0.815789 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 30.32 seconds