# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 GCAGACATYACTAATC MEME-1 GCAGACATYACTAATC 2.0e-167 2.7e-170 -390.44 0.0 85 485 282 315 0.17526 1.1e-172 242 1 AMAMAYAMAYAAAYAMAYAAAYAMATAMAYAMAYAAATAMATAAAYAAA MEME-2 AMAMAYAMAYAAAYAMAYAAAYAMATAMAYAMAYAAATAMATAAAYAAA 7.4e-016 9.8e-019 -41.46 0.0 56 452 43 72 0.12389 4.4e-021 225 1 CMHMYYYCCCYTCCYDYGCCCA MEME-3 CMHMYYYCCCYTCCYDYGCCCA 9.0e-026 1.2e-028 -64.29 0.0 75 479 202 568 0.15658 5.0e-031 239 1 GAAAGAGTGCTGTGAT MEME-4 GAAAGAGTGCTGTGAT 4.9e-037 6.5e-040 -90.23 0.0 117 485 227 408 0.24124 2.7e-042 242 1 YCAYCAYCAYCATCATCAYCAYCATCAYYAYCACCATCATCAT MEME-5 YCAYCAYCAYCATCATCAYCAYCATCAYYAYCACCATCATCAT 8.7e0000 1.2e-002 -4.46 0.0 48 458 9 17 0.10480 5.1e-005 228 1 TKKKGKGTGTGTGTGWKTGTRTGTGTGTG MEME-6 TKKKGKGTGTGTGTGWKTGTRTGTGTGTG 3.6e-003 4.8e-006 -12.24 0.0 142 472 99 202 0.30085 2.1e-008 235 1 TGATYRATTRGTRATGTCTGCC MEME-8 TGATYRATTRGTRATGTCTGCC 2.9e-162 3.9e-165 -378.56 0.0 81 479 275 312 0.16910 1.6e-167 239 1 TGGCAAATAYATRGCAYRYRTR MEME-10 TGGCAAATAYATRGCAYRYRTR 7.7e-015 1.0e-017 -39.11 0.0 123 479 78 119 0.25678 4.3e-020 239 2 ATGYCTGC DREME-1 ATGTCTGC 5.3e-141 7.1e-144 -329.62 0.0 83 493 237 268 0.16836 2.9e-146 246 2 AATCVAT DREME-2 AATCAAT 2.8e-058 3.7e-061 -139.14 0.0 90 494 158 228 0.18219 1.5e-063 246 2 ATTAGTR DREME-3 ATTAGTG 2.4e-058 3.2e-061 -139.28 0.0 64 494 117 168 0.12955 1.3e-063 246 2 CAKGGGCA DREME-5 CATGGGCA 7.5e-019 1.0e-021 -48.35 0.0 55 493 51 95 0.11156 4.1e-024 246 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 3.2e0000 4.3e-003 -5.44 0.0 50 492 86 534 0.10163 1.8e-005 245 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 2.0e-015 2.7e-018 -40.45 0.0 49 491 129 545 0.09980 1.1e-020 245 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 2.9e0000 3.8e-003 -5.57 0.0 154 490 221 554 0.31429 1.6e-005 244 3 M0890_1.02 LHX6 NYAATCAN 3.3e-028 4.5e-031 -69.89 0.0 69 493 186 538 0.13996 1.8e-033 246 3 M0892_1.02 EMX1 NYTAATKAVN 2.7e-007 3.6e-010 -21.74 0.0 39 491 90 511 0.07943 1.5e-012 245 3 M0893_1.02 ZFHX2 NNTAATTANN 1.2e-022 1.5e-025 -57.13 0.0 53 491 136 461 0.10794 6.3e-028 245 3 M0894_1.02 LBX1 TTAATTAG 4.9e-003 6.5e-006 -11.94 0.0 47 493 85 478 0.09533 2.7e-008 246 3 M0896_1.02 VENTX TTAATTAG 6.4e-015 8.6e-018 -39.30 0.0 73 493 150 475 0.14807 3.5e-020 246 3 M0900_1.02 SHOX HTAATTRV 2.2e-009 2.9e-012 -26.57 0.0 69 493 138 510 0.13996 1.2e-014 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.7e-006 2.3e-009 -19.90 0.0 70 492 125 480 0.14228 9.3e-012 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 1.5e-014 1.9e-017 -38.48 0.0 71 491 128 392 0.14460 7.9e-020 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 1.9e-012 2.5e-015 -33.61 0.0 74 492 151 501 0.15041 1.0e-017 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.8e-013 2.4e-016 -35.96 0.0 67 493 141 486 0.13590 9.8e-019 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 1.0e-003 1.4e-006 -13.48 0.0 52 494 91 464 0.10526 5.7e-009 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 1.3e-024 1.7e-027 -61.64 0.0 68 494 173 519 0.13765 6.9e-030 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 1.9e-003 2.6e-006 -12.86 0.0 70 492 126 538 0.14228 1.1e-008 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 3.4e-019 4.6e-022 -49.14 0.0 70 492 170 541 0.14228 1.9e-024 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 7.5e-014 1.0e-016 -36.84 0.0 74 492 157 511 0.15041 4.1e-019 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 9.0e-012 1.2e-014 -32.05 0.0 48 492 115 520 0.09756 4.9e-017 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 8.1e-006 1.1e-008 -18.34 0.0 70 492 126 496 0.14228 4.4e-011 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 3.6e-022 4.9e-025 -55.98 0.0 71 493 159 459 0.14402 2.0e-027 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 3.6e0000 4.8e-003 -5.34 0.0 46 492 77 507 0.09350 2.0e-005 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 4.9e-003 6.6e-006 -11.94 0.0 52 492 93 491 0.10569 2.7e-008 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 4.2e-005 5.7e-008 -16.69 0.0 70 492 122 487 0.14228 2.3e-010 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 7.8e-002 1.0e-004 -9.17 0.0 69 493 110 492 0.13996 4.2e-007 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.8e-001 2.4e-004 -8.35 0.0 70 492 116 526 0.14228 9.6e-007 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 4.8e-004 6.5e-007 -14.25 0.0 53 491 103 529 0.10794 2.6e-009 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 5.0e-014 6.7e-017 -37.24 0.0 48 492 118 501 0.09756 2.7e-019 245 3 M1592_1.02 (SOX3)_(Mus_musculus)_(DBD_1.00) NNNWCAAT 4.3e-002 5.8e-005 -9.76 0.0 105 493 132 413 0.21298 2.4e-007 246 3 M1605_1.02 (SOX1)_(Mus_musculus)_(DBD_1.00) ATTSWHNNNN 1.2e-004 1.6e-007 -15.65 0.0 69 491 132 554 0.14053 6.5e-010 245 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 4.6e-012 6.2e-015 -32.72 0.0 86 488 157 464 0.17623 2.5e-017 243 3 M2289_1.02 JUN DDRATGATGTMAT 8.8e0000 1.2e-002 -4.44 0.0 126 488 160 469 0.25820 4.9e-005 243 3 M2301_1.02 NFYB VHMYBRRCCAATCAG 4.2e-003 5.7e-006 -12.08 0.0 86 486 124 434 0.17695 2.3e-008 242 3 M4459_1.02 EGR1 SBGCGKGGGCGGVRGSGSGG 8.3e0000 1.1e-002 -4.50 0.0 59 481 84 448 0.12266 4.6e-005 240 3 M4473_1.02 PBX3 NBCDGCCAATSRGVR 5.8e-002 7.7e-005 -9.47 0.0 86 486 141 531 0.17695 3.2e-007 242 3 M4636_1.02 THAP1 YTGCCCDBANYMAAGATGGCG 1.5e-009 2.0e-012 -26.96 0.0 62 480 87 286 0.12917 8.2e-015 239 3 M4930_1.02 (NPAS4)_(Drosophila_melanogaster)_(DBD_0.61) RADTCGTGACT 6.3e-001 8.4e-004 -7.09 0.0 52 490 76 424 0.10612 3.4e-006 244 3 M5284_1.02 ALX3 BNTAATTRGY 2.3e-004 3.1e-007 -14.98 0.0 69 491 119 490 0.14053 1.3e-009 245 3 M5294_1.02 BARHL2 NHTAAAYGNY 1.4e-004 1.9e-007 -15.47 0.0 39 491 82 511 0.07943 7.8e-010 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 7.3e-007 9.8e-010 -20.75 0.0 66 484 103 380 0.13636 4.1e-012 241 3 M5310_1.02 BSX NTAATBRS 3.1e-006 4.2e-009 -19.29 0.0 69 493 126 496 0.13996 1.7e-011 246 3 M5323_1.02 CREB3 KGRTGACGTCAYNV 1.2e-017 1.6e-020 -45.59 0.0 47 487 86 281 0.09651 6.5e-023 243 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 3.4e-009 4.6e-012 -26.10 0.0 87 483 60 125 0.18012 1.9e-014 241 3 M5342_1.02 DLX4 NTAATTRB 6.6e-002 8.8e-005 -9.34 0.0 53 493 96 529 0.10751 3.6e-007 246 3 M5344_1.02 DLX6 NTAATTRB 7.7e-003 1.0e-005 -11.48 0.0 47 493 90 528 0.09533 4.2e-008 246 3 M5388_1.02 EMX2 VYTAATTAVB 1.6e-008 2.1e-011 -24.59 0.0 41 491 89 459 0.08350 8.5e-014 245 3 M5390_1.02 EN1 VBTAATTRSB 4.1e-015 5.5e-018 -39.75 0.0 53 491 130 515 0.10794 2.2e-020 245 3 M5394_1.02 EN2 NNTAATTRVN 1.5e-015 2.0e-018 -40.76 0.0 53 491 129 502 0.10794 8.1e-021 245 3 M5414_1.02 ESX1 BNTAATTRRN 3.4e-012 4.6e-015 -33.02 0.0 69 491 149 526 0.14053 1.9e-017 245 3 M5427_1.02 EVX1 SNTAATYABB 6.8e-001 9.1e-004 -7.00 0.0 69 491 109 510 0.14053 3.7e-006 245 3 M5428_1.02 EVX2 NNTAATKABB 8.8e-006 1.2e-008 -18.26 0.0 69 491 128 514 0.14053 4.8e-011 245 3 M5480_1.02 GBX1 RSTAATTRGB 2.0e-012 2.7e-015 -33.55 0.0 53 491 118 477 0.10794 1.1e-017 245 3 M5481_1.02 GBX2 NYTAATTRSB 5.6e-009 7.4e-012 -25.62 0.0 69 491 136 505 0.14053 3.0e-014 245 3 M5500_1.02 GSC VYTAATCCSH 6.8e-004 9.0e-007 -13.92 0.0 69 491 125 529 0.14053 3.7e-009 245 3 M5502_1.02 GSX1 NBTAATKRSN 2.1e-011 2.9e-014 -31.18 0.0 53 491 125 536 0.10794 1.2e-016 245 3 M5503_1.02 GSX2 DYTAATKRVN 2.3e-012 3.1e-015 -33.42 0.0 53 491 125 522 0.10794 1.2e-017 245 3 M5518_1.02 HMX1 NNTTAATTGNT 7.3e-002 9.8e-005 -9.23 0.0 66 490 112 520 0.13469 4.0e-007 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 1.4e0000 1.8e-003 -6.31 0.0 72 490 119 548 0.14694 7.5e-006 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 1.0e0000 1.4e-003 -6.60 0.0 78 490 128 550 0.15918 5.6e-006 244 3 M5541_1.02 HOXB2 NNTAATKANN 3.5e-003 4.7e-006 -12.28 0.0 69 491 121 521 0.14053 1.9e-008 245 3 M5542_1.02 HOXB3 NYTAATKRNN 4.1e-005 5.5e-008 -16.72 0.0 69 491 128 524 0.14053 2.2e-010 245 3 M5543_1.02 HOXB5 NHTAATKRNN 6.6e-015 8.8e-018 -39.27 0.0 53 491 135 548 0.10794 3.6e-020 245 3 M5563_1.02 HOXD8 VHWAATTADV 8.4e-005 1.1e-007 -16.00 0.0 23 491 59 517 0.04684 4.6e-010 245 3 M5582_1.02 IRX5 SWTGTYRTGTWN 4.9e0000 6.6e-003 -5.02 0.0 83 489 131 548 0.16973 2.7e-005 244 3 M5587_1.02 JDP2 ATGASTCAT 2.6e-017 3.5e-020 -44.81 0.0 64 492 130 413 0.13008 1.4e-022 245 3 M5602_1.02 LHX9 YTAATTRN 4.1e-008 5.4e-011 -23.63 0.0 73 493 142 521 0.14807 2.2e-013 246 3 M5604_1.02 LMX1A YTAATTAA 1.1e-012 1.5e-015 -34.16 0.0 73 493 144 472 0.14807 5.9e-018 246 3 M5605_1.02 LMX1B TTAATTRN 5.4e-006 7.2e-009 -18.76 0.0 41 493 88 505 0.08316 2.9e-011 246 3 M5623_1.02 MEOX1 VSTAATTANC 1.2e-014 1.6e-017 -38.69 0.0 47 491 118 504 0.09572 6.4e-020 245 3 M5624_1.02 MEOX2 NSTAATTAWN 2.5e-016 3.3e-019 -42.55 0.0 53 491 135 530 0.10794 1.4e-021 245 3 M5631_1.02 MIXL1 NBTAATTRVN 3.1e-009 4.2e-012 -26.21 0.0 71 491 141 512 0.14460 1.7e-014 245 3 M5635_1.02 MNX1 TTTAATTRNH 1.5e-004 2.0e-007 -15.41 0.0 53 491 100 497 0.10794 8.3e-010 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTGS 6.4e-008 8.5e-011 -23.19 0.0 53 483 87 350 0.10973 3.5e-013 241 3 M5672_1.02 NOTO NBTAATTARN 9.2e0000 1.2e-002 -4.40 0.0 69 491 103 504 0.14053 5.0e-005 245 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 4.3e-018 5.8e-021 -46.60 0.0 61 487 129 415 0.12526 2.4e-023 243 3 M5702_1.02 PAX1 DKCABTCAWGCGTGACG 4.5e0000 6.0e-003 -5.11 0.0 38 484 36 221 0.07851 2.5e-005 241 3 M5704_1.02 PAX3 TAATYRATTA 1.2e-050 1.6e-053 -121.58 0.0 73 491 174 336 0.14868 6.4e-056 245 3 M5705_1.02 PAX4 YTAATTAG 1.7e-002 2.3e-005 -10.69 0.0 27 493 54 448 0.05477 9.2e-008 246 3 M5709_1.02 PAX7 WAATYRATTA 1.9e-053 2.6e-056 -128.00 0.0 73 491 199 406 0.14868 1.1e-058 245 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 3.8e0000 5.0e-003 -5.30 0.0 42 484 31 159 0.08678 2.1e-005 241 3 M5740_1.02 POU4F1 ATGMATAATTAATG 2.0e-027 2.7e-030 -68.10 0.0 51 487 139 448 0.10472 1.1e-032 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 3.2e-029 4.2e-032 -72.24 0.0 49 485 137 437 0.10103 1.8e-034 242 3 M5771_1.02 RAX DYTAATTRRY 1.4e-012 1.9e-015 -33.91 0.0 49 491 115 496 0.09980 7.6e-018 245 3 M5772_1.02 RAX2 BTAATTRR 6.1e-016 8.1e-019 -41.65 0.0 69 493 155 513 0.13996 3.3e-021 246 3 M5807_1.02 SHOX2 YTAATTRR 4.4e-004 5.9e-007 -14.35 0.0 47 493 91 500 0.09533 2.4e-009 246 3 M5934_1.02 TGIF2 TGACASCTGTCA 3.3e-001 4.4e-004 -7.72 0.0 27 489 42 344 0.05521 1.8e-006 244 3 M5944_1.02 VAX1 YTAATTAN 8.8e-004 1.2e-006 -13.66 0.0 51 493 96 506 0.10345 4.8e-009 246 3 M5945_1.02 VAX2 YTAATTAN 8.1e-007 1.1e-009 -20.65 0.0 53 493 108 510 0.10751 4.4e-012 246 3 M5949_1.02 VSX1 YTAATTAN 1.5e-005 2.0e-008 -17.72 0.0 47 493 94 491 0.09533 8.2e-011 246 3 M5955_1.02 YY2 WAATGGCGGWY 3.6e-002 4.8e-005 -9.94 0.0 18 490 45 515 0.03673 2.0e-007 244 3 M6150_1.02 ARNT2 GYSYSCCACGNC 1.1e-009 1.5e-012 -27.24 0.0 61 489 140 576 0.12474 6.0e-015 244 3 M6157_1.02 BARX2 TYRWTAATKR 3.4e-027 4.5e-030 -67.58 0.0 65 491 168 489 0.13238 1.8e-032 245 3 M6180_1.02 CREB1 RTGACGTMA 2.7e-012 3.6e-015 -33.27 0.0 48 492 120 541 0.09756 1.5e-017 245 3 M6181_1.02 CREM CRVTGACGTCA 6.7e-006 8.9e-009 -18.53 0.0 50 490 100 499 0.10204 3.7e-011 244 3 M6184_1.02 CUX1 RBRSNDATCGATSB 7.0e-014 9.3e-017 -36.91 0.0 77 487 164 521 0.15811 3.8e-019 243 3 M6197_1.02 E4F1 YGTKACGTC 4.7e-015 6.3e-018 -39.60 0.0 56 492 123 455 0.11382 2.6e-020 245 3 M6212_1.02 EPAS1 CMCACGYAYDCAC 7.9e-001 1.1e-003 -6.85 0.0 76 488 119 513 0.15574 4.4e-006 243 3 M6240_1.02 FOXI1 RRCCAATCAVAR 2.6e-004 3.4e-007 -14.89 0.0 77 489 115 422 0.15746 1.4e-009 244 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 1.7e-002 2.3e-005 -10.69 0.0 70 488 129 573 0.14344 9.4e-008 243 3 M6247_1.02 FOXO4 MRTAAACAA 6.9e-001 9.2e-004 -7.00 0.0 68 492 111 530 0.13821 3.7e-006 245 3 M6257_1.02 GATA5 WVANWGATAABTYRRHK 8.7e-003 1.2e-005 -11.36 0.0 70 484 121 519 0.14463 4.8e-008 241 3 M6262_1.02 GFI1B WGCMGTGATTT 2.7e-004 3.7e-007 -14.82 0.0 82 490 147 544 0.16735 1.5e-009 244 3 M6263_1.02 GFI1 RCWSTGATTT 8.6e-002 1.2e-004 -9.07 0.0 95 491 155 553 0.19348 4.7e-007 245 3 M6268_1.02 HAND1 AAWKCCAGAYVC 4.9e-003 6.5e-006 -11.94 0.0 45 489 93 565 0.09202 2.7e-008 244 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 4.7e0000 6.3e-003 -5.07 0.0 31 485 38 291 0.06392 2.6e-005 242 3 M6278_1.02 HLTF KANKGCTGSMAM 1.3e-005 1.7e-008 -17.90 0.0 49 489 110 584 0.10020 6.9e-011 244 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 6.3e-001 8.3e-004 -7.09 0.0 36 486 59 430 0.07407 3.5e-006 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 1.8e-001 2.4e-004 -8.35 0.0 47 487 78 460 0.09651 9.8e-007 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 2.0e-022 2.7e-025 -56.57 0.0 61 487 148 465 0.12526 1.1e-027 243 3 M6291_1.02 HOXA1 CATCCATCMA 2.1e-019 2.9e-022 -49.60 0.0 75 491 170 506 0.15275 1.2e-024 245 3 M6292_1.02 HOXA5 CATTAATYAR 6.0e-052 8.0e-055 -124.56 0.0 69 491 212 479 0.14053 3.3e-057 245 3 M6295_1.02 HOXB1 CCATCMATCW 1.4e-008 1.8e-011 -24.74 0.0 91 491 147 438 0.18534 7.4e-014 245 3 M6296_1.02 HOXB6 KKCATMAATCAWY 2.9e-047 3.9e-050 -113.77 0.0 84 488 201 397 0.17213 1.6e-052 243 3 M6297_1.02 HOXB7 MATYAATCAA 1.7e-038 2.3e-041 -93.58 0.0 89 491 209 446 0.18126 9.3e-044 245 3 M6298_1.02 HOXB8 BMATTAATCAA 1.4e-039 1.8e-042 -96.10 0.0 74 490 183 418 0.15102 7.6e-045 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 3.9e-011 5.3e-014 -30.58 0.0 48 486 78 293 0.09877 2.2e-016 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 1.3e-011 1.7e-014 -31.70 0.0 75 487 147 481 0.15400 7.0e-017 243 3 M6302_1.02 HOXD13 TCYCTAATAAA 7.3e-004 9.8e-007 -13.84 0.0 56 490 110 550 0.11429 4.0e-009 244 3 M6304_1.02 HOXD9 HMATNAAWYT 1.8e-001 2.3e-004 -8.36 0.0 53 491 90 497 0.10794 9.5e-007 245 3 M6328_1.02 LHX2 YRSDTKYAATWAG 3.3e-004 4.4e-007 -14.65 0.0 46 488 86 464 0.09426 1.8e-009 243 3 M6329_1.02 LHX3 AAAATTAATTARY 1.1e-016 1.5e-019 -43.35 0.0 72 488 129 370 0.14754 6.2e-022 243 3 M6348_1.02 MTF1 MGKGCCGTGYGCAAADS 8.2e-001 1.1e-003 -6.82 0.0 50 484 70 392 0.10331 4.5e-006 241 3 M6373_1.02 NFYC YAGCCAATSAGVGS 2.6e0000 3.5e-003 -5.66 0.0 77 487 123 540 0.15811 1.4e-005 243 3 M6380_1.02 NOBOX HTAATTRSY 2.5e-001 3.4e-004 -8.00 0.0 52 492 89 504 0.10569 1.4e-006 245 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 3.5e-001 4.7e-004 -7.66 0.0 36 480 54 372 0.07500 2.0e-006 239 3 M6400_1.02 OTX1 BTAAKCCT 1.5e0000 1.9e-003 -6.24 0.0 79 493 125 535 0.16024 7.9e-006 246 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 1.5e-015 2.0e-018 -40.74 0.0 53 483 134 527 0.10973 8.4e-021 241 3 M6412_1.02 PBX1 VHMATCAATCAAWYH 1.4e-025 1.9e-028 -63.84 0.0 78 486 191 517 0.16049 7.7e-031 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 7.6e-022 1.0e-024 -55.24 0.0 78 486 190 544 0.16049 4.2e-027 242 3 M6415_1.02 PDX1 CTAATTACY 5.9e-005 7.9e-008 -16.36 0.0 54 492 95 452 0.10976 3.2e-010 245 3 M6419_1.02 PKNOX1 MATCARTCAABYB 2.1e-003 2.8e-006 -12.78 0.0 92 488 154 533 0.18852 1.2e-008 243 3 M6429_1.02 POU6F1 CATAAWTTATGCR 6.2e0000 8.3e-003 -4.79 0.0 44 488 46 272 0.09016 3.4e-005 243 3 M6440_1.02 PRRX2 YTAATTR 5.8e-006 7.8e-009 -18.67 0.0 68 494 126 512 0.13765 3.2e-011 246 3 M6463_1.02 SMAD1 RSCCTGTCTGCC 6.2e-002 8.3e-005 -9.39 0.0 69 489 124 567 0.14110 3.4e-007 244 3 M6465_1.02 SMAD3 STGTCTGBCY 6.5e-031 8.7e-034 -76.13 0.0 61 491 187 575 0.12424 3.5e-036 245 3 M6466_1.02 SMAD4 TGTCTGBCY 3.5e-051 4.7e-054 -122.80 0.0 60 492 219 573 0.12195 1.9e-056 245 3 M6514_1.02 TFCP2 SCCWGMNMDSRCCRGA 1.8e-006 2.4e-009 -19.83 0.0 51 485 113 555 0.10515 1.0e-011 242 3 M6534_1.02 VSX2 WDMGCTAATTA 3.2e-009 4.3e-012 -26.18 0.0 46 490 88 393 0.09388 1.8e-014 244 3 M6546_1.02 ZFHX3 ATTAWTAATTA 4.9e-013 6.5e-016 -34.96 0.0 54 490 107 399 0.11020 2.7e-018 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).