# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF223.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF223.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF223.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF223.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:07:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF223.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:07:25 PDT 2018) # host: indra # when: Thu May 10 17:49:15 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.199 C 0.299 G 0.307 T 0.195 MOTIF CCTGSRCC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CCTGSRCC GGYSCAGG 226 32 3.8e-046 1.1e-041 # CCTGCACC GGTGCAGG 117 9 9.5e-028 2.8e-023 # CCTGGACC GGTCCAGG 37 5 1.4e-007 4.3e-003 # CCTGCGCC GGCGCAGG 41 9 1.8e-006 5.4e-002 # CCTGGGCC GGCCCAGG 40 10 8.1e-006 2.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 264 E= 1.1e-041 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.685606 0.314394 0.000000 0.674242 0.000000 0.325758 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCTGGRTC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCTGGRTC GAYCCAGG 56 2 1.7e-015 4.9e-011 # CCTGGGTC GACCCAGG 42 2 2.9e-011 8.4e-007 # CCTGGATC GATCCAGG 15 0 2.8e-005 8.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 4.9e-011 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCWCCACC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCWCCACC GGTGGWGC 59 9 6.6e-011 1.9e-006 # GCTCCACC GGTGGAGC 35 4 1.1e-007 3.3e-003 # GCACCACC GGTGGTGC 24 5 2.4e-004 6.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.9e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF MTGAGTCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST MTGAGTCA TGACTCAK 44 5 2.0e-009 5.8e-005 # ATGAGTCA TGACTCAT 30 3 5.2e-007 1.5e-002 # CTGAGTCA TGACTCAG 14 2 2.0e-003 5.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 5.8e-005 0.777778 0.222222 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGTRR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGGTRR YYACCT 193 109 1.4e-008 4.2e-004 # AGGTAA TTACCT 38 13 2.4e-004 6.9e+000 # AGGTAG CTACCT 32 13 2.8e-003 8.2e+001 # AGGTGA TCACCT 61 36 5.4e-003 1.6e+002 # AGGTGG CCACCT 83 56 9.4e-003 2.7e+002 letter-probability matrix: alength= 4 w= 6 nsites= 264 E= 4.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.409091 0.000000 0.590909 0.000000 0.530303 0.000000 0.469697 0.000000 MOTIF GCCTGTR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GCCTGTR YACAGGC 73 24 1.1e-007 3.1e-003 # GCCTGTG CACAGGC 58 22 2.0e-005 5.6e-001 # GCCTGTA TACAGGC 19 2 9.8e-005 2.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 86 E= 3.1e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.232558 0.000000 0.767442 0.000000 MOTIF CCSGCAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCSGCAC GTGCSGG 66 22 6.0e-007 1.7e-002 # CCCGCAC GTGCGGG 32 9 1.7e-004 4.9e+000 # CCGGCAC GTGCCGG 34 13 1.3e-003 3.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 72 E= 1.7e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.486111 0.513889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 31.96 seconds