******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:27695207-27695707 1.0000 100 chr19:33389946-33390446 1.0000 100 chr20:33401332-33401832 1.0000 100 chr16:81730087-81730587 1.0000 100 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1.0000 100 chr7:102572364-102572864 1.0000 100 chr12:66169688-66170188 1.0000 100 chr22:46053537-46054037 1.0000 100 chr19:37467276-37467776 1.0000 100 chr21:33480022-33480522 1.0000 100 chr15:72375755-72376255 1.0000 100 chr17:7234331-7234831 1.0000 100 chr10:102766786-10276728 1.0000 100 chr19:10976827-10977327 1.0000 100 chr5:134411708-134412208 1.0000 100 chr11:114159929-11416042 1.0000 100 chr19:41884131-41884631 1.0000 100 chr17:43483570-43484070 1.0000 100 chr5:175378341-175378841 1.0000 100 chr19:37251769-37252269 1.0000 100 chr5:34182285-34182785 1.0000 100 chr1:80403347-80403847 1.0000 100 chr19:33176887-33177387 1.0000 100 chr1:93179883-93180383 1.0000 100 chr5:41747187-41747687 1.0000 100 chr16:46495-46995 1.0000 100 chr19:31332901-31333401 1.0000 100 chr6:80132937-80133437 1.0000 100 chr1:45875975-45876475 1.0000 100 chr2:178484621-178485121 1.0000 100 chr10:50463973-50464473 1.0000 100 chr10:72580177-72580677 1.0000 100 chr17:32015530-32016030 1.0000 100 chr7:132255831-132256331 1.0000 100 chr19:34134470-34134970 1.0000 100 chr21:36122970-36123470 1.0000 100 chr5:96934889-96935389 1.0000 100 chr1:244652994-244653494 1.0000 100 chr19:44207401-44207901 1.0000 100 chr1:52955529-52956029 1.0000 100 chr19:40567071-40567571 1.0000 100 chr2:232473367-232473867 1.0000 100 chr19:37655843-37656343 1.0000 100 chr18:45755948-45756448 1.0000 100 chr19:2462937-2463437 1.0000 100 chr1:153880957-153881457 1.0000 100 chr17:61335935-61336435 1.0000 100 chr19:35881945-35882445 1.0000 100 chr19:40348252-40348752 1.0000 100 chr1:110176228-110176728 1.0000 100 chr19:40634424-40634924 1.0000 100 chr6:26537292-26537792 1.0000 100 chr15:65610890-65611390 1.0000 100 chr5:160008637-160009137 1.0000 100 chr1:93078873-93079373 1.0000 100 chr16:70778871-70779371 1.0000 100 chr5:140295382-140295882 1.0000 100 chr5:69521164-69521664 1.0000 100 chr8:25998523-25999023 1.0000 100 chr6:118660193-118660693 1.0000 100 chr17:25919958-25920458 1.0000 100 chr17:63842546-63843046 1.0000 100 chr1:78620097-78620597 1.0000 100 chr5:177404101-177404601 1.0000 100 chr5:109468672-109469172 1.0000 100 chr15:89383559-89384059 1.0000 100 chr1:232620479-232620979 1.0000 100 chr1:234724154-234724654 1.0000 100 chr19:37370952-37371452 1.0000 100 chr10:75379134-75379634 1.0000 100 chr19:48539554-48540054 1.0000 100 chr17:26885529-26886029 1.0000 100 chr1:143264418-143264918 1.0000 100 chr19:39341770-39342270 1.0000 100 chr1:181127036-181127536 1.0000 100 chr1_KI270709v1_random:7 1.0000 100 chr1:80054136-80054636 1.0000 100 chr19:39411882-39412382 1.0000 100 chr11:65919104-65919604 1.0000 100 chr2:165825017-165825517 1.0000 100 chr17:26619794-26620294 1.0000 100 chrX:73944010-73944510 1.0000 100 chr5:10601224-10601724 1.0000 100 chr10:87586170-87586670 1.0000 100 chr17:26603656-26604156 1.0000 100 chr1:229221467-229221967 1.0000 100 chr14:49861974-49862474 1.0000 100 chr1:125179935-125180435 1.0000 100 chr16:1271739-1272239 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.232 C 0.268 G 0.268 T 0.232 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.229 C 0.271 G 0.271 T 0.229 ******************************************************************************** ******************************************************************************** MOTIF AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 width = 47 sites = 34 llr = 1798 E-value = 7.7e-549 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 79828991aa919aa:aaa:aaa:aaa:9a91999189918991798 pos.-specific C 211111:1:::::::::::::::::::::::::::::1:11:1:1:1 probability G ::::::::::::1:::::::::::::::1::::::11::::1:::1: matrix T 11271:18::19:::a:::a:::a:::9:::8111811181::91:1 bits 2.1 *** * **** * 1.9 ** ************** * 1.7 * ******************** ** ** * 1.5 ** *********************** *** ** *** * Relative 1.3 * ******************************* ******* * Entropy 1.1 ** **************************************** ** (76.3 bits) 0.8 *********************************************** 0.6 *********************************************** 0.4 *********************************************** 0.2 *********************************************** 0.0 ----------------------------------------------- Multilevel AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------------- chr5:160008637-160009137 + 19 8.17e-31 tctcaaaaat aaataaataaataaataaataaataaataaataaataaataaataaa taGTGAAACG chr19:40567071-40567571 + 28 8.17e-31 actgtctcaa aaataaataaataaataaataaataaataaataaataaataaataaa GTCTTAAAGT chr10:114649192-11464969 + 13 8.17e-31 ctgtcAaaat aaataaataaataaataaataaataaataaataaataaataaataaa taaaggtgtt chr19:37918640-37919140 + 32 8.17e-31 ctcggtctca aaataaataaataaataaataaataaataaataaataaataaataaa CAAACTGCTG chr19:40103561-40104061 + 17 8.17e-31 ctctgtctca aaataaataaataaataaataaataaataaataaataaataaataaa aagaaagaaa chr15:101945849-10194634 - 27 8.17e-31 GTCAAAAGTA AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA ATAAATTATT chr17:58822099-58822599 - 32 8.17e-31 ACTCGTCAAA AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TAAAAATAAA chr12:42215708-42216208 + 20 8.17e-31 ccagctcaaa aaataaataaataaataaataaataaataaataaataaataaataaa taaaGCTACT chr5:139489856-139490356 - 29 8.17e-31 TCCATCTCAA AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA TGGTAGATCT chr1:50882375-50882875 + 27 8.17e-31 actctgtctt aaataaataaataaataaataaataaataaataaataaataaataaa tGTGTATGTA chr20:41059174-41059674 + 36 8.17e-31 AACTGCTAGA aaataaataaataaataaataaataaataaataaataaataaataaa taaGGTGGTG chr19:31332901-31333401 + 5 3.42e-30 ctca Caataaataaataaataaataaataaataaataaataaataaataaa tCCAGGGGTG chr16:30570500-30571000 - 22 5.05e-30 TCCGTCTCAA AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT AGCCCCTGCT chr5:126819227-126819727 - 32 5.05e-30 TCTGTCTCAA AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT ATGTAAAGTC chr16:46848717-46849217 + 25 2.33e-29 ctcgaaaaaa aataaaataaataaataaataaataaataaataaataaataaataaa ACAAAACCCC chrX:24143940-24144440 - 32 2.93e-29 GACCCTGTCT CAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA AACAAAAAAC chr21:36122970-36123470 + 18 3.48e-29 agcctgtctc aaaaaaataaataaataaataaataaataaataaataaataaataat aaaaaaataT chrX:72209977-72210477 + 22 4.14e-29 gactgtctct taaaaaataaataaataaataaataaataaataaataaataaataaa tggaaaaaag chr1:240985718-240986218 + 29 5.17e-29 TCCAGCTTTA TATtaaataaataaataaataaataaataaataaataaataaataaa tGGCTGGGTC chr6:90453827-90454327 - 26 8.31e-29 ACTCCATCTC AGATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA GTGCTTTGAG chr16:21514951-21515451 + 26 1.07e-28 ttccatctca aaataaataaataaataaataaataaataaataaataaataaaataa atCACTTTCT chr1:27181861-27182361 - 34 1.56e-28 AACTCCATCT CAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCAA TCCTTTCATG chr19:35881945-35882445 + 20 1.06e-27 aataaaaata aaaataaaaaataaataaataaataaataaataaataaataaataaa Atccaagtga chr5:32157751-32158251 + 28 2.19e-27 ctctgtctca aaataaataaataaataaataaataaataaataaataaataaaATac acacacacac chr1:225654696-225655196 + 23 1.83e-25 agcgagactc catctaaaaaataaataaataaataaataaataaataaataaataaa ATTCCTGGTT chr5:32367231-32367731 + 19 1.48e-20 ataataaata aataaataaataaagtaaataaataaataaataaataaataactcac tgtagccttg chr5:34182285-34182785 + 2 1.83e-19 t aaataaataaataaataaataaataaataaataaaaaatCTGGGCCT CCCGCCAAGG chr16:46495-46995 + 21 4.41e-18 agaacaagac tctgtcttaaataaataaataaataaataaaataaataaataaataa ataGTATCTT chr8:21954402-21954902 + 24 2.51e-17 agagtgagac tccatctcaaaaaaataaataaataaatgaaataaataaataataaa tGTGCACCGG chr10:72580177-72580677 - 53 4.60e-17 A AATTAATTAATTAAATAAATAAATAAATCAGCAAAAGCTTGGATGAA AATCTTTCCA chr6:30162664-30163164 + 52 3.01e-16 TTCTTGCCTT CTCCCCGCTACAGTAAaaataaataaataaataaataaataaataaa ta chr17:38667059-38667559 + 2 4.35e-16 t aaataaataaataaataaataaataaataatagtacctacctcatgt tgtgtcctga chr19:32398396-32398896 + 4 2.07e-15 aat aaataaataaataaataaataaataaaAGAAGTTTGGCGACCATTGC ATTGACTTTT chr1:84510539-84511039 + 25 3.55e-14 acctaagtgt ctatcaacagatgaatgaatgagtaaagaaaatgtggtacaaataaa caatggagta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:160008637-160009137 8.2e-31 18_[+1]_35 chr19:40567071-40567571 8.2e-31 27_[+1]_26 chr10:114649192-11464969 8.2e-31 12_[+1]_41 chr19:37918640-37919140 8.2e-31 31_[+1]_22 chr19:40103561-40104061 8.2e-31 16_[+1]_37 chr15:101945849-10194634 8.2e-31 26_[-1]_27 chr17:58822099-58822599 8.2e-31 31_[-1]_22 chr12:42215708-42216208 8.2e-31 19_[+1]_34 chr5:139489856-139490356 8.2e-31 28_[-1]_25 chr1:50882375-50882875 8.2e-31 26_[+1]_27 chr20:41059174-41059674 8.2e-31 35_[+1]_18 chr19:31332901-31333401 3.4e-30 4_[+1]_49 chr16:30570500-30571000 5.1e-30 21_[-1]_32 chr5:126819227-126819727 5.1e-30 31_[-1]_22 chr16:46848717-46849217 2.3e-29 24_[+1]_29 chrX:24143940-24144440 2.9e-29 31_[-1]_22 chr21:36122970-36123470 3.5e-29 17_[+1]_36 chrX:72209977-72210477 4.1e-29 21_[+1]_32 chr1:240985718-240986218 5.2e-29 28_[+1]_25 chr6:90453827-90454327 8.3e-29 25_[-1]_28 chr16:21514951-21515451 1.1e-28 25_[+1]_28 chr1:27181861-27182361 1.6e-28 33_[-1]_20 chr19:35881945-35882445 1.1e-27 19_[+1]_34 chr5:32157751-32158251 2.2e-27 27_[+1]_26 chr1:225654696-225655196 1.8e-25 22_[+1]_31 chr5:32367231-32367731 1.5e-20 18_[+1]_35 chr5:34182285-34182785 1.8e-19 1_[+1]_52 chr16:46495-46995 4.4e-18 20_[+1]_33 chr8:21954402-21954902 2.5e-17 23_[+1]_30 chr10:72580177-72580677 4.6e-17 52_[-1]_1 chr6:30162664-30163164 3e-16 51_[+1]_2 chr17:38667059-38667559 4.4e-16 1_[+1]_52 chr19:32398396-32398896 2.1e-15 3_[+1]_50 chr1:84510539-84511039 3.6e-14 24_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA width=47 seqs=34 chr5:160008637-160009137 ( 19) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40567071-40567571 ( 28) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr10:114649192-11464969 ( 13) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:37918640-37919140 ( 32) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40103561-40104061 ( 17) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr15:101945849-10194634 ( 27) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr17:58822099-58822599 ( 32) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr12:42215708-42216208 ( 20) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:139489856-139490356 ( 29) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:50882375-50882875 ( 27) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr20:41059174-41059674 ( 36) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:31332901-31333401 ( 5) CAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr16:30570500-30571000 ( 22) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT 1 chr5:126819227-126819727 ( 32) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT 1 chr16:46848717-46849217 ( 25) AATAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chrX:24143940-24144440 ( 32) CAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr21:36122970-36123470 ( 18) AAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAT 1 chrX:72209977-72210477 ( 22) TAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:240985718-240986218 ( 29) TATTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr6:90453827-90454327 ( 26) AGATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr16:21514951-21515451 ( 26) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAATAA 1 chr1:27181861-27182361 ( 34) CAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCAA 1 chr19:35881945-35882445 ( 20) AAAATAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:32157751-32158251 ( 28) AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAATAC 1 chr1:225654696-225655196 ( 23) CATCTAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:32367231-32367731 ( 19) AATAAATAAATAAAGTAAATAAATAAATAAATAAATAAATAACTCAC 1 chr5:34182285-34182785 ( 2) AAATAAATAAATAAATAAATAAATAAATAAATAAAAAATCTGGGCCT 1 chr16:46495-46995 ( 21) TCTGTCTTAAATAAATAAATAAATAAATAAAATAAATAAATAAATAA 1 chr8:21954402-21954902 ( 24) TCCATCTCAAAAAAATAAATAAATAAATGAAATAAATAAATAATAAA 1 chr10:72580177-72580677 ( 53) AATTAATTAATTAAATAAATAAATAAATCAGCAAAAGCTTGGATGAA 1 chr6:30162664-30163164 ( 52) CTCCCCGCTACAGTAAAAATAAATAAATAAATAAATAAATAAATAAA 1 chr17:38667059-38667559 ( 2) AAATAAATAAATAAATAAATAAATAAATAATAGTACCTACCTCATGT 1 chr19:32398396-32398896 ( 4) AAATAAATAAATAAATAAATAAATAAAAGAAGTTTGGCGACCATTGC 1 chr1:84510539-84511039 ( 25) CTATCAACAGATGAATGAATGAGTAAAGAAAATGTGGTACAAATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 47 n= 32400 bayes= 9.96434 E= 7.7e-549 162 -62 -1173 -96 189 -220 -320 -196 174 -220 -1173 -38 -16 -220 -320 162 184 -220 -1173 -96 199 -162 -1173 -1173 189 -1173 -320 -96 -138 -162 -1173 184 208 -1173 -1173 -296 208 -1173 -320 -1173 199 -320 -1173 -196 -138 -1173 -1173 199 204 -1173 -220 -1173 208 -1173 -1173 -296 208 -1173 -320 -1173 -296 -1173 -1173 208 208 -1173 -320 -1173 212 -1173 -1173 -1173 212 -1173 -1173 -1173 -1173 -1173 -1173 212 208 -1173 -320 -1173 212 -1173 -1173 -1173 208 -1173 -320 -1173 -1173 -1173 -1173 212 212 -1173 -1173 -1173 212 -1173 -1173 -1173 212 -1173 -1173 -1173 -296 -1173 -320 204 199 -320 -220 -1173 212 -1173 -1173 -1173 204 -1173 -320 -296 -96 -320 -320 184 189 -1173 -320 -96 199 -1173 -320 -196 204 -1173 -1173 -196 -96 -320 -220 179 184 -320 -162 -196 194 -220 -1173 -196 199 -1173 -320 -196 -138 -162 -1173 184 184 -220 -320 -138 194 -320 -220 -296 199 -220 -320 -1173 -96 -1173 -320 189 168 -162 -320 -64 199 -320 -220 -1173 174 -162 -1173 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 47 nsites= 34 E= 7.7e-549 0.705882 0.176471 0.000000 0.117647 0.852941 0.058824 0.029412 0.058824 0.764706 0.058824 0.000000 0.176471 0.205882 0.058824 0.029412 0.705882 0.823529 0.058824 0.000000 0.117647 0.911765 0.088235 0.000000 0.000000 0.852941 0.000000 0.029412 0.117647 0.088235 0.088235 0.000000 0.823529 0.970588 0.000000 0.000000 0.029412 0.970588 0.000000 0.029412 0.000000 0.911765 0.029412 0.000000 0.058824 0.088235 0.000000 0.000000 0.911765 0.941176 0.000000 0.058824 0.000000 0.970588 0.000000 0.000000 0.029412 0.970588 0.000000 0.029412 0.000000 0.029412 0.000000 0.000000 0.970588 0.970588 0.000000 0.029412 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.970588 0.000000 0.029412 0.000000 1.000000 0.000000 0.000000 0.000000 0.970588 0.000000 0.029412 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.029412 0.000000 0.029412 0.941176 0.911765 0.029412 0.058824 0.000000 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.029412 0.029412 0.117647 0.029412 0.029412 0.823529 0.852941 0.000000 0.029412 0.117647 0.911765 0.000000 0.029412 0.058824 0.941176 0.000000 0.000000 0.058824 0.117647 0.029412 0.058824 0.794118 0.823529 0.029412 0.088235 0.058824 0.882353 0.058824 0.000000 0.058824 0.911765 0.000000 0.029412 0.058824 0.088235 0.088235 0.000000 0.823529 0.823529 0.058824 0.029412 0.088235 0.882353 0.029412 0.058824 0.029412 0.911765 0.058824 0.029412 0.000000 0.117647 0.000000 0.029412 0.852941 0.735294 0.088235 0.029412 0.147059 0.911765 0.029412 0.058824 0.000000 0.764706 0.088235 0.000000 0.147059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 regular expression -------------------------------------------------------------------------------- AAA[TA]AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA -------------------------------------------------------------------------------- Time 406.25 secs. ******************************************************************************** ******************************************************************************** MOTIF CYTGGCACMBTGCCAR MEME-2 width = 16 sites = 90 llr = 1220 E-value = 5.9e-177 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::61321:::a6 pos.-specific C 64:::a16431:aa:: probability G 2::aa::2131a:::4 matrix T 16a:::31127::::: bits 2.1 * 1.9 ** ** * 1.7 **** **** 1.5 **** **** Relative 1.3 **** **** Entropy 1.1 ***** **** (19.6 bits) 0.8 ****** ****** 0.6 ****** ****** 0.4 ******* ****** 0.2 ********* ****** 0.0 ---------------- Multilevel CTTGGCACCGTGCCAA consensus GC TGAC G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr2:165825017-165825517 + 35 5.68e-10 ttgattgtgg cttggcacagtgccaa actcaaggtt chr5:41747187-41747687 - 47 5.68e-10 TTATCTAACA CTTGGCACAGTGCCAA CCCATACTCA chr12:120646975-12064747 + 49 5.68e-10 tttctagatg cttggcacagtgccaa gccctttgca chr16:77896328-77896828 - 60 1.14e-09 GTTCTCCTCC CTTGGCACCTTGCCAA GAGTCCCTGA chr1:45875975-45876475 - 1 1.62e-09 TTAAACCATT CTTGGCACACTGCCAA chr19:48539554-48540054 - 58 2.92e-09 ATACTCAGTG CCTGGCACAGTGCCAA GAGATCTGCA chr1:181127036-181127536 - 44 4.12e-09 GTCTAGGCTG CTTGGCACAGTGCCAG GTGCTCCATA chr14:95291736-95292236 - 63 4.12e-09 CACGTCAACC CTTGGCACAGTGCCAG GAACACAGTC chr2:63064129-63064629 + 65 4.12e-09 agtcttaggc cttggcacagtgccag acacaaggta chr16:22279934-22280434 - 56 5.67e-09 TCTAGCCAGT CTTGGCACCTTGCCAG GAGATACAGA chr22:46053537-46054037 + 57 9.73e-09 TCCCAGGCAG CCTGGCACCGTGCCAG GCTCGCCGCC chr5:177404101-177404601 - 25 1.22e-08 AGTACTGCGA CCTGGCACAGTGCCAG ACCCCAACCC chr6:31777116-31777616 + 55 1.22e-08 GTGACTCAGG CCTGGCACAGTGCCAG GGACAGACCC chr1:230145418-230145918 + 37 1.47e-08 AGCCACCCAC CTTGGCATAGTGCCAA TGGGGGCCTT chr16:75054159-75054659 + 27 1.47e-08 ACTTTGCCTC CCTGGCACCCTGCCAG TTCTGTCTGC chr2:178484621-178485121 - 32 1.89e-08 CTATCACAGA CTTGGCTCCATGCCAA AGCTGACGAC chr15:89383559-89384059 + 69 2.22e-08 GGCCTCCTGC CCTGGCTCCCTGCCAA GGCTGAGGGC chr18:31197683-31198183 + 67 2.56e-08 TCACTGTATA TTTGGCACACTGCCAA CTGAAACGTA chr12:105410023-10541052 + 32 2.56e-08 TGCTCTTATT CTTGGCTCCCTGCCAG TCATCACACA chr17:38753682-38754182 - 1 2.56e-08 CTCCCATAGA TTTGGCACATTGCCAA chr12:65624477-65624977 - 50 2.56e-08 AGAACTAAAA CTTGGCAAAGTGCCAA AAAGTGAAAA chr18:45755948-45756448 - 41 3.05e-08 AGCCAGGTTT CCTGGCACTGTGCCAA CTTTTCTCTG chr16:1271739-1272239 + 31 4.17e-08 CGTCTGCATG GTTGGCACCCTGCCAG CTGGTCTCTG chr1:110176228-110176728 + 30 5.05e-08 CTGCTTCTGC CTTGGCTCCATGCCAG ATGTGTGGCA chr5:109468672-109469172 - 41 5.79e-08 CCATGACAAC GTTGGCTCCCTGCCAA GAACCACAGT chr10:92839037-92839537 + 46 5.79e-08 TGTAGATGTG CCTGGCTCCTTGCCAG CTCCTTCCGC chr17:13887990-13888490 - 54 5.79e-08 TGGAGAAAAA CTTGGCCCAGTGCCAA GCCCATGTGC chr1:234523520-234524020 - 52 6.71e-08 GGCGAGGGAA CCTGGCAGCCTGCCAG CCTGTAAAAA chr6:80132937-80133437 - 31 7.74e-08 CAGTTCAAGT GCTGGCACAATGCCAA CAGGGATGTT chr12:121404701-12140520 + 20 7.74e-08 ATTTGAAAAT CCTGGCACTGTGCCAG AAAGAGAGCT chr21:34543869-34544369 + 36 7.74e-08 agctgcctta cttggcaacttgccag aattcttgcc chr10:87586170-87586670 + 45 8.48e-08 ccctaggtaa tttggcagcctgccaa atCCTACTTA chr12:65327012-65327512 + 57 8.48e-08 CCATGAGGGA CTTGGCACTATGCCAG GATGCTGAAA chr6:35181825-35182325 - 26 9.75e-08 CAGCAAGGAG CCTGGCACGTTGCCAG CGCTCAAGAA chr13:98507148-98507648 + 38 9.75e-08 CCTGCGGGCT CCTGGCACAGGGCCAA CGCTTCACAC chr10:18607475-18607975 - 53 1.12e-07 AGCCTGTATT CTTGGCCCCATGCCAA TGCTCCAGAT chr7:112572620-112573120 - 72 1.12e-07 TACTATGTAC CTTGGCATGTTGCCAA TATTGTCAGG chr7:20514322-20514822 - 58 1.28e-07 CAGCTCTCCA GCTGGCTCATTGCCAA CTCTCTGCCA chr1:47469293-47469793 - 62 1.28e-07 TGACCTAGTA CCTGGCAAAGTGCCAG AAACAGACTA chr1:184029111-184029611 + 25 1.28e-07 taggtcactc gctggcagcttgccaa gcctgctggt chr13:112849467-11284996 - 42 1.45e-07 CCACTGAATC CCTGGCACACAGCCAA AACTCAACAA chr6:118660193-118660693 + 32 1.63e-07 AGCTGGGGGA GTTGGCAGATTGCCAG ATAAGGGGCC chr19:10976827-10977327 + 66 1.78e-07 gaaCAAAATT CTTGGCAGCCGGCCAA ATCTGTGTGC chr5:125198481-125198981 - 44 1.78e-07 ACAGAGATTG GTTGGCTGCCTGCCAA AAGTTCAGTG chr1:78620097-78620597 - 8 2.01e-07 AAAAAACTCA GCTGGCAGCATGCCAA CTGCCAC chr10:102766786-10276728 + 21 2.01e-07 TCATGTAATT CTTGGCTACTTGCCAG TATGGTTGGG chr8:17495802-17496302 + 39 2.25e-07 GCAATACAAA TCTGGCACTTTGCCAA AGTTATTACT chr4:186216633-186217133 - 75 2.25e-07 TTACTAAACA CTTGGCTTTGTGCCAA TCAAAATGGA chr2:232473367-232473867 + 8 2.52e-07 tctggca cttggcacttggccaa actcctttca chr5:170755621-170756121 - 41 2.52e-07 CCAGGCTTTT CTTGGCAAGATGCCAA TTGGCCAAAC chr5:10601224-10601724 + 31 2.85e-07 cgaggctcaa cctggctgggtgccaa ctcctcccag chr2:168434076-168434576 + 32 2.85e-07 ACAAGACAAG CTTGGCATATGGCCAA GTTCCCTGGC chr1:153880957-153881457 - 31 3.11e-07 CTGACTGAGT GTTGGCATCATGCCAG GGGCTGCAAA chr19:41501343-41501843 - 22 3.11e-07 AGATGGTTCC TTTGGCTCTCTGCCAA TACAGGGTGA chr14:69716075-69716575 - 18 3.78e-07 CAACATGAAT CCTGGCATGCTGCCAG CTATCTTTTG chr21:31397402-31397902 + 45 3.78e-07 GGCCATCCTT CCTGGCTTGGTGCCAA CACGTTATGA chr9:14209260-14209760 - 41 4.17e-07 AATGGACTGT GCTGGCCCCCTGCCAA AACCTTTAAG chr15:72968490-72968990 - 5 4.59e-07 TGACGCCCAA CTTGGCTGCCAGCCAA AAGG chr17:73474213-73474713 - 70 4.59e-07 CCAGAGCGAA CTTGGCACGTGGCCAG TTGTGAGTCA chr1:80054136-80054636 + 59 5.11e-07 tgagctcatt cttggctcggagccaa tattatctgt chr5:37717493-37717993 - 54 5.55e-07 ATAGCAGAGA GCTGGCTACCTGCCAA ACCAAACAAT chr4:88456709-88457209 - 54 6.08e-07 ATGAGAGTGA CTTGGCAGGCGGCCAA AGGCAACAGG chr1:43836449-43836949 - 38 6.08e-07 CTGAGTGAGC CCTGGCTGGCTGCCAG TTCTGAGTCC chr17:29042484-29042984 + 54 6.65e-07 GGGTCTTATT CTGGGCATCGTGCCAA GTTCTTAGCG chr5:124649778-124650278 - 76 7.88e-07 CTAGTTTAT ATTGGCTGCTTGCCAA ACGAAAGCAA chr1:229221467-229221967 - 31 8.60e-07 GGAACAAATA GTTGGCCTATTGCCAA AGAAAATGTG chr7:132255831-132256331 + 8 8.60e-07 AAATCAT GCTGGCTCCTAGCCAA GTACAAGAGG chr21:16420002-16420502 + 70 8.60e-07 TGCACATGAT TTTGGCACTTGGCCAA AATCAACTTC chr6:15956230-15956730 - 73 9.32e-07 AATGCAACCC CCTGGAAGCATGCCAA TGTATACAAC chr11:114159929-11416042 + 52 1.02e-06 CCAGGCCAGG CCTGGCTGCGAGCCAG ACTTGTGGGT chr19:30870835-30871335 - 30 1.02e-06 AGAGTGTACT GCTGGCACCACGCCAA ATGCATTCCT chr15:70062320-70062820 - 24 1.17e-06 TACTTAGTTT TTTGGCCGCCTGCCAG CCAGAGGCGG chr16:4944780-4945280 + 57 1.17e-06 GCCCGGGCCC CCTGGCAGAATGCCAC TTCTCCCTGC chr10:21724657-21725157 + 85 1.17e-06 AGTTAGTAGA GCTGGCTTGCTGCCAA chr7:100479077-100479577 - 58 1.17e-06 CTGTGGCAGG CCTGGCCCCGGGCCAG CTGGCGGGAA chr1:234724154-234724654 + 42 1.27e-06 TTCTTTGTAA CTTGGCTGCCCGCCAG AGGCCTCATT chr5:81736020-81736520 - 41 1.37e-06 AAACAGGGCT TTTGGCATAGCGCCAA TTTTGTGCTT chr5:77168825-77169325 - 47 1.60e-06 AGTGACAGGA GCTGGCACTGCGCCAA CTCTCAGGGT chr1:232620479-232620979 + 31 1.71e-06 AGCTATTCTG ACTGGCAAACTGCCAG TTTTAAACAA chr2:160039517-160040017 - 56 1.96e-06 GCTTCCTCTG CTTGACAGCCTGCCAG ATTCCAGCCC chr5:146213388-146213888 - 58 2.24e-06 GTCCTACACC TTTGGCCCCAAGCCAA AAAACACTAC chr8:16825877-16826377 + 78 2.40e-06 GACCTAATTT CTGGGCACCGTGCCAC ATTTCTA chr5:140295382-140295882 + 43 2.87e-06 ACTAAAATGT GCTGGCAACACGCCAA AAGACTGGAT chr13:100176717-10017721 + 21 3.23e-06 AACTGTTGTT TTTGGATGCTTGCCAG ATAAAAGCCC chr5:172437467-172437967 + 40 3.63e-06 TAAGTGAATG CTTGGATTAGGGCCAA AATACAAGTG chr2:158953799-158954299 + 17 3.84e-06 CCAAGGTCTC TTGGGCAAACTGCCAG CAGGTCCCTG chr1:160260926-160261426 + 22 4.27e-06 TTCAACCAGA GCTGGAACAAAGCCAA GAACAACACT chr17:58391399-58391899 - 64 4.27e-06 GGTAAGAATT TCGGGCACCTGGCCAA GATACACATT chr8:37393034-37393534 + 24 4.76e-06 TGTGAAGTTT CTTGGCCCTGTGCTAA ATCCCCTTTC chr2:235050901-235051401 + 68 1.05e-05 CGTCATCCTG ACTGGCTCAGAGCCAC ACGCTAACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:165825017-165825517 5.7e-10 34_[+2]_50 chr5:41747187-41747687 5.7e-10 46_[-2]_38 chr12:120646975-12064747 5.7e-10 48_[+2]_36 chr16:77896328-77896828 1.1e-09 59_[-2]_25 chr1:45875975-45876475 1.6e-09 [-2]_84 chr19:48539554-48540054 2.9e-09 57_[-2]_27 chr1:181127036-181127536 4.1e-09 43_[-2]_41 chr14:95291736-95292236 4.1e-09 62_[-2]_22 chr2:63064129-63064629 4.1e-09 64_[+2]_20 chr16:22279934-22280434 5.7e-09 55_[-2]_29 chr22:46053537-46054037 9.7e-09 56_[+2]_28 chr5:177404101-177404601 1.2e-08 24_[-2]_60 chr6:31777116-31777616 1.2e-08 54_[+2]_30 chr1:230145418-230145918 1.5e-08 36_[+2]_48 chr16:75054159-75054659 1.5e-08 26_[+2]_58 chr2:178484621-178485121 1.9e-08 31_[-2]_53 chr15:89383559-89384059 2.2e-08 68_[+2]_16 chr18:31197683-31198183 2.6e-08 66_[+2]_18 chr12:105410023-10541052 2.6e-08 31_[+2]_53 chr17:38753682-38754182 2.6e-08 [-2]_84 chr12:65624477-65624977 2.6e-08 49_[-2]_35 chr18:45755948-45756448 3e-08 40_[-2]_44 chr16:1271739-1272239 4.2e-08 30_[+2]_54 chr1:110176228-110176728 5e-08 29_[+2]_55 chr5:109468672-109469172 5.8e-08 40_[-2]_44 chr10:92839037-92839537 5.8e-08 45_[+2]_39 chr17:13887990-13888490 5.8e-08 53_[-2]_31 chr1:234523520-234524020 6.7e-08 51_[-2]_33 chr6:80132937-80133437 7.7e-08 30_[-2]_54 chr12:121404701-12140520 7.7e-08 19_[+2]_65 chr21:34543869-34544369 7.7e-08 35_[+2]_49 chr10:87586170-87586670 8.5e-08 44_[+2]_40 chr12:65327012-65327512 8.5e-08 56_[+2]_28 chr6:35181825-35182325 9.7e-08 25_[-2]_59 chr13:98507148-98507648 9.7e-08 37_[+2]_47 chr10:18607475-18607975 1.1e-07 52_[-2]_32 chr7:112572620-112573120 1.1e-07 71_[-2]_13 chr7:20514322-20514822 1.3e-07 57_[-2]_27 chr1:47469293-47469793 1.3e-07 61_[-2]_23 chr1:184029111-184029611 1.3e-07 24_[+2]_60 chr13:112849467-11284996 1.5e-07 41_[-2]_43 chr6:118660193-118660693 1.6e-07 31_[+2]_53 chr19:10976827-10977327 1.8e-07 65_[+2]_19 chr5:125198481-125198981 1.8e-07 43_[-2]_41 chr1:78620097-78620597 2e-07 7_[-2]_77 chr10:102766786-10276728 2e-07 20_[+2]_64 chr8:17495802-17496302 2.2e-07 38_[+2]_46 chr4:186216633-186217133 2.2e-07 74_[-2]_10 chr2:232473367-232473867 2.5e-07 7_[+2]_77 chr5:170755621-170756121 2.5e-07 40_[-2]_44 chr5:10601224-10601724 2.8e-07 30_[+2]_54 chr2:168434076-168434576 2.8e-07 31_[+2]_53 chr1:153880957-153881457 3.1e-07 30_[-2]_54 chr19:41501343-41501843 3.1e-07 21_[-2]_63 chr14:69716075-69716575 3.8e-07 17_[-2]_67 chr21:31397402-31397902 3.8e-07 44_[+2]_40 chr9:14209260-14209760 4.2e-07 40_[-2]_44 chr15:72968490-72968990 4.6e-07 4_[-2]_80 chr17:73474213-73474713 4.6e-07 69_[-2]_15 chr1:80054136-80054636 5.1e-07 58_[+2]_26 chr5:37717493-37717993 5.6e-07 53_[-2]_31 chr4:88456709-88457209 6.1e-07 53_[-2]_31 chr1:43836449-43836949 6.1e-07 37_[-2]_47 chr17:29042484-29042984 6.7e-07 53_[+2]_31 chr5:124649778-124650278 7.9e-07 75_[-2]_9 chr1:229221467-229221967 8.6e-07 30_[-2]_54 chr7:132255831-132256331 8.6e-07 7_[+2]_77 chr21:16420002-16420502 8.6e-07 69_[+2]_15 chr6:15956230-15956730 9.3e-07 72_[-2]_12 chr11:114159929-11416042 1e-06 51_[+2]_33 chr19:30870835-30871335 1e-06 29_[-2]_55 chr15:70062320-70062820 1.2e-06 23_[-2]_61 chr16:4944780-4945280 1.2e-06 56_[+2]_28 chr10:21724657-21725157 1.2e-06 84_[+2] chr7:100479077-100479577 1.2e-06 57_[-2]_27 chr1:234724154-234724654 1.3e-06 41_[+2]_43 chr5:81736020-81736520 1.4e-06 40_[-2]_44 chr5:77168825-77169325 1.6e-06 46_[-2]_38 chr1:232620479-232620979 1.7e-06 30_[+2]_54 chr2:160039517-160040017 2e-06 55_[-2]_29 chr5:146213388-146213888 2.2e-06 57_[-2]_27 chr8:16825877-16826377 2.4e-06 77_[+2]_7 chr5:140295382-140295882 2.9e-06 42_[+2]_42 chr13:100176717-10017721 3.2e-06 20_[+2]_64 chr5:172437467-172437967 3.6e-06 39_[+2]_45 chr2:158953799-158954299 3.8e-06 16_[+2]_68 chr1:160260926-160261426 4.3e-06 21_[+2]_63 chr17:58391399-58391899 4.3e-06 63_[-2]_21 chr8:37393034-37393534 4.8e-06 23_[+2]_61 chr2:235050901-235051401 1e-05 67_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTGGCACMBTGCCAR width=16 seqs=90 chr2:165825017-165825517 ( 35) CTTGGCACAGTGCCAA 1 chr5:41747187-41747687 ( 47) CTTGGCACAGTGCCAA 1 chr12:120646975-12064747 ( 49) CTTGGCACAGTGCCAA 1 chr16:77896328-77896828 ( 60) CTTGGCACCTTGCCAA 1 chr1:45875975-45876475 ( 1) CTTGGCACACTGCCAA 1 chr19:48539554-48540054 ( 58) CCTGGCACAGTGCCAA 1 chr1:181127036-181127536 ( 44) CTTGGCACAGTGCCAG 1 chr14:95291736-95292236 ( 63) CTTGGCACAGTGCCAG 1 chr2:63064129-63064629 ( 65) CTTGGCACAGTGCCAG 1 chr16:22279934-22280434 ( 56) CTTGGCACCTTGCCAG 1 chr22:46053537-46054037 ( 57) CCTGGCACCGTGCCAG 1 chr5:177404101-177404601 ( 25) CCTGGCACAGTGCCAG 1 chr6:31777116-31777616 ( 55) CCTGGCACAGTGCCAG 1 chr1:230145418-230145918 ( 37) CTTGGCATAGTGCCAA 1 chr16:75054159-75054659 ( 27) CCTGGCACCCTGCCAG 1 chr2:178484621-178485121 ( 32) CTTGGCTCCATGCCAA 1 chr15:89383559-89384059 ( 69) CCTGGCTCCCTGCCAA 1 chr18:31197683-31198183 ( 67) TTTGGCACACTGCCAA 1 chr12:105410023-10541052 ( 32) CTTGGCTCCCTGCCAG 1 chr17:38753682-38754182 ( 1) TTTGGCACATTGCCAA 1 chr12:65624477-65624977 ( 50) CTTGGCAAAGTGCCAA 1 chr18:45755948-45756448 ( 41) CCTGGCACTGTGCCAA 1 chr16:1271739-1272239 ( 31) GTTGGCACCCTGCCAG 1 chr1:110176228-110176728 ( 30) CTTGGCTCCATGCCAG 1 chr5:109468672-109469172 ( 41) GTTGGCTCCCTGCCAA 1 chr10:92839037-92839537 ( 46) CCTGGCTCCTTGCCAG 1 chr17:13887990-13888490 ( 54) CTTGGCCCAGTGCCAA 1 chr1:234523520-234524020 ( 52) CCTGGCAGCCTGCCAG 1 chr6:80132937-80133437 ( 31) GCTGGCACAATGCCAA 1 chr12:121404701-12140520 ( 20) CCTGGCACTGTGCCAG 1 chr21:34543869-34544369 ( 36) CTTGGCAACTTGCCAG 1 chr10:87586170-87586670 ( 45) TTTGGCAGCCTGCCAA 1 chr12:65327012-65327512 ( 57) CTTGGCACTATGCCAG 1 chr6:35181825-35182325 ( 26) CCTGGCACGTTGCCAG 1 chr13:98507148-98507648 ( 38) CCTGGCACAGGGCCAA 1 chr10:18607475-18607975 ( 53) CTTGGCCCCATGCCAA 1 chr7:112572620-112573120 ( 72) CTTGGCATGTTGCCAA 1 chr7:20514322-20514822 ( 58) GCTGGCTCATTGCCAA 1 chr1:47469293-47469793 ( 62) CCTGGCAAAGTGCCAG 1 chr1:184029111-184029611 ( 25) GCTGGCAGCTTGCCAA 1 chr13:112849467-11284996 ( 42) CCTGGCACACAGCCAA 1 chr6:118660193-118660693 ( 32) GTTGGCAGATTGCCAG 1 chr19:10976827-10977327 ( 66) CTTGGCAGCCGGCCAA 1 chr5:125198481-125198981 ( 44) GTTGGCTGCCTGCCAA 1 chr1:78620097-78620597 ( 8) GCTGGCAGCATGCCAA 1 chr10:102766786-10276728 ( 21) CTTGGCTACTTGCCAG 1 chr8:17495802-17496302 ( 39) TCTGGCACTTTGCCAA 1 chr4:186216633-186217133 ( 75) CTTGGCTTTGTGCCAA 1 chr2:232473367-232473867 ( 8) CTTGGCACTTGGCCAA 1 chr5:170755621-170756121 ( 41) CTTGGCAAGATGCCAA 1 chr5:10601224-10601724 ( 31) CCTGGCTGGGTGCCAA 1 chr2:168434076-168434576 ( 32) CTTGGCATATGGCCAA 1 chr1:153880957-153881457 ( 31) GTTGGCATCATGCCAG 1 chr19:41501343-41501843 ( 22) TTTGGCTCTCTGCCAA 1 chr14:69716075-69716575 ( 18) CCTGGCATGCTGCCAG 1 chr21:31397402-31397902 ( 45) CCTGGCTTGGTGCCAA 1 chr9:14209260-14209760 ( 41) GCTGGCCCCCTGCCAA 1 chr15:72968490-72968990 ( 5) CTTGGCTGCCAGCCAA 1 chr17:73474213-73474713 ( 70) CTTGGCACGTGGCCAG 1 chr1:80054136-80054636 ( 59) CTTGGCTCGGAGCCAA 1 chr5:37717493-37717993 ( 54) GCTGGCTACCTGCCAA 1 chr4:88456709-88457209 ( 54) CTTGGCAGGCGGCCAA 1 chr1:43836449-43836949 ( 38) CCTGGCTGGCTGCCAG 1 chr17:29042484-29042984 ( 54) CTGGGCATCGTGCCAA 1 chr5:124649778-124650278 ( 76) ATTGGCTGCTTGCCAA 1 chr1:229221467-229221967 ( 31) GTTGGCCTATTGCCAA 1 chr7:132255831-132256331 ( 8) GCTGGCTCCTAGCCAA 1 chr21:16420002-16420502 ( 70) TTTGGCACTTGGCCAA 1 chr6:15956230-15956730 ( 73) CCTGGAAGCATGCCAA 1 chr11:114159929-11416042 ( 52) CCTGGCTGCGAGCCAG 1 chr19:30870835-30871335 ( 30) GCTGGCACCACGCCAA 1 chr15:70062320-70062820 ( 24) TTTGGCCGCCTGCCAG 1 chr16:4944780-4945280 ( 57) CCTGGCAGAATGCCAC 1 chr10:21724657-21725157 ( 85) GCTGGCTTGCTGCCAA 1 chr7:100479077-100479577 ( 58) CCTGGCCCCGGGCCAG 1 chr1:234724154-234724654 ( 42) CTTGGCTGCCCGCCAG 1 chr5:81736020-81736520 ( 41) TTTGGCATAGCGCCAA 1 chr5:77168825-77169325 ( 47) GCTGGCACTGCGCCAA 1 chr1:232620479-232620979 ( 31) ACTGGCAAACTGCCAG 1 chr2:160039517-160040017 ( 56) CTTGACAGCCTGCCAG 1 chr5:146213388-146213888 ( 58) TTTGGCCCCAAGCCAA 1 chr8:16825877-16826377 ( 78) CTGGGCACCGTGCCAC 1 chr5:140295382-140295882 ( 43) GCTGGCAACACGCCAA 1 chr13:100176717-10017721 ( 21) TTTGGATGCTTGCCAG 1 chr5:172437467-172437967 ( 40) CTTGGATTAGGGCCAA 1 chr2:158953799-158954299 ( 17) TTGGGCAAACTGCCAG 1 chr1:160260926-160261426 ( 22) GCTGGAACAAAGCCAA 1 chr17:58391399-58391899 ( 64) TCGGGCACCTGGCCAA 1 chr8:37393034-37393534 ( 24) CTTGGCCCTGTGCTAA 1 chr2:235050901-235051401 ( 68) ACTGGCTCAGAGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.1907 E= 5.9e-177 -278 123 -44 -78 -1314 64 -1314 133 -1314 -1314 -261 206 -1314 -1314 189 -1314 -436 -1314 187 -1314 -237 182 -1314 -1314 146 -161 -1314 28 -120 104 -36 -78 54 68 -115 -105 -56 4 30 2 -137 -228 -128 170 -1314 -1314 189 -1314 -1314 189 -1314 -1314 -1314 187 -1314 -436 212 -1314 -1314 -1314 141 -302 39 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 90 E= 5.9e-177 0.033333 0.633333 0.200000 0.133333 0.000000 0.422222 0.000000 0.577778 0.000000 0.000000 0.044444 0.955556 0.000000 0.000000 1.000000 0.000000 0.011111 0.000000 0.988889 0.000000 0.044444 0.955556 0.000000 0.000000 0.633333 0.088889 0.000000 0.277778 0.100000 0.555556 0.211111 0.133333 0.333333 0.433333 0.122222 0.111111 0.155556 0.277778 0.333333 0.233333 0.088889 0.055556 0.111111 0.744444 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.988889 0.000000 0.011111 1.000000 0.000000 0.000000 0.000000 0.611111 0.033333 0.355556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCACMBTGCCAR MEME-2 regular expression -------------------------------------------------------------------------------- [CG][TC]TGGC[AT][CG][CA][GCT]TGCCA[AG] -------------------------------------------------------------------------------- Time 762.83 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGGTCCCGGGTTCGARTCCCG MEME-3 width = 22 sites = 27 llr = 472 E-value = 2.9e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 47:11:1:13::::3a41::12 pos.-specific C ::2::7661::::a::13a96: probability G 63891:3177a:::7:3:::17 matrix T ::::73:21::aa:::26:11: bits 2.1 ** * 1.9 **** * 1.7 **** * * 1.5 **** * * Relative 1.3 * * **** * ** Entropy 1.1 *** * ****** ** (25.2 bits) 0.8 ****** ******* ** * 0.6 ****** ********* *** * 0.4 **************** ***** 0.2 ********************** 0.0 ---------------------- Multilevel GAGGTCCCGGGTTCGAATCCCG consensus AG TGT A A GC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr16:3171831-3172331 + 58 9.70e-13 tcgggtgcga gaggtcccgggttcaaatcccg gacgagcccT chr7:128783234-128783734 + 57 9.70e-13 tagggtgcga gaggtcccgggttcaaatcccg gacgagcccT chr16:3189444-3189944 + 31 9.70e-13 tagggtgcga gaggtcccgggttcaaatcccg gacgagcccG chr17:8226764-8227264 - 36 1.07e-11 TAATAACGCC AAGGTCGCGGGTTCGAACCCCG TACGGGCCAG chr19:33176887-33177387 + 13 1.40e-10 tagtaaacag gagatcctgggttcgaatccca gcggtgcctc chr11:59550369-59550869 - 69 1.61e-10 TTACACGCAG AAGGTCCTGGGTTCGAGCCCCA GTGGAACCAT chr6:28795770-28796270 - 3 1.84e-10 TAGCATGCAC GAGGTCCTGGGTTCGATCCCCA GT chr17:39154279-39154779 - 21 6.68e-10 TGCAGATCAA GAGGTCCCCGGTTCAAATCCGG GTGCCCCCTC chr12:124927648-12492814 - 4 1.19e-09 TGAAGATCTA AAGGTCCCTGGTTCGATCCCGG GTT chr6:27280067-27280567 - 12 1.49e-09 TCACACGCGA AAGGTCCCCGGTTCGAAACCGG GCAGAAGCAA chr6:28943421-28943921 - 10 2.29e-09 CAGTCTCTTC GGGGGCGTGGGTTCGAATCCCA CCGCTGCCA chr16:71426300-71426800 + 35 3.43e-09 tcataatctg aaggtcctgagttcgagcctca gagagggcaG chr13:44917710-44918210 - 26 5.07e-09 TTTTCACCCA GGCGGCCCGGGTTCGACTCCCG GTGTGGGAAC chr6:26575390-26575890 + 39 5.57e-09 aaggcatcct taggtcgctggttcgaatccgg ctcgaaggac chr17:8125543-8126043 + 43 6.69e-09 ctgccacgcg ggaggcccgggttcgattcccg gccaatgcac chr5:32530802-32531302 - 5 8.00e-09 GGCAGATCAC GAGGTCAGGAGTTCGAGACCAG CCTG chr17:75034232-75034732 - 8 8.75e-09 TCCTAAGCCA GGGATTGTGGGTTCGAGTCCCA CCTGGGG chr6:28817015-28817515 - 29 1.46e-08 TTGCATGTAT GAGGCCTCGGGTTCGATCCCCG ACACCTCCAA chr15:89334865-89335365 + 50 1.71e-08 ttcggatcag aagattgcaggttcgagtcctg ccgcggtcgA chr6:26537292-26537792 + 48 2.72e-08 tacggatcag aagattccaggttcgactcctg gctggctcgG chr17:49192302-49192802 + 67 4.19e-08 ctttgaatcc agcgatccgagttcaaatctcg gtgggacctc chr6:28941380-28941880 - 30 4.19e-08 CTCTGAATCC AGCGATCCGAGTTCAAATCTCG GTGGAACCTT chr6:26311545-26312045 - 11 4.19e-08 CTTTGAATCC AGCGATCCGAGTTCAAATCTCG GTGGGACCTA chr4:139555267-139555767 + 6 5.87e-08 TCCCG GACGGCGCACGTTCGAGTCCCG GGTCGGGAGA chr6:30907494-30907994 - 39 7.57e-08 CGAATCACCC GAGGTCAGGAGTTCGAGACCAT CCTGGCCAAC chr19:49817471-49817971 + 37 9.10e-08 cgaatcactt gaggtcaggagttcgagaacag cctggcccac chr1:161540073-161540573 + 11 1.69e-07 tgttaaccga aaggttggtggttcgatcccac ccagggacgG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:3171831-3172331 9.7e-13 57_[+3]_21 chr7:128783234-128783734 9.7e-13 56_[+3]_22 chr16:3189444-3189944 9.7e-13 30_[+3]_48 chr17:8226764-8227264 1.1e-11 35_[-3]_43 chr19:33176887-33177387 1.4e-10 12_[+3]_66 chr11:59550369-59550869 1.6e-10 68_[-3]_10 chr6:28795770-28796270 1.8e-10 2_[-3]_76 chr17:39154279-39154779 6.7e-10 20_[-3]_58 chr12:124927648-12492814 1.2e-09 3_[-3]_75 chr6:27280067-27280567 1.5e-09 11_[-3]_67 chr6:28943421-28943921 2.3e-09 9_[-3]_69 chr16:71426300-71426800 3.4e-09 34_[+3]_44 chr13:44917710-44918210 5.1e-09 25_[-3]_53 chr6:26575390-26575890 5.6e-09 38_[+3]_40 chr17:8125543-8126043 6.7e-09 42_[+3]_36 chr5:32530802-32531302 8e-09 4_[-3]_74 chr17:75034232-75034732 8.7e-09 7_[-3]_71 chr6:28817015-28817515 1.5e-08 28_[-3]_50 chr15:89334865-89335365 1.7e-08 49_[+3]_29 chr6:26537292-26537792 2.7e-08 47_[+3]_31 chr17:49192302-49192802 4.2e-08 66_[+3]_12 chr6:28941380-28941880 4.2e-08 29_[-3]_49 chr6:26311545-26312045 4.2e-08 10_[-3]_68 chr4:139555267-139555767 5.9e-08 5_[+3]_73 chr6:30907494-30907994 7.6e-08 38_[-3]_40 chr19:49817471-49817971 9.1e-08 36_[+3]_42 chr1:161540073-161540573 1.7e-07 10_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGGTCCCGGGTTCGARTCCCG width=22 seqs=27 chr16:3171831-3172331 ( 58) GAGGTCCCGGGTTCAAATCCCG 1 chr7:128783234-128783734 ( 57) GAGGTCCCGGGTTCAAATCCCG 1 chr16:3189444-3189944 ( 31) GAGGTCCCGGGTTCAAATCCCG 1 chr17:8226764-8227264 ( 36) AAGGTCGCGGGTTCGAACCCCG 1 chr19:33176887-33177387 ( 13) GAGATCCTGGGTTCGAATCCCA 1 chr11:59550369-59550869 ( 69) AAGGTCCTGGGTTCGAGCCCCA 1 chr6:28795770-28796270 ( 3) GAGGTCCTGGGTTCGATCCCCA 1 chr17:39154279-39154779 ( 21) GAGGTCCCCGGTTCAAATCCGG 1 chr12:124927648-12492814 ( 4) AAGGTCCCTGGTTCGATCCCGG 1 chr6:27280067-27280567 ( 12) AAGGTCCCCGGTTCGAAACCGG 1 chr6:28943421-28943921 ( 10) GGGGGCGTGGGTTCGAATCCCA 1 chr16:71426300-71426800 ( 35) AAGGTCCTGAGTTCGAGCCTCA 1 chr13:44917710-44918210 ( 26) GGCGGCCCGGGTTCGACTCCCG 1 chr6:26575390-26575890 ( 39) TAGGTCGCTGGTTCGAATCCGG 1 chr17:8125543-8126043 ( 43) GGAGGCCCGGGTTCGATTCCCG 1 chr5:32530802-32531302 ( 5) GAGGTCAGGAGTTCGAGACCAG 1 chr17:75034232-75034732 ( 8) GGGATTGTGGGTTCGAGTCCCA 1 chr6:28817015-28817515 ( 29) GAGGCCTCGGGTTCGATCCCCG 1 chr15:89334865-89335365 ( 50) AAGATTGCAGGTTCGAGTCCTG 1 chr6:26537292-26537792 ( 48) AAGATTCCAGGTTCGACTCCTG 1 chr17:49192302-49192802 ( 67) AGCGATCCGAGTTCAAATCTCG 1 chr6:28941380-28941880 ( 30) AGCGATCCGAGTTCAAATCTCG 1 chr6:26311545-26312045 ( 11) AGCGATCCGAGTTCAAATCTCG 1 chr4:139555267-139555767 ( 6) GACGGCGCACGTTCGAGTCCCG 1 chr6:30907494-30907994 ( 39) GAGGTCAGGAGTTCGAGACCAT 1 chr19:49817471-49817971 ( 37) GAGGTCAGGAGTTCGAGAACAG 1 chr1:161540073-161540573 ( 11) AAGGTTGGTGGTTCGATCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.3462 E= 2.9e-050 83 -1140 104 -263 169 -1140 -6 -1140 -263 -55 152 -1140 -63 -1140 165 -1140 -105 -287 -87 162 -1140 145 -1140 18 -105 113 -6 -263 -1140 122 -87 -5 -105 -187 138 -105 18 -287 138 -1140 -1140 -1140 189 -1140 -1140 -1140 -1140 212 -1140 -1140 -1140 212 -1140 189 -1140 -1140 18 -1140 145 -1140 212 -1140 -1140 -1140 95 -187 13 -31 -63 -6 -1140 137 -263 183 -1140 -1140 -1140 165 -1140 -63 -63 122 -87 -163 -5 -287 138 -263 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 27 E= 2.9e-050 0.407407 0.000000 0.555556 0.037037 0.740741 0.000000 0.259259 0.000000 0.037037 0.185185 0.777778 0.000000 0.148148 0.000000 0.851852 0.000000 0.111111 0.037037 0.148148 0.703704 0.000000 0.740741 0.000000 0.259259 0.111111 0.592593 0.259259 0.037037 0.000000 0.629630 0.148148 0.222222 0.111111 0.074074 0.703704 0.111111 0.259259 0.037037 0.703704 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.259259 0.000000 0.740741 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.074074 0.296296 0.185185 0.148148 0.259259 0.000000 0.592593 0.037037 0.962963 0.000000 0.000000 0.000000 0.851852 0.000000 0.148148 0.148148 0.629630 0.148148 0.074074 0.222222 0.037037 0.703704 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGGTCCCGGGTTCGARTCCCG MEME-3 regular expression -------------------------------------------------------------------------------- [GA][AG]GGT[CT][CG][CT]G[GA]GTTC[GA]A[AG][TC]CCC[GA] -------------------------------------------------------------------------------- Time 1103.00 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 width = 31 sites = 14 llr = 382 E-value = 5.1e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 Description -------------------------------------------------------------------------------- Simplified A a1::28441::1:a7::9::6:5::a:1:44 pos.-specific C ::1a7::4:545:::aa:4:26:a9:52111 probability G :91:125:9:6::::::1::145::::5646 matrix T ::8:::11:5:4a:3:::6a::::1:5121: bits 2.1 * ** * * 1.9 * * ** ** * * * 1.7 * * ** *** * * * 1.5 ** * * ** *** * *** Relative 1.3 ** * * * ****** * *** Entropy 1.1 **** * ** ******** ***** (39.4 bits) 0.8 ****** *** *************** 0.6 *************************** * * 0.4 *************************** * * 0.2 ******************************* 0.0 ------------------------------- Multilevel AGTCCAGAGCGCTAACCATTACACCACGGGG consensus AGAC TCT T C CGG TCTAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr6:26311545-26312045 + 41 7.20e-19 ctggattcaa agtccagagtgctaaccattacaccatgggg ccAACAACAC chr17:49192302-49192802 - 28 1.57e-17 CTGGATTCAA AGTCCAGAGTGCTAACCATTACACCATGGGA CCTGCTGGCT chr6:28941380-28941880 + 60 1.57e-17 ctggattcag agtccagagtgctaaccattacaccatggaa ccCTACTTAA chr15:65868893-65869393 + 8 1.57e-17 gattcag agtccagagtgctaaccattacaccatggaa ccGCCACGCA chr6:27519276-27519776 - 55 1.57e-17 CTGGATTCAG AGTCCAGAGTGCTAACCATTACACCATGGAA CCTCGCAATA chr17:8120671-8121171 - 56 1.99e-13 CGTCACTAGA AGTCCAATGCGCTATCCATTGCGCCACAGAG CCACCCGACG chr17:75034232-75034732 + 39 4.05e-13 ctggcttagg aggccagtgccttatccattaggccactggg gcGCGGTAAG chr15:89334865-89335365 - 10 6.11e-13 TCTGATCCGA AGTCAGACGCCTTATCCATTAGGCCACGCGG CCCGTCGGT chr6:28212822-28213322 - 17 1.38e-12 ATGGATTAGC AGTCCATCGCCTTAACCACTCGGCCACCTCG TCACACAAAG chr6:28597158-28597658 + 31 1.38e-12 atggattagc agtccatcgccttaaccactcggccacctcg tcACATGCTA chr6:144216316-144216816 - 33 1.38e-12 TTGGATCTTA AGTCCAACGCCTTAACCACTCGGCCATCCTG GTGCAGACGT chr6:26537292-26537792 - 8 4.40e-12 TCTGATCCGT AGTCAGACGCGTTATCCATTGCGCCACTGGC CCTGCGC chr6:27280067-27280567 + 43 1.21e-11 ttcgcgtgtg aggcgaacgtgataaccactacactacagaa gcCCTGACAT chr13:44917710-44918210 + 56 7.64e-11 cctgggtgaa aaccaggaatcctaaccgctagaccatgtgg gaGACGGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26311545-26312045 7.2e-19 40_[+4]_29 chr17:49192302-49192802 1.6e-17 27_[-4]_42 chr6:28941380-28941880 1.6e-17 59_[+4]_10 chr15:65868893-65869393 1.6e-17 7_[+4]_62 chr6:27519276-27519776 1.6e-17 54_[-4]_15 chr17:8120671-8121171 2e-13 55_[-4]_14 chr17:75034232-75034732 4e-13 38_[+4]_31 chr15:89334865-89335365 6.1e-13 9_[-4]_60 chr6:28212822-28213322 1.4e-12 16_[-4]_53 chr6:28597158-28597658 1.4e-12 30_[+4]_39 chr6:144216316-144216816 1.4e-12 32_[-4]_37 chr6:26537292-26537792 4.4e-12 7_[-4]_62 chr6:27280067-27280567 1.2e-11 42_[+4]_27 chr13:44917710-44918210 7.6e-11 55_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTCCARMGYSYTAACCAYTASRCCAYGGRR width=31 seqs=14 chr6:26311545-26312045 ( 41) AGTCCAGAGTGCTAACCATTACACCATGGGG 1 chr17:49192302-49192802 ( 28) AGTCCAGAGTGCTAACCATTACACCATGGGA 1 chr6:28941380-28941880 ( 60) AGTCCAGAGTGCTAACCATTACACCATGGAA 1 chr15:65868893-65869393 ( 8) AGTCCAGAGTGCTAACCATTACACCATGGAA 1 chr6:27519276-27519776 ( 55) AGTCCAGAGTGCTAACCATTACACCATGGAA 1 chr17:8120671-8121171 ( 56) AGTCCAATGCGCTATCCATTGCGCCACAGAG 1 chr17:75034232-75034732 ( 39) AGGCCAGTGCCTTATCCATTAGGCCACTGGG 1 chr15:89334865-89335365 ( 10) AGTCAGACGCCTTATCCATTAGGCCACGCGG 1 chr6:28212822-28213322 ( 17) AGTCCATCGCCTTAACCACTCGGCCACCTCG 1 chr6:28597158-28597658 ( 31) AGTCCATCGCCTTAACCACTCGGCCACCTCG 1 chr6:144216316-144216816 ( 33) AGTCCAACGCCTTAACCACTCGGCCATCCTG 1 chr6:26537292-26537792 ( 8) AGTCAGACGCGTTATCCATTGCGCCACTGGC 1 chr6:27280067-27280567 ( 43) AGGCGAACGTGATAACCACTACACTACAGAA 1 chr13:44917710-44918210 ( 56) AACCAGGAATCCTAACCGCTAGACCATGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.1562 E= 5.1e-049 212 -1045 -1045 -1045 -168 -1045 178 -1045 -1045 -192 -92 178 -1045 189 -1045 -1045 -10 140 -192 -1045 178 -1045 -34 -1045 64 -1045 89 -68 90 66 -1045 -68 -168 -1045 178 -1045 -1045 89 -1045 112 -1045 66 108 -1045 -168 89 -1045 90 -1045 -1045 -1045 212 212 -1045 -1045 -1045 164 -1045 -1045 32 -1045 189 -1045 -1045 -1045 189 -1045 -1045 202 -1045 -192 -1045 -1045 40 -1045 149 -1045 -1045 -1045 212 149 -34 -92 -1045 -1045 108 66 -1045 112 -1045 89 -1045 -1045 189 -1045 -1045 -1045 178 -1045 -168 212 -1045 -1045 -1045 -1045 89 -1045 112 -68 -34 89 -68 -1045 -92 125 -10 64 -92 66 -168 64 -192 108 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 14 E= 5.1e-049 1.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.928571 0.000000 0.000000 0.071429 0.142857 0.785714 0.000000 1.000000 0.000000 0.000000 0.214286 0.714286 0.071429 0.000000 0.785714 0.000000 0.214286 0.000000 0.357143 0.000000 0.500000 0.142857 0.428571 0.428571 0.000000 0.142857 0.071429 0.000000 0.928571 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.428571 0.571429 0.000000 0.071429 0.500000 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.000000 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.357143 0.000000 0.642857 0.000000 0.000000 0.000000 1.000000 0.642857 0.214286 0.142857 0.000000 0.000000 0.571429 0.428571 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.928571 0.000000 0.071429 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.142857 0.214286 0.500000 0.142857 0.000000 0.142857 0.642857 0.214286 0.357143 0.142857 0.428571 0.071429 0.357143 0.071429 0.571429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTCCARMGYSYTAACCAYTASRCCAYGGRR MEME-4 regular expression -------------------------------------------------------------------------------- AGTC[CA][AG][GA][AC]G[CT][GC][CT]TA[AT]CCA[TC]T[AC][CG][AG]CCA[CT][GC][GT][GA][GA] -------------------------------------------------------------------------------- Time 1441.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 width = 29 sites = 7 llr = 217 E-value = 6.3e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::1:::::::9::1:1914a::::::::: pos.-specific C 14::::::44::::::1:::::a:a:a41 probability G ::94:9a::::a69a::46:1::::a::: matrix T 96:6a1:a661:4::9:4::9a:a:::69 bits 2.1 * * * * * 1.9 * ** * * * ****** 1.7 * ** * * * ****** 1.5 * * ** ** *** ******** * Relative 1.3 * * **** ** **** ******** * Entropy 1.1 ***************** *********** (44.6 bits) 0.8 ***************** *********** 0.6 ***************************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel TTGTTGGTTTAGGGGTAGGATTCTCGCTT consensus C G CC T TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr16:3171831-3172331 + 20 1.34e-16 CACGGGAggc tcgttggtctaggggtatgattctcgctt cgggtgcgag chr7:128783234-128783734 + 19 1.34e-16 TACCAGTggc tcgttggtctaggggtatgattctcgctt agggtgcgag chr1:167714459-167714959 + 69 1.34e-16 CGAGAGCggc tcgttggtctaggggtatgattctcgctt cgg chr16:70778871-70779371 - 7 7.01e-16 AGCTGGAGCA TTGGTGGTTCAGTGGTAGAATTCTCGCCT GCCACG chr17:8125543-8126043 + 6 7.01e-16 GCgca ttggtggttcagtggtagaattctcgcct gccacgcggg chr1:121016672-121017172 - 12 8.25e-15 GAGAGAGGCA CTGGTGGTTCAGTGGTAGAATTCTCGCCT CCCACGCGGG chr19:10976827-10977327 - 12 7.09e-12 ATTTGTTTAT TTATTTGTTTTGGAGACAGAGTCTCGCTC TGTCACCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:3171831-3172331 1.3e-16 19_[+5]_52 chr7:128783234-128783734 1.3e-16 18_[+5]_53 chr1:167714459-167714959 1.3e-16 68_[+5]_3 chr16:70778871-70779371 7e-16 6_[-5]_65 chr17:8125543-8126043 7e-16 5_[+5]_66 chr1:121016672-121017172 8.2e-15 11_[-5]_60 chr19:10976827-10977327 7.1e-12 11_[-5]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYGKTGGTYYAGKGGTAKRATTCTCGCYT width=29 seqs=7 chr16:3171831-3172331 ( 20) TCGTTGGTCTAGGGGTATGATTCTCGCTT 1 chr7:128783234-128783734 ( 19) TCGTTGGTCTAGGGGTATGATTCTCGCTT 1 chr1:167714459-167714959 ( 69) TCGTTGGTCTAGGGGTATGATTCTCGCTT 1 chr16:70778871-70779371 ( 7) TTGGTGGTTCAGTGGTAGAATTCTCGCCT 1 chr17:8125543-8126043 ( 6) TTGGTGGTTCAGTGGTAGAATTCTCGCCT 1 chr1:121016672-121017172 ( 12) CTGGTGGTTCAGTGGTAGAATTCTCGCCT 1 chr19:10976827-10977327 ( 12) TTATTTGTTTTGGAGACAGAGTCTCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 12.435 E= 6.3e-017 -945 -92 -945 190 -945 66 -945 132 -68 -945 166 -945 -945 -945 66 132 -945 -945 -945 212 -945 -945 166 -68 -945 -945 188 -945 -945 -945 -945 212 -945 66 -945 132 -945 66 -945 132 190 -945 -945 -68 -945 -945 188 -945 -945 -945 108 90 -68 -945 166 -945 -945 -945 188 -945 -68 -945 -945 190 190 -92 -945 -945 -68 -945 66 90 90 -945 108 -945 212 -945 -945 -945 -945 -945 -92 190 -945 -945 -945 212 -945 188 -945 -945 -945 -945 -945 212 -945 188 -945 -945 -945 -945 188 -945 -945 188 -945 -945 -945 66 -945 132 -945 -92 -945 190 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 7 E= 6.3e-017 0.000000 0.142857 0.000000 0.857143 0.000000 0.428571 0.000000 0.571429 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.428571 0.000000 0.571429 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.857143 0.142857 0.000000 0.000000 0.142857 0.000000 0.428571 0.428571 0.428571 0.000000 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.142857 0.000000 0.857143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGKTGGTYYAGKGGTAKRATTCTCGCYT MEME-5 regular expression -------------------------------------------------------------------------------- T[TC]G[TG]TGGT[TC][TC]AG[GT]GGTA[GT][GA]ATTCTCGC[TC]T -------------------------------------------------------------------------------- Time 1779.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GGVSSMGGVSGCGGGGSCGSBG MEME-6 width = 22 sites = 148 llr = 1286 E-value = 4.1e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 Description -------------------------------------------------------------------------------- Simplified A 2:41:3::22::1222111:2: pos.-specific C 2324452243372231451531 probability G 6745627834616665628549 matrix T :1::::1:::121::1:1::2: bits 2.1 1.9 1.7 1.5 * Relative 1.3 * Entropy 1.1 * * (12.5 bits) 0.8 * * ** * 0.6 * ** ** ** * * ** * 0.4 ** ***** ** ** * ** * 0.2 ******************** * 0.0 ---------------------- Multilevel GGAGGCGGCGGCGGGGGCGGGG consensus CCGCCA CGCC ACACG CC sequence C AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr5:71455491-71455991 + 20 9.86e-09 gcggcgggag agaggaggaggcggcggcgggg cAGTGAAACT chr19:40285007-40285507 + 74 4.07e-08 cagcggcaac ggcgccggcagcggcagcggcg gcggc chr19:38849469-38849969 - 30 4.07e-08 AGCCGGGGCG GCGGGCGGCGGCGGCGGTGGGG TGAGGCCAGG chr19:41884131-41884631 + 70 1.17e-07 GCGGCTAGAG CGACGCGGCGGCAGGGGTGGGG AGAGTGCGG chr22:30356537-30357037 + 12 1.74e-07 CTCCGTGGGC ACGGGCGGCGGCGGGGGCACCG CCTGCACGGG chr19:38403235-38403735 + 17 2.54e-07 AGCAGCAGCG AGAGGCGGGCGCGGAGGTGCTG AGCGCCGGCG chr1:26695421-26695921 + 70 3.06e-07 TCCGGGTTTG CCAGGCGGCCGCGACGGCGCTG GGTAAAATG chr19:36605151-36605651 + 65 3.67e-07 AGCTGTCTAA GGACGCGGAACCGGGTGGGGAG GCCAGGGAGG chr19:34963799-34964299 - 2 6.22e-07 CAGGAGCTGG GGACCCCGAGTTGGGGGCGGGG C chr19:33795778-33796278 + 68 1.03e-06 TCCCGCCCCC AGCCCCGGGCGCCGCGGCGGCG GCTGCTCTCC chr20:45934590-45935090 + 79 1.03e-06 TCCGAAGCTG GGGGGCGGCGGCCCCTCCGGCG chr19:35995088-35995588 + 64 1.41e-06 gtgggaagcc gggcgccgaggcgcgagtgcgG GCAGAGTTCC chr1:234599726-234600226 - 61 1.41e-06 GTGCGAGTGC GCGCGAGGGCCCGAGTGCGCCG CCGCCGGCGC chr19:37655843-37656343 - 55 1.65e-06 CTCGGTCCAG GTACGCGGGGGCGCGGCGGCCG TCACTCAGCA chr19:40444301-40444801 + 12 1.65e-06 AACTGGCAGG GGGCGGGGCAGCGACTCCGGGG TGGAGGGCGG chr10:72354647-72355147 + 75 1.92e-06 GCGGAACCAG GGAGGGGGAGGCCGGGCGAGCG AAGG chr8:33472929-33473429 + 38 2.24e-06 GATCAGGAGC GGAAGAGGCGGCCGCGCGGGCG AGCTCGGGGC chr17:79839723-79840223 - 42 2.24e-06 AGCCTGGAGG CGAGGCGGGGCCCGCAGTGGGG CGCGAGCTGC chr1:42335093-42335593 - 2 2.60e-06 AGGGACTTGA CGCCGCTGACGCCGGGCCGGCG G chr1:226309258-226309758 - 6 2.60e-06 CGCGGGCCGC GGAACATGCGCCGGGAGCGGGG CCCGG chr19:33302147-33302647 - 26 2.60e-06 CCGACTTCTA CGAGGCGGAGCCGCGGCCCCCG ATGAGCAGCC chr19:40443240-40443740 - 44 2.60e-06 AAGCAAATTT AGAGCCGGAGTCTGGGGTGGGG GAGGGGTGTT chr19:32345338-32345838 - 23 3.01e-06 GGTGACCCGA ATGGCGGGCAGCGGGGGCGGGG CGAGGCTCAG chr19:35716870-35717370 - 79 3.47e-06 . GGAGGACGGGGCGCCTCGGGGG TGGAAGAAGT chr1:236142334-236142834 + 60 3.47e-06 CGGAGACCCC CGCGGGGGCGGCGGCGGCCGTG AGCCCCGATG chr1:226110064-226110564 - 27 4.00e-06 GGCAGCTCCC GGGCCAGGCGGCAGAGGAGCCG GGGGGAACTG chr14:90396685-90397185 + 70 4.00e-06 GCGCCGCTCT GCGCGAGGCGGCTCCGCCGCGG CGGAGGGAT chr19:37719200-37719700 - 39 4.00e-06 GAGTGGGGCT GCAGGAGGCGCTCAGAGCGCGG AGGCCCCCAG chr1:229625971-229626471 - 5 4.60e-06 TCCTTCCGCC GGACGCCGGCGGCGCAGCGGGG AGGG chr19:32581045-32581545 + 22 5.27e-06 GAGCCATGGC GGACGAGGAGCTTGAGGCGCTG AGGAGACAGA chr3:51538445-51538945 + 23 5.27e-06 CCGTGCGGTC GGGCGCGCGGGCCGGGAGGGGG ACGCTTTCTG chr16:3149551-3150051 - 28 6.04e-06 CCTCAGGCCT GGAGGCAGAGCCGGCGCCGGAG CGAGCTGCGG chr7:155069905-155070405 + 16 6.04e-06 CTCCCGGGCG GGGCGAGGTGGCAGCACCGCGG ACAGCACCAC chr19:38264260-38264760 - 58 6.04e-06 CGAAGGTGGC CGGGCAGGCAGGGGGCGGGGCG CACCTGGCTA chr6:31795678-31796178 + 3 7.86e-06 ct gggcgcggacgcaggacgagag gacACCCCTG chr2:677024-677524 - 13 8.95e-06 CCACCAGTTC GGGGGAGGACGGCGGAGAGGCG TAGGGTAGGC chr1:229342666-229343166 - 54 8.95e-06 GCCTGGGCGC AGAGGATCGGCCGGGCGCGGCG GGAAGGAGGT chr13:50081500-50082000 - 32 8.95e-06 GGCAGTGGTG GGTGCAGGGAGTGGGCGCGGGG TCTACTCTCA chr19:50024980-50025480 + 19 1.02e-05 CTGACGTCAC GGACGCCCCGGCCGAGCTGCGG CTAGGGGGTC chr6:159726788-159727288 + 33 1.02e-05 AGGCAGCCCC GCAGCCGCAGGTGGCCCCGGCG AGTACTTCCA chr20:1118293-1118793 - 12 1.15e-05 CTGAAAGGTT CCGCCAGGGAGTGCGAGCGGGG CGTGGCCCCT chr14:102087247-10208774 + 21 1.15e-05 GAGCGGAACG CGGGGCCGGGGTGGGAGGCGCG CCTGGAGGGA chr1:93078873-93079373 + 27 1.30e-05 CTATTGTGTT AGCCCCGGCGGCGGAAGGACTG AGCCTCACTG chr19:34134470-34134970 - 42 1.30e-05 GCAGCCGGAG GGGCGCGCAGGAGGGTCCGGGG CAGGGGCCGG chr21:44939702-44940202 - 20 1.30e-05 GCCGCCGGAA GTACCCGGAAGCGGCTCGGGCG GGCGCAGGGT chr16:89507922-89508422 - 74 1.30e-05 GTCTG CGAGGAGGTCGCGGGTGCCCTG GTTTTTTTGA chr19:55599880-55600380 + 50 1.30e-05 GACACACCAG GGCCGCCGGTGCGCAGGCGCGG CTTCCGGGCG chr14:103521008-10352150 + 19 1.30e-05 TAGCGGGGAG GGAGGACGCCGCGAGAGGGCGC AGAGGGACAC chr19:13846870-13847370 - 10 1.30e-05 TTCCTGAGGT GGGGGCTGGGCCAGGCCTGGGG TCTATTCCT chr5:118988132-118988632 - 60 1.30e-05 AGCGGCGGGA GGGCGGCGCAGTGCCGGCGGCG GCTGCCCTGG chr6:31736140-31736640 + 1 1.30e-05 . CTGGGAGGGGCTGGGACCGGGG AAGGCGGGTC chr19:40716843-40717343 + 48 1.30e-05 ATTTAAAGGG ATAGGAGGGGCCGGGTCGGCCG AAGCCCGAAC chr19:38975748-38976248 + 43 1.47e-05 CACATCCCCA AGACGCCCCCGCGGGGGGACTG GTCCTAGCTC chr17:3846059-3846559 + 3 1.47e-05 TC ACGGCCGCCGGCTAGAGCGCCG CTGCCACTGG chr15:74541136-74541636 + 63 1.47e-05 GGAGGGGCCG AGGCCAGGAGCCGAGGCAGGTG TAGAGAGAGA chr5:43120709-43121209 + 4 1.66e-05 TGC CGGGGCCGCGGCCGCCCGGGTG CCCAACCGAA chr12:56630142-56630642 - 37 1.87e-05 GCGGGCTTTA GGACCCTGTGGCGGAGGCCGCG TGGGGAGACT chr6:111483710-111484210 - 2 1.87e-05 GCAGCAAAGA GGAGGGGGCACCGCGGCTCGCG C chr19:34734074-34734574 + 68 1.87e-05 ACCAGCGACG CGGGGCGCCTGCGGGGACGGTG AGGCCCTGCT chr8:94719580-94720080 + 47 2.10e-05 CTCTGGTTCC CGGGCCGCCTGCGGGGACGCGG TTGGCGGCGA chr15:72117711-72118211 - 72 2.10e-05 GACTGCG AGAGGCGGCGGCGGAGGCAGTA GTTGCACCGG chr19:2945199-2945699 + 76 2.10e-05 GGAGACCAGA CGACGAGGCCCCAGGAGGCCGG ACC chr5:134632651-134633151 - 32 2.10e-05 AAGACTGCCA GGAGGCGGAACCTAGGGCGCTC GGCGACGCGG chr1:244652994-244653494 + 41 2.35e-05 CCCCTGAAGC GCCCGCGGGGGTGAGAGCGGCC TCCGGCCCCG chr4:139555267-139555767 - 79 2.35e-05 . GCAGCCGCGGCCCAGGCGGCAG CTCTTCCGAA chr1:228165642-228166142 - 8 2.35e-05 CGCCAGCGCC AGACCGGGCCGCCGCGCCCCGG AGTGGCG chr10:6088650-6089150 + 49 2.63e-05 GTAAGAAGAC GCCGGCGGAGGGGAGCGTGCAG TGCGGTCCTC chr19:39409834-39410334 + 75 2.63e-05 CCGCGCGTCT AGGAGGGGCCCCGGGGGAGCCG CGTC chr3:12556726-12557226 - 16 2.63e-05 AATTGGTTCC GCACCGGGGATCGGGCCGGCTG TCCCGGCATC chr2:176129362-176129862 + 73 2.63e-05 CTTTAAGGCC GGCGGAGGCATCTCGGGCCGGG CGCGGC chr11:65919104-65919604 + 70 2.95e-05 CTCCGCGGGA AACGGCGGGGGCGGAGCGGGCG GCACCAGGA chr17:7234331-7234831 - 28 2.95e-05 ATCACGTGAC GGAGGGCGGCTGAGGAGCGCGG GGTGGCTGCC chr21:33480022-33480522 - 41 2.95e-05 GTGGGAGCCC GGCGGCGGCCGCCCACCGGCAG GGGACAGGAG chr7:100479077-100479577 - 23 2.95e-05 GCGGGAAGCC CCAGGAGGGAGGGAGGGAGGAG GAAGGGGAGG chr12:122526595-12252709 + 66 2.95e-05 CATAGTTCAG AGTCCCGGCCGCTAGAGCGGCG CCTCCACTTG chr9:136109588-136110088 + 76 2.95e-05 CTGGGGGAGG GGCGCCGGGCCAGGAGCCGCTG AAT chr17:30708656-30709156 - 70 3.29e-05 CGCAAAATC CGGCCCGGAGTCGCCGCCCGGG ACTGGCCGCC chr21:46286007-46286507 - 60 3.29e-05 TAGTGCTGAG CGAACCGGAAGTCGGTCCGCGG CGTTTTCTGC chr1:109483996-109484496 - 77 3.66e-05 TG GCAGGGTGGGCTGCGAGCGGTG AGCAGGCGCT chr16:30526749-30527249 + 3 3.66e-05 GC CCCGGAGCCCGCGGGGCTACCG GGGCAGTGTG chr19:44212403-44212903 + 74 3.66e-05 CTTGGGATGG Agaggtcgcggccgcggcggag gccga chr6:24774850-24775350 + 78 3.66e-05 TGGGCAAGAG GCGGCAGGAAGTGGGTACGCAG G chr19:2236189-2236689 - 6 3.66e-05 CGGGTCGCCA GCGCCACGCAGCGGAGGCGGGC GGCAT chr19:37370952-37371452 - 26 4.08e-05 TCTGCAAACG GGCCCCGCGACCGAGACCCGCG ACGTCACCTC chr15:78873289-78873789 + 72 4.08e-05 GGTGGGTTTG GCGCCACGGGGCGGGAGAAGTG CGTTGTA chr2:169824727-169825227 - 11 4.08e-05 GATAAACGCT GCAGCTCGGCGCCGGGCCGCTG GGCGGCGAAC chr2:55419708-55420208 - 67 4.08e-05 GCAGCTGCAC GGGAGGGGCGGGGAGTCGGCGG AAGGATATCG chr15:75368450-75368950 - 8 4.08e-05 CCCGGGACTG GGAGGCGCCCTCTGGACGCCGG AACCTTT chr19:42387050-42387550 - 65 4.53e-05 CATCCAGGTG CGCGCCGGGCTGGGGACCCGCG GGAGCAGGGA chr19:38388231-38388731 - 26 4.53e-05 TGCTATGAGG AGGGGACGGGGCAGGGACAGGG ACTGGTCTCA chr5:72106831-72107331 - 64 4.53e-05 TGGTCGGGGC AGGGCCGCGAGCCAAGGGGCTG GGGCGCCCGC chr16:30395099-30395599 - 3 5.02e-05 TAGCTCTGTG GCCGGCGGGCGGCAGCGTGCGG CC chr6:28943421-28943921 - 53 5.02e-05 GTGGTAGCGT GGCCGAGCGGTCTAAGGCGCTG GATTAAGGCT chr16:22296892-22297392 + 56 5.02e-05 TGggtagcgt ggccgagcggtctaaggcgctg gattaaggct chr19:40634424-40634924 - 51 5.57e-05 ACTAGGGGGC GCAGCCGGCTTGGGCTGCGCCG GCGCGCGGTG chr5:134411708-134412208 + 65 5.57e-05 CCAACCTGGA GCGCCCTCGCCCGGAGCGGCGG CCTGCGGGGG chr11:78079601-78080101 + 50 5.57e-05 TCCTCCTCTG CGCGCCGGACTCACGGGCACGG CGCAGCGCGG chr2:3574912-3575412 - 76 6.16e-05 AGA GTCCCAGGAAGCGGCTCTGGGG ACGAGTGTCT chr8:38386416-38386916 - 24 6.16e-05 TCTGATGAGA GGAGCAGGATGCGGACCGAGCG GGATCCGGAG chr19:37251769-37252269 - 51 6.80e-05 GGCCGATTGA AGGCCAGGACTCCCCGCCGCTG ACCCTCCAGT chr6:143511331-143511831 + 30 6.80e-05 GGCAGGGCAC Ggcggcggcggcagcagcagca acagcaacag chr19:17334585-17335085 - 5 6.80e-05 AGCGCTCGGG CGAGCGAGGACCGAGGCCGGCG CGGG chr17:18625525-18626025 - 8 6.80e-05 TCTTTTTCTG GGAGGCTGGAGCTGCAGCGCCA CCTGCAG chr20:58650913-58651413 + 3 6.80e-05 CC GTGCCCCGGGGCAGGAGTGCAG GGAGCTCCCG chr5:74766784-74767284 + 2 6.80e-05 T GAAGCAGGAGGCGCGAGCCGCG CCAAAGTCTG chr15:76311015-76311515 - 19 7.50e-05 CCCTCAGATT CGACCAGCCCTCGCGCCCGCAG GCCGGTCCCC chr19:36379213-36379713 - 51 7.50e-05 TCGCTTGAGC CCGGGAGGTCGCGGCTGCAGTG AGCTCTAATC chr16:78099298-78099798 - 75 7.50e-05 CGCG ACGGCCGGCGTCAAAGGGGCAG GGCCTGGAGA chr16:2751934-2752434 - 31 8.27e-05 GTTTCCCGAG CGAGCCCGCAGCTGCACAGCAG TCCGCCTTCC chr7:100429286-100429786 - 3 9.09e-05 CACCCACCGT AGGCGGGGGACGGGAGCTGGTG TG chr1:244970764-244971264 + 2 9.09e-05 C GGGGGGTGGCCTGGGTGAGGAG GAGTTCTGGC chr10:93702424-93702924 + 1 9.09e-05 . GCACCGTCCCCCGAGTGCGCCG ACCTTGTGCT chr15:82540280-82540780 + 78 9.09e-05 GCGCCCCCTG GCGGAGTGGAGCGGGGGCGGCG G chr15:70892041-70892541 + 32 9.99e-05 GGGCCGGCAT GGCGGCCGTCTTCGGTGCGCGG GAGCCGGGTT chr1:223846001-223846501 - 65 9.99e-05 GACTCGGAGC CGCCGAGGAGGTGACGGCGGCA GCCCTGGGGC chr5:177404101-177404601 + 2 1.10e-04 C GGAGGCGCCGCCTGGGTTGGGG TCTGGCACTG chr6:35259449-35259949 + 79 1.10e-04 ATCGCGCGAG GCAAGCTgcgcgcgggcgggcg chr16:30092466-30092966 + 19 1.10e-04 CCGGGCTGGA GCCACATGCGTCGGGGGAGCGG GGGTCAGTCC chr19:58002602-58003102 + 68 1.10e-04 GCGGGCACTT CCGGCGTCGGGCAGCGGCGCCG CCATGACAGG chr6:131628062-131628562 + 61 1.20e-04 TGGAGAAGGG CGGCCCGCAAGCCGGACGAGAG CGCCCCCAAA chr17:44689856-44690356 - 55 1.20e-04 GAGTGGGCGG CCAGCATCCCCCGAAAGCGCGG GGAAGGCAGC chr7:129779801-129780301 - 74 1.20e-04 CCTCC CCCGCCTGCAGCGCGGAGGCGG CTCCTCTTCA chr5:112160514-112161014 - 27 1.20e-04 CGCTATGGCG AGACGCCGCCGTGTGGCCGGAG GGAGAAGTGC chr17:8120671-8121171 + 33 1.20e-04 GTAAGCTACA AGACGCCGCCGTTCGTCGGGTg gctctgtggc chr19:39412411-39412911 - 69 1.32e-04 CTGGGTGTCA CGGGGCTCGTGTGACGGCGGCG GCGCCACATC chr19:37594258-37594758 + 1 1.32e-04 . GTCCGCGGCAGGGGCTCCAGGG GCACACTCAT chr9:40991925-40992425 + 46 1.32e-04 CCTCGAGAGG GCGCCAGGGAGCAGATGCGCGC AGACACCTTT chr1:35769552-35770052 - 13 1.32e-04 GAGGTTAGGT GGGGCCGGGGTAGACCCCGCTG ACCCGAGGCG chr1:234373473-234373973 - 67 1.44e-04 TTGCACAAGA GGAACCCGCGGCTCGGGGACAG TAAGGGACCT chr22:41446560-41447060 - 9 1.44e-04 CTCACTTCGG GCCGGGGCGCGGGAAGGTGCGG GTTGTTGG chr22:46053537-46054037 + 76 1.57e-04 GTGCCAGGCT CGCCGCCGAGCTCGGGCAGCAG GGT chr19:29873223-29873723 + 66 1.57e-04 AGCAGCGTGA GGTGGCTGCCCGAGGGCGGGCG GGGTGCTGCT chr19:41262212-41262712 - 2 1.57e-04 AGGAGCCGCC ACTGGAGGGCGTCCGGGCGCTG C chr16:73070524-73071024 - 71 1.57e-04 AGTGGTGG GGGAGGGGACCGGGCGCTGGAG AGAGGCAGAG chr13:75480686-75481186 - 58 1.57e-04 CGCGTGGAGG AGCGCCCGTCCCGGGAGGACGG CGGTGTCTGG chr16:4944780-4945280 - 34 1.87e-04 TCTGCCAGGG GGCCCGGGCGGGTAGGGGCCTG AGGCACATTC chr19:40598113-40598613 - 79 2.03e-04 . GGGCGCGCGCCCAGACCCCGAG AGGAGAGCAG chr19:40348252-40348752 + 31 2.21e-04 ACCCCAACAG GCCGCCACCAGCGAGAGTGCGG CCATAACCAT chr20:35954294-35954794 - 3 2.21e-04 CCGGGTGCTC GCGCGCCGACCTGGACGCAGAG AA chr19:33373052-33373552 - 31 2.21e-04 TTCTGCGAAC GGAACGCCCCGCAGGCGGGCGG GCTTTGTCGC chr2:241102100-241102600 - 59 2.21e-04 TCCACCACAC CGCGCTGGCGCTGGGAACGGCG TCGGTGACGG chr10:86399875-86400375 + 72 2.21e-04 AATGAGCCCT AGGCGGCCGCGCAGCGGTGCAG TGGGCGC chrX:73944010-73944510 + 54 2.40e-04 TTTAGGTAGT GCACGACGGCTGGGCGCCGGGC CTGTTTGGCT chr17:82106011-82106511 + 60 2.40e-04 TGTCCCTACC GGAGGCTGCATCACGGAAGGCG GGCACACAGG chr6:143450500-143451000 + 1 2.60e-04 . GCGCGGGCAGCGGAACGCGGCG GGCCCGGGAC chr6:87155267-87155767 + 44 2.82e-04 CGTGCAAGCG CGCCCGGCACGTGACCCCGCCG AACGTGGCAT chr1:1375031-1375531 - 29 3.05e-04 GAATCGGGGG CCGCGAGGACGCCAGCGGGCGC TGTGCGTAGG chr19:36054846-36055346 + 53 4.14e-04 ATCTGCCTAC GGCGGCGGACGCGACTCTCGAC GGCCTCCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:71455491-71455991 9.9e-09 19_[+6]_59 chr19:40285007-40285507 4.1e-08 73_[+6]_5 chr19:38849469-38849969 4.1e-08 29_[-6]_49 chr19:41884131-41884631 1.2e-07 69_[+6]_9 chr22:30356537-30357037 1.7e-07 11_[+6]_67 chr19:38403235-38403735 2.5e-07 16_[+6]_62 chr1:26695421-26695921 3.1e-07 69_[+6]_9 chr19:36605151-36605651 3.7e-07 64_[+6]_14 chr19:34963799-34964299 6.2e-07 1_[-6]_77 chr19:33795778-33796278 1e-06 67_[+6]_11 chr20:45934590-45935090 1e-06 78_[+6] chr19:35995088-35995588 1.4e-06 63_[+6]_15 chr1:234599726-234600226 1.4e-06 60_[-6]_18 chr19:37655843-37656343 1.7e-06 54_[-6]_24 chr19:40444301-40444801 1.7e-06 11_[+6]_67 chr10:72354647-72355147 1.9e-06 74_[+6]_4 chr8:33472929-33473429 2.2e-06 37_[+6]_41 chr17:79839723-79840223 2.2e-06 41_[-6]_37 chr1:42335093-42335593 2.6e-06 1_[-6]_77 chr1:226309258-226309758 2.6e-06 5_[-6]_73 chr19:33302147-33302647 2.6e-06 25_[-6]_53 chr19:40443240-40443740 2.6e-06 43_[-6]_35 chr19:32345338-32345838 3e-06 22_[-6]_56 chr19:35716870-35717370 3.5e-06 78_[-6] chr1:236142334-236142834 3.5e-06 59_[+6]_19 chr1:226110064-226110564 4e-06 26_[-6]_52 chr14:90396685-90397185 4e-06 69_[+6]_9 chr19:37719200-37719700 4e-06 38_[-6]_40 chr1:229625971-229626471 4.6e-06 4_[-6]_74 chr19:32581045-32581545 5.3e-06 21_[+6]_57 chr3:51538445-51538945 5.3e-06 22_[+6]_56 chr16:3149551-3150051 6e-06 27_[-6]_51 chr7:155069905-155070405 6e-06 15_[+6]_63 chr19:38264260-38264760 6e-06 57_[-6]_21 chr6:31795678-31796178 7.9e-06 2_[+6]_76 chr2:677024-677524 8.9e-06 12_[-6]_66 chr1:229342666-229343166 8.9e-06 53_[-6]_25 chr13:50081500-50082000 8.9e-06 31_[-6]_47 chr19:50024980-50025480 1e-05 18_[+6]_60 chr6:159726788-159727288 1e-05 32_[+6]_46 chr20:1118293-1118793 1.2e-05 11_[-6]_67 chr14:102087247-10208774 1.2e-05 20_[+6]_58 chr1:93078873-93079373 1.3e-05 26_[+6]_52 chr19:34134470-34134970 1.3e-05 41_[-6]_37 chr21:44939702-44940202 1.3e-05 19_[-6]_59 chr16:89507922-89508422 1.3e-05 73_[-6]_5 chr19:55599880-55600380 1.3e-05 49_[+6]_29 chr14:103521008-10352150 1.3e-05 18_[+6]_60 chr19:13846870-13847370 1.3e-05 9_[-6]_69 chr5:118988132-118988632 1.3e-05 59_[-6]_19 chr6:31736140-31736640 1.3e-05 [+6]_78 chr19:40716843-40717343 1.3e-05 47_[+6]_31 chr19:38975748-38976248 1.5e-05 42_[+6]_36 chr17:3846059-3846559 1.5e-05 2_[+6]_76 chr15:74541136-74541636 1.5e-05 62_[+6]_16 chr5:43120709-43121209 1.7e-05 3_[+6]_75 chr12:56630142-56630642 1.9e-05 36_[-6]_42 chr6:111483710-111484210 1.9e-05 1_[-6]_77 chr19:34734074-34734574 1.9e-05 67_[+6]_11 chr8:94719580-94720080 2.1e-05 46_[+6]_32 chr15:72117711-72118211 2.1e-05 71_[-6]_7 chr19:2945199-2945699 2.1e-05 75_[+6]_3 chr5:134632651-134633151 2.1e-05 31_[-6]_47 chr1:244652994-244653494 2.4e-05 40_[+6]_38 chr4:139555267-139555767 2.4e-05 78_[-6] chr1:228165642-228166142 2.4e-05 7_[-6]_71 chr10:6088650-6089150 2.6e-05 48_[+6]_30 chr19:39409834-39410334 2.6e-05 74_[+6]_4 chr3:12556726-12557226 2.6e-05 15_[-6]_63 chr2:176129362-176129862 2.6e-05 72_[+6]_6 chr11:65919104-65919604 2.9e-05 69_[+6]_9 chr17:7234331-7234831 2.9e-05 27_[-6]_51 chr21:33480022-33480522 2.9e-05 40_[-6]_38 chr7:100479077-100479577 2.9e-05 22_[-6]_56 chr12:122526595-12252709 2.9e-05 65_[+6]_13 chr9:136109588-136110088 2.9e-05 75_[+6]_3 chr17:30708656-30709156 3.3e-05 69_[-6]_9 chr21:46286007-46286507 3.3e-05 59_[-6]_19 chr1:109483996-109484496 3.7e-05 76_[-6]_2 chr16:30526749-30527249 3.7e-05 2_[+6]_76 chr19:44212403-44212903 3.7e-05 73_[+6]_5 chr6:24774850-24775350 3.7e-05 77_[+6]_1 chr19:2236189-2236689 3.7e-05 5_[-6]_73 chr19:37370952-37371452 4.1e-05 25_[-6]_53 chr15:78873289-78873789 4.1e-05 71_[+6]_7 chr2:169824727-169825227 4.1e-05 10_[-6]_68 chr2:55419708-55420208 4.1e-05 66_[-6]_12 chr15:75368450-75368950 4.1e-05 7_[-6]_71 chr19:42387050-42387550 4.5e-05 64_[-6]_14 chr19:38388231-38388731 4.5e-05 25_[-6]_53 chr5:72106831-72107331 4.5e-05 63_[-6]_15 chr16:30395099-30395599 5e-05 2_[-6]_76 chr6:28943421-28943921 5e-05 52_[-6]_26 chr16:22296892-22297392 5e-05 55_[+6]_23 chr19:40634424-40634924 5.6e-05 50_[-6]_28 chr5:134411708-134412208 5.6e-05 64_[+6]_14 chr11:78079601-78080101 5.6e-05 49_[+6]_29 chr2:3574912-3575412 6.2e-05 75_[-6]_3 chr8:38386416-38386916 6.2e-05 23_[-6]_55 chr19:37251769-37252269 6.8e-05 50_[-6]_28 chr6:143511331-143511831 6.8e-05 29_[+6]_49 chr19:17334585-17335085 6.8e-05 4_[-6]_74 chr17:18625525-18626025 6.8e-05 7_[-6]_71 chr20:58650913-58651413 6.8e-05 2_[+6]_76 chr5:74766784-74767284 6.8e-05 1_[+6]_77 chr15:76311015-76311515 7.5e-05 18_[-6]_60 chr19:36379213-36379713 7.5e-05 50_[-6]_28 chr16:78099298-78099798 7.5e-05 74_[-6]_4 chr16:2751934-2752434 8.3e-05 30_[-6]_48 chr7:100429286-100429786 9.1e-05 2_[-6]_76 chr1:244970764-244971264 9.1e-05 1_[+6]_77 chr10:93702424-93702924 9.1e-05 [+6]_78 chr15:82540280-82540780 9.1e-05 77_[+6]_1 chr15:70892041-70892541 0.0001 31_[+6]_47 chr1:223846001-223846501 0.0001 64_[-6]_14 chr5:177404101-177404601 0.00011 1_[+6]_77 chr6:35259449-35259949 0.00011 78_[+6] chr16:30092466-30092966 0.00011 18_[+6]_60 chr19:58002602-58003102 0.00011 67_[+6]_11 chr6:131628062-131628562 0.00012 60_[+6]_18 chr17:44689856-44690356 0.00012 54_[-6]_24 chr7:129779801-129780301 0.00012 73_[-6]_5 chr5:112160514-112161014 0.00012 26_[-6]_52 chr17:8120671-8121171 0.00012 32_[+6]_46 chr19:39412411-39412911 0.00013 68_[-6]_10 chr19:37594258-37594758 0.00013 [+6]_78 chr9:40991925-40992425 0.00013 45_[+6]_33 chr1:35769552-35770052 0.00013 12_[-6]_66 chr1:234373473-234373973 0.00014 66_[-6]_12 chr22:41446560-41447060 0.00014 8_[-6]_70 chr22:46053537-46054037 0.00016 75_[+6]_3 chr19:29873223-29873723 0.00016 65_[+6]_13 chr19:41262212-41262712 0.00016 1_[-6]_77 chr16:73070524-73071024 0.00016 70_[-6]_8 chr13:75480686-75481186 0.00016 57_[-6]_21 chr16:4944780-4945280 0.00019 33_[-6]_45 chr19:40598113-40598613 0.0002 78_[-6] chr19:40348252-40348752 0.00022 30_[+6]_48 chr20:35954294-35954794 0.00022 2_[-6]_76 chr19:33373052-33373552 0.00022 30_[-6]_48 chr2:241102100-241102600 0.00022 58_[-6]_20 chr10:86399875-86400375 0.00022 71_[+6]_7 chrX:73944010-73944510 0.00024 53_[+6]_25 chr17:82106011-82106511 0.00024 59_[+6]_19 chr6:143450500-143451000 0.00026 [+6]_78 chr6:87155267-87155767 0.00028 43_[+6]_35 chr1:1375031-1375531 0.0003 28_[-6]_50 chr19:36054846-36055346 0.00041 52_[+6]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGVSSMGGVSGCGGGGSCGSBG width=22 seqs=148 chr5:71455491-71455991 ( 20) AGAGGAGGAGGCGGCGGCGGGG 1 chr19:40285007-40285507 ( 74) GGCGCCGGCAGCGGCAGCGGCG 1 chr19:38849469-38849969 ( 30) GCGGGCGGCGGCGGCGGTGGGG 1 chr19:41884131-41884631 ( 70) CGACGCGGCGGCAGGGGTGGGG 1 chr22:30356537-30357037 ( 12) ACGGGCGGCGGCGGGGGCACCG 1 chr19:38403235-38403735 ( 17) AGAGGCGGGCGCGGAGGTGCTG 1 chr1:26695421-26695921 ( 70) CCAGGCGGCCGCGACGGCGCTG 1 chr19:36605151-36605651 ( 65) GGACGCGGAACCGGGTGGGGAG 1 chr19:34963799-34964299 ( 2) GGACCCCGAGTTGGGGGCGGGG 1 chr19:33795778-33796278 ( 68) AGCCCCGGGCGCCGCGGCGGCG 1 chr20:45934590-45935090 ( 79) GGGGGCGGCGGCCCCTCCGGCG 1 chr19:35995088-35995588 ( 64) GGGCGCCGAGGCGCGAGTGCGG 1 chr1:234599726-234600226 ( 61) GCGCGAGGGCCCGAGTGCGCCG 1 chr19:37655843-37656343 ( 55) GTACGCGGGGGCGCGGCGGCCG 1 chr19:40444301-40444801 ( 12) GGGCGGGGCAGCGACTCCGGGG 1 chr10:72354647-72355147 ( 75) GGAGGGGGAGGCCGGGCGAGCG 1 chr8:33472929-33473429 ( 38) GGAAGAGGCGGCCGCGCGGGCG 1 chr17:79839723-79840223 ( 42) CGAGGCGGGGCCCGCAGTGGGG 1 chr1:42335093-42335593 ( 2) CGCCGCTGACGCCGGGCCGGCG 1 chr1:226309258-226309758 ( 6) GGAACATGCGCCGGGAGCGGGG 1 chr19:33302147-33302647 ( 26) CGAGGCGGAGCCGCGGCCCCCG 1 chr19:40443240-40443740 ( 44) AGAGCCGGAGTCTGGGGTGGGG 1 chr19:32345338-32345838 ( 23) ATGGCGGGCAGCGGGGGCGGGG 1 chr19:35716870-35717370 ( 79) GGAGGACGGGGCGCCTCGGGGG 1 chr1:236142334-236142834 ( 60) CGCGGGGGCGGCGGCGGCCGTG 1 chr1:226110064-226110564 ( 27) GGGCCAGGCGGCAGAGGAGCCG 1 chr14:90396685-90397185 ( 70) GCGCGAGGCGGCTCCGCCGCGG 1 chr19:37719200-37719700 ( 39) GCAGGAGGCGCTCAGAGCGCGG 1 chr1:229625971-229626471 ( 5) GGACGCCGGCGGCGCAGCGGGG 1 chr19:32581045-32581545 ( 22) GGACGAGGAGCTTGAGGCGCTG 1 chr3:51538445-51538945 ( 23) GGGCGCGCGGGCCGGGAGGGGG 1 chr16:3149551-3150051 ( 28) GGAGGCAGAGCCGGCGCCGGAG 1 chr7:155069905-155070405 ( 16) GGGCGAGGTGGCAGCACCGCGG 1 chr19:38264260-38264760 ( 58) CGGGCAGGCAGGGGGCGGGGCG 1 chr6:31795678-31796178 ( 3) GGGCGCGGACGCAGGACGAGAG 1 chr2:677024-677524 ( 13) GGGGGAGGACGGCGGAGAGGCG 1 chr1:229342666-229343166 ( 54) AGAGGATCGGCCGGGCGCGGCG 1 chr13:50081500-50082000 ( 32) GGTGCAGGGAGTGGGCGCGGGG 1 chr19:50024980-50025480 ( 19) GGACGCCCCGGCCGAGCTGCGG 1 chr6:159726788-159727288 ( 33) GCAGCCGCAGGTGGCCCCGGCG 1 chr20:1118293-1118793 ( 12) CCGCCAGGGAGTGCGAGCGGGG 1 chr14:102087247-10208774 ( 21) CGGGGCCGGGGTGGGAGGCGCG 1 chr1:93078873-93079373 ( 27) AGCCCCGGCGGCGGAAGGACTG 1 chr19:34134470-34134970 ( 42) GGGCGCGCAGGAGGGTCCGGGG 1 chr21:44939702-44940202 ( 20) GTACCCGGAAGCGGCTCGGGCG 1 chr16:89507922-89508422 ( 74) CGAGGAGGTCGCGGGTGCCCTG 1 chr19:55599880-55600380 ( 50) GGCCGCCGGTGCGCAGGCGCGG 1 chr14:103521008-10352150 ( 19) GGAGGACGCCGCGAGAGGGCGC 1 chr19:13846870-13847370 ( 10) GGGGGCTGGGCCAGGCCTGGGG 1 chr5:118988132-118988632 ( 60) GGGCGGCGCAGTGCCGGCGGCG 1 chr6:31736140-31736640 ( 1) CTGGGAGGGGCTGGGACCGGGG 1 chr19:40716843-40717343 ( 48) ATAGGAGGGGCCGGGTCGGCCG 1 chr19:38975748-38976248 ( 43) AGACGCCCCCGCGGGGGGACTG 1 chr17:3846059-3846559 ( 3) ACGGCCGCCGGCTAGAGCGCCG 1 chr15:74541136-74541636 ( 63) AGGCCAGGAGCCGAGGCAGGTG 1 chr5:43120709-43121209 ( 4) CGGGGCCGCGGCCGCCCGGGTG 1 chr12:56630142-56630642 ( 37) GGACCCTGTGGCGGAGGCCGCG 1 chr6:111483710-111484210 ( 2) GGAGGGGGCACCGCGGCTCGCG 1 chr19:34734074-34734574 ( 68) CGGGGCGCCTGCGGGGACGGTG 1 chr8:94719580-94720080 ( 47) CGGGCCGCCTGCGGGGACGCGG 1 chr15:72117711-72118211 ( 72) AGAGGCGGCGGCGGAGGCAGTA 1 chr19:2945199-2945699 ( 76) CGACGAGGCCCCAGGAGGCCGG 1 chr5:134632651-134633151 ( 32) GGAGGCGGAACCTAGGGCGCTC 1 chr1:244652994-244653494 ( 41) GCCCGCGGGGGTGAGAGCGGCC 1 chr4:139555267-139555767 ( 79) GCAGCCGCGGCCCAGGCGGCAG 1 chr1:228165642-228166142 ( 8) AGACCGGGCCGCCGCGCCCCGG 1 chr10:6088650-6089150 ( 49) GCCGGCGGAGGGGAGCGTGCAG 1 chr19:39409834-39410334 ( 75) AGGAGGGGCCCCGGGGGAGCCG 1 chr3:12556726-12557226 ( 16) GCACCGGGGATCGGGCCGGCTG 1 chr2:176129362-176129862 ( 73) GGCGGAGGCATCTCGGGCCGGG 1 chr11:65919104-65919604 ( 70) AACGGCGGGGGCGGAGCGGGCG 1 chr17:7234331-7234831 ( 28) GGAGGGCGGCTGAGGAGCGCGG 1 chr21:33480022-33480522 ( 41) GGCGGCGGCCGCCCACCGGCAG 1 chr7:100479077-100479577 ( 23) CCAGGAGGGAGGGAGGGAGGAG 1 chr12:122526595-12252709 ( 66) AGTCCCGGCCGCTAGAGCGGCG 1 chr9:136109588-136110088 ( 76) GGCGCCGGGCCAGGAGCCGCTG 1 chr17:30708656-30709156 ( 70) CGGCCCGGAGTCGCCGCCCGGG 1 chr21:46286007-46286507 ( 60) CGAACCGGAAGTCGGTCCGCGG 1 chr1:109483996-109484496 ( 77) GCAGGGTGGGCTGCGAGCGGTG 1 chr16:30526749-30527249 ( 3) CCCGGAGCCCGCGGGGCTACCG 1 chr19:44212403-44212903 ( 74) AGAGGTCGCGGCCGCGGCGGAG 1 chr6:24774850-24775350 ( 78) GCGGCAGGAAGTGGGTACGCAG 1 chr19:2236189-2236689 ( 6) GCGCCACGCAGCGGAGGCGGGC 1 chr19:37370952-37371452 ( 26) GGCCCCGCGACCGAGACCCGCG 1 chr15:78873289-78873789 ( 72) GCGCCACGGGGCGGGAGAAGTG 1 chr2:169824727-169825227 ( 11) GCAGCTCGGCGCCGGGCCGCTG 1 chr2:55419708-55420208 ( 67) GGGAGGGGCGGGGAGTCGGCGG 1 chr15:75368450-75368950 ( 8) GGAGGCGCCCTCTGGACGCCGG 1 chr19:42387050-42387550 ( 65) CGCGCCGGGCTGGGGACCCGCG 1 chr19:38388231-38388731 ( 26) AGGGGACGGGGCAGGGACAGGG 1 chr5:72106831-72107331 ( 64) AGGGCCGCGAGCCAAGGGGCTG 1 chr16:30395099-30395599 ( 3) GCCGGCGGGCGGCAGCGTGCGG 1 chr6:28943421-28943921 ( 53) GGCCGAGCGGTCTAAGGCGCTG 1 chr16:22296892-22297392 ( 56) GGCCGAGCGGTCTAAGGCGCTG 1 chr19:40634424-40634924 ( 51) GCAGCCGGCTTGGGCTGCGCCG 1 chr5:134411708-134412208 ( 65) GCGCCCTCGCCCGGAGCGGCGG 1 chr11:78079601-78080101 ( 50) CGCGCCGGACTCACGGGCACGG 1 chr2:3574912-3575412 ( 76) GTCCCAGGAAGCGGCTCTGGGG 1 chr8:38386416-38386916 ( 24) GGAGCAGGATGCGGACCGAGCG 1 chr19:37251769-37252269 ( 51) AGGCCAGGACTCCCCGCCGCTG 1 chr6:143511331-143511831 ( 30) GGCGGCGGCGGCAGCAGCAGCA 1 chr19:17334585-17335085 ( 5) CGAGCGAGGACCGAGGCCGGCG 1 chr17:18625525-18626025 ( 8) GGAGGCTGGAGCTGCAGCGCCA 1 chr20:58650913-58651413 ( 3) GTGCCCCGGGGCAGGAGTGCAG 1 chr5:74766784-74767284 ( 2) GAAGCAGGAGGCGCGAGCCGCG 1 chr15:76311015-76311515 ( 19) CGACCAGCCCTCGCGCCCGCAG 1 chr19:36379213-36379713 ( 51) CCGGGAGGTCGCGGCTGCAGTG 1 chr16:78099298-78099798 ( 75) ACGGCCGGCGTCAAAGGGGCAG 1 chr16:2751934-2752434 ( 31) CGAGCCCGCAGCTGCACAGCAG 1 chr7:100429286-100429786 ( 3) AGGCGGGGGACGGGAGCTGGTG 1 chr1:244970764-244971264 ( 2) GGGGGGTGGCCTGGGTGAGGAG 1 chr10:93702424-93702924 ( 1) GCACCGTCCCCCGAGTGCGCCG 1 chr15:82540280-82540780 ( 78) GCGGAGTGGAGCGGGGGCGGCG 1 chr15:70892041-70892541 ( 32) GGCGGCCGTCTTCGGTGCGCGG 1 chr1:223846001-223846501 ( 65) CGCCGAGGAGGTGACGGCGGCA 1 chr5:177404101-177404601 ( 2) GGAGGCGCCGCCTGGGTTGGGG 1 chr6:35259449-35259949 ( 79) GCAAGCTGCGCGCGGGCGGGCG 1 chr16:30092466-30092966 ( 19) GCCACATGCGTCGGGGGAGCGG 1 chr19:58002602-58003102 ( 68) CCGGCGTCGGGCAGCGGCGCCG 1 chr6:131628062-131628562 ( 61) CGGCCCGCAAGCCGGACGAGAG 1 chr17:44689856-44690356 ( 55) CCAGCATCCCCCGAAAGCGCGG 1 chr7:129779801-129780301 ( 74) CCCGCCTGCAGCGCGGAGGCGG 1 chr5:112160514-112161014 ( 27) AGACGCCGCCGTGTGGCCGGAG 1 chr17:8120671-8121171 ( 33) AGACGCCGCCGTTCGTCGGGTG 1 chr19:39412411-39412911 ( 69) CGGGGCTCGTGTGACGGCGGCG 1 chr19:37594258-37594758 ( 1) GTCCGCGGCAGGGGCTCCAGGG 1 chr9:40991925-40992425 ( 46) GCGCCAGGGAGCAGATGCGCGC 1 chr1:35769552-35770052 ( 13) GGGGCCGGGGTAGACCCCGCTG 1 chr1:234373473-234373973 ( 67) GGAACCCGCGGCTCGGGGACAG 1 chr22:41446560-41447060 ( 9) GCCGGGGCGCGGGAAGGTGCGG 1 chr22:46053537-46054037 ( 76) CGCCGCCGAGCTCGGGCAGCAG 1 chr19:29873223-29873723 ( 66) GGTGGCTGCCCGAGGGCGGGCG 1 chr19:41262212-41262712 ( 2) ACTGGAGGGCGTCCGGGCGCTG 1 chr16:73070524-73071024 ( 71) GGGAGGGGACCGGGCGCTGGAG 1 chr13:75480686-75481186 ( 58) AGCGCCCGTCCCGGGAGGACGG 1 chr16:4944780-4945280 ( 34) GGCCCGGGCGGGTAGGGGCCTG 1 chr19:40598113-40598613 ( 79) GGGCGCGCGCCCAGACCCCGAG 1 chr19:40348252-40348752 ( 31) GCCGCCACCAGCGAGAGTGCGG 1 chr20:35954294-35954794 ( 3) GCGCGCCGACCTGGACGCAGAG 1 chr19:33373052-33373552 ( 31) GGAACGCCCCGCAGGCGGGCGG 1 chr2:241102100-241102600 ( 59) CGCGCTGGCGCTGGGAACGGCG 1 chr10:86399875-86400375 ( 72) AGGCGGCCGCGCAGCGGTGCAG 1 chrX:73944010-73944510 ( 54) GCACGACGGCTGGGCGCCGGGC 1 chr17:82106011-82106511 ( 60) GGAGGCTGCATCACGGAAGGCG 1 chr6:143450500-143451000 ( 1) GCGCGGGCAGCGGAACGCGGCG 1 chr6:87155267-87155767 ( 44) CGCCCGGCACGTGACCCCGCCG 1 chr1:1375031-1375531 ( 29) CCGCGAGGACGCCAGCGGGCGC 1 chr19:36054846-36055346 ( 53) GGCGGCGGACGCGACTCTCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.19385 E= 4.1e-016 -28 -19 109 -1385 -408 0 129 -209 77 -24 38 -308 -176 56 98 -1385 -508 53 115 -1385 34 94 -68 -350 -350 -47 128 -84 -1385 -37 155 -1385 4 53 29 -250 -13 23 68 -250 -1385 -11 118 -76 -350 135 -108 -50 -84 -57 110 -109 -4 -80 118 -508 -44 -4 107 -1385 0 -108 87 -63 -209 51 103 -508 -163 100 -15 -69 -92 -124 150 -1385 -1385 78 98 -1385 -56 20 38 -33 -308 -232 176 -1385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 148 E= 4.1e-016 0.189189 0.236486 0.574324 0.000000 0.013514 0.270270 0.662162 0.054054 0.391892 0.229730 0.351351 0.027027 0.067568 0.398649 0.533784 0.000000 0.006757 0.391892 0.601351 0.000000 0.290541 0.520270 0.168919 0.020270 0.020270 0.195946 0.655405 0.128378 0.000000 0.209459 0.790541 0.000000 0.236486 0.391892 0.331081 0.040541 0.209459 0.317568 0.432432 0.040541 0.000000 0.250000 0.614865 0.135135 0.020270 0.689189 0.128378 0.162162 0.128378 0.182432 0.581081 0.108108 0.222973 0.155405 0.614865 0.006757 0.168919 0.263514 0.567568 0.000000 0.229730 0.128378 0.493243 0.148649 0.054054 0.385135 0.554054 0.006757 0.074324 0.540541 0.243243 0.141892 0.121622 0.114865 0.763514 0.000000 0.000000 0.466216 0.533784 0.000000 0.155405 0.310811 0.351351 0.182432 0.027027 0.054054 0.918919 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSSMGGVSGCGGGGSCGSBG MEME-6 regular expression -------------------------------------------------------------------------------- [GC][GC][AGC][GC][GC][CA]G[GC][CGA][GCA][GC]CG[GA][GC][GA][GC][CG]G[GC][GC]G -------------------------------------------------------------------------------- Time 2119.81 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 width = 31 sites = 4 llr = 155 E-value = 5.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 Description -------------------------------------------------------------------------------- Simplified A a::8:8aa38a:::::::a:aa3::3:::3: pos.-specific C ::a3a3:::3::::3a::::::::a::a::: probability G ::::::::8::8:::::a:a:::a:::::8: matrix T :a:::::::::3aa8:a:::::8::8a:a:a bits 2.1 ** ** * ** * * ** * * * 1.9 *** * ** * ** ******* ** *** * 1.7 *** * ** * ** ******* ** *** * 1.5 *** * ** * ** ******* ** *** * Relative 1.3 ******** ** ***************** * Entropy 1.1 ******************************* (55.9 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel ATCACAAAGAAGTTTCTGAGAATGCTTCTGT consensus C C AC T C A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr17:26619794-26620294 - 23 9.11e-20 GAATGCAAGC ATCACAAAGAAGTTTCTGAGAATGCTTCTGT TTAGCTTTTC chr17:26885529-26886029 + 20 2.78e-18 gaatgcaatc atcacaaagcagtttctgagaatgcttctat ctagtattta chr17:25919958-25920458 - 43 8.19e-18 CAACTCAATC ATCCCAAAGAATTTTCTGAGAAAGCTTCTGT CTTCTTTTTA chr17:26603656-26604156 - 54 2.17e-17 GAATACAAAC ATCACCAAAAAGTTCCTGAGAATGCATCTGT ATAGTTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:26619794-26620294 9.1e-20 22_[-7]_47 chr17:26885529-26886029 2.8e-18 19_[+7]_50 chr17:25919958-25920458 8.2e-18 42_[-7]_27 chr17:26603656-26604156 2.2e-17 53_[-7]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCACAAAGAAGTTTCTGAGAATGCTTCTGT width=31 seqs=4 chr17:26619794-26620294 ( 23) ATCACAAAGAAGTTTCTGAGAATGCTTCTGT 1 chr17:26885529-26886029 ( 20) ATCACAAAGCAGTTTCTGAGAATGCTTCTAT 1 chr17:25919958-25920458 ( 43) ATCCCAAAGAATTTTCTGAGAAAGCTTCTGT 1 chr17:26603656-26604156 ( 54) ATCACCAAAAAGTTCCTGAGAATGCATCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 13.358 E= 5.0e-007 212 -865 -865 -865 -865 -865 -865 212 -865 188 -865 -865 171 -11 -865 -865 -865 188 -865 -865 171 -11 -865 -865 212 -865 -865 -865 212 -865 -865 -865 12 -865 147 -865 171 -11 -865 -865 212 -865 -865 -865 -865 -865 147 12 -865 -865 -865 212 -865 -865 -865 212 -865 -11 -865 171 -865 188 -865 -865 -865 -865 -865 212 -865 -865 188 -865 212 -865 -865 -865 -865 -865 188 -865 212 -865 -865 -865 212 -865 -865 -865 12 -865 -865 171 -865 -865 188 -865 -865 188 -865 -865 12 -865 -865 171 -865 -865 -865 212 -865 188 -865 -865 -865 -865 -865 212 12 -865 147 -865 -865 -865 -865 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 4 E= 5.0e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCACAAAGAAGTTTCTGAGAATGCTTCTGT MEME-7 regular expression -------------------------------------------------------------------------------- ATC[AC]C[AC]AA[GA][AC]A[GT]TT[TC]CTGAGAA[TA]GC[TA]TCT[GA]T -------------------------------------------------------------------------------- Time 2434.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTWDTTWTT MEME-8 width = 12 sites = 37 llr = 405 E-value = 7.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 12:2:62::3:: pos.-specific C ::1:::::::2: probability G :11:::3:122: matrix T 9788a45a956a bits 2.1 * 1.9 * * * 1.7 * * ** * 1.5 * * ** * Relative 1.3 * **** ** * Entropy 1.1 * **** ** * (15.8 bits) 0.8 ****** ** * 0.6 ************ 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel TTTTTATTTTTT consensus A TG AG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr19:35385770-35386270 - 84 2.08e-08 ACAGT TTTTTATTTTTT TCTGTTTCTC chr1:151494724-151495224 + 47 6.24e-08 GGGTGGGAAG TTTTTTTTTTTT TCTGCCCACT chrX:24143940-24144440 + 16 1.08e-07 ttgtctcata tttttagttttt tgtttttatt chr5:14439186-14439686 + 77 1.08e-07 TGACAGCTCT TTTTTAGTTTTT AAATTAATGG chr1:234534060-234534560 - 81 3.59e-07 CAATTGCA TTTTTTGTTTTT AGAAAATGTT chr1:226110064-226110564 + 62 5.04e-07 AGCTGCCCTT TATTTATTTATT TCAGTGGGCA chr6:52243208-52243708 - 8 5.04e-07 CTCTGATTGC TATTTATTTATT TTGTACC chr1:243230827-243231327 - 71 7.10e-07 GATTGACAGT TTTTTTTTTTCT TCTCCTTTCC chr19:40103561-40104061 - 69 8.88e-07 GTAGTTGAAA TTTTTAGTTTCT TTCTTTTTAT chr5:32367231-32367731 - 5 1.65e-06 TATTTATTTA TTTATTATTTTT GAGA chr21:16420002-16420502 + 12 2.29e-06 TTGGGTCACA TTTTTTGTTAGT GCTGAAGGCT chr3:17730409-17730909 - 51 2.48e-06 ACAACAGTAA TATTTATTTACT CATGATTTTA chr2:19667583-19668083 + 41 2.72e-06 GATTAAGGCT TTTTTAATGTTT GAAATGTAAA chr19:10976827-10977327 - 44 3.28e-06 AATTTTGTTC TTGTTATTTGTT TATTTATTTG chr2:160039517-160040017 - 3 3.62e-06 GCAGAGAGCA TGTTTATTTGTT CA chr10:50463973-50464473 - 14 3.88e-06 GGATAATCTC TTGTTTGTTTTT ATTGTGGTAA chr1:228902911-228903411 + 86 3.88e-06 CACTCCACTG TTTATATTTGGT CAT chr2:178484621-178485121 - 77 4.48e-06 AATTGTTCGA TTGATATTTATT CAGTGACTAG chr6:28790557-28791057 - 69 4.48e-06 TACAAATGAG TTTTTATATTTT GAAGAAACAC chr19:38930080-38930580 - 79 5.14e-06 TGTAGTAGGA ATTTTAGTTATT TCCCAAGTTA chr8:43124315-43124815 + 53 5.44e-06 gacaagagga tttttattgagt gcactcagac chr6:123841160-123841660 - 39 5.44e-06 TATGTCTCCA TATTTAATTACT ATGCCTTGAA chr19:35881945-35882445 - 7 5.93e-06 TTTTATTTTT ATTTTTATTTTT AGACAG chr6:27280067-27280567 + 84 5.93e-06 gcCCTGACAT TTGATAGTTTTT CTCCT chr10:74145070-74145570 + 80 5.93e-06 GCCTCCTAGA TTTATTGTTGTT ATCCTTAGT chr15:70062320-70062820 + 50 6.54e-06 AAACTAAGTA TTTTTTATTGCT TCGGCTAGGC chr17:8226764-8227264 - 6 6.54e-06 AGTGGGTGGC TTTTTTTTGTGT GTGTT chr21:36122970-36123470 - 66 7.06e-06 TGTTAGTGGC TTCATATTTTTT TATTATTTAT chr8:16825877-16826377 - 30 7.06e-06 AAGGAGAGGG TTTTTAATGTGT GTGTGTGTGT chr10:112793290-11279379 + 74 9.18e-06 AATCTCTCTT TTGTTTGTTTGT CTTGTGGAAC chr2:175233420-175233920 + 29 1.07e-05 ACATAATCCT TATTTAATTGCT ATTTCCAAAC chr17:7484230-7484730 + 39 1.14e-05 GGAACCCGGT TACTTATTTATT CGTTACCCTT chr5:140718668-140719168 - 30 1.32e-05 CTATCTCCGG ATTATATTTTCT TGACTGGTGA chr1:224623774-224624274 - 51 1.43e-05 CAGAGGGCTT TGTTTTATTAGT CTCCGTGGTT chr10:2882547-2883047 + 48 1.43e-05 AACCTGTTAG TGTATAATTTGT TGCACAGGAT chr19:49817471-49817971 - 88 1.88e-05 T TGTATTTTTAGT AGAGAAAGAG chr8:37703319-37703819 + 60 2.12e-05 TCTATTTTCC TATTGATTTATT GCAGCCGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35385770-35386270 2.1e-08 83_[-8]_5 chr1:151494724-151495224 6.2e-08 46_[+8]_42 chrX:24143940-24144440 1.1e-07 15_[+8]_73 chr5:14439186-14439686 1.1e-07 76_[+8]_12 chr1:234534060-234534560 3.6e-07 80_[-8]_8 chr1:226110064-226110564 5e-07 61_[+8]_27 chr6:52243208-52243708 5e-07 7_[-8]_81 chr1:243230827-243231327 7.1e-07 70_[-8]_18 chr19:40103561-40104061 8.9e-07 68_[-8]_20 chr5:32367231-32367731 1.6e-06 4_[-8]_84 chr21:16420002-16420502 2.3e-06 11_[+8]_77 chr3:17730409-17730909 2.5e-06 50_[-8]_38 chr2:19667583-19668083 2.7e-06 40_[+8]_48 chr19:10976827-10977327 3.3e-06 43_[-8]_45 chr2:160039517-160040017 3.6e-06 2_[-8]_86 chr10:50463973-50464473 3.9e-06 13_[-8]_75 chr1:228902911-228903411 3.9e-06 85_[+8]_3 chr2:178484621-178485121 4.5e-06 76_[-8]_12 chr6:28790557-28791057 4.5e-06 68_[-8]_20 chr19:38930080-38930580 5.1e-06 78_[-8]_10 chr8:43124315-43124815 5.4e-06 52_[+8]_36 chr6:123841160-123841660 5.4e-06 38_[-8]_50 chr19:35881945-35882445 5.9e-06 6_[-8]_82 chr6:27280067-27280567 5.9e-06 83_[+8]_5 chr10:74145070-74145570 5.9e-06 79_[+8]_9 chr15:70062320-70062820 6.5e-06 49_[+8]_39 chr17:8226764-8227264 6.5e-06 5_[-8]_83 chr21:36122970-36123470 7.1e-06 65_[-8]_23 chr8:16825877-16826377 7.1e-06 29_[-8]_59 chr10:112793290-11279379 9.2e-06 73_[+8]_15 chr2:175233420-175233920 1.1e-05 28_[+8]_60 chr17:7484230-7484730 1.1e-05 38_[+8]_50 chr5:140718668-140719168 1.3e-05 29_[-8]_59 chr1:224623774-224624274 1.4e-05 50_[-8]_38 chr10:2882547-2883047 1.4e-05 47_[+8]_41 chr19:49817471-49817971 1.9e-05 87_[-8]_1 chr8:37703319-37703819 2.1e-05 59_[+8]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTWDTTWTT width=12 seqs=37 chr19:35385770-35386270 ( 84) TTTTTATTTTTT 1 chr1:151494724-151495224 ( 47) TTTTTTTTTTTT 1 chrX:24143940-24144440 ( 16) TTTTTAGTTTTT 1 chr5:14439186-14439686 ( 77) TTTTTAGTTTTT 1 chr1:234534060-234534560 ( 81) TTTTTTGTTTTT 1 chr1:226110064-226110564 ( 62) TATTTATTTATT 1 chr6:52243208-52243708 ( 8) TATTTATTTATT 1 chr1:243230827-243231327 ( 71) TTTTTTTTTTCT 1 chr19:40103561-40104061 ( 69) TTTTTAGTTTCT 1 chr5:32367231-32367731 ( 5) TTTATTATTTTT 1 chr21:16420002-16420502 ( 12) TTTTTTGTTAGT 1 chr3:17730409-17730909 ( 51) TATTTATTTACT 1 chr2:19667583-19668083 ( 41) TTTTTAATGTTT 1 chr19:10976827-10977327 ( 44) TTGTTATTTGTT 1 chr2:160039517-160040017 ( 3) TGTTTATTTGTT 1 chr10:50463973-50464473 ( 14) TTGTTTGTTTTT 1 chr1:228902911-228903411 ( 86) TTTATATTTGGT 1 chr2:178484621-178485121 ( 77) TTGATATTTATT 1 chr6:28790557-28791057 ( 69) TTTTTATATTTT 1 chr19:38930080-38930580 ( 79) ATTTTAGTTATT 1 chr8:43124315-43124815 ( 53) TTTTTATTGAGT 1 chr6:123841160-123841660 ( 39) TATTTAATTACT 1 chr19:35881945-35882445 ( 7) ATTTTTATTTTT 1 chr6:27280067-27280567 ( 84) TTGATAGTTTTT 1 chr10:74145070-74145570 ( 80) TTTATTGTTGTT 1 chr15:70062320-70062820 ( 50) TTTTTTATTGCT 1 chr17:8226764-8227264 ( 6) TTTTTTTTGTGT 1 chr21:36122970-36123470 ( 66) TTCATATTTTTT 1 chr8:16825877-16826377 ( 30) TTTTTAATGTGT 1 chr10:112793290-11279379 ( 74) TTGTTTGTTTGT 1 chr2:175233420-175233920 ( 29) TATTTAATTGCT 1 chr17:7484230-7484730 ( 39) TACTTATTTATT 1 chr5:140718668-140719168 ( 30) ATTATATTTTCT 1 chr1:224623774-224624274 ( 51) TGTTTTATTAGT 1 chr10:2882547-2883047 ( 48) TGTATAATTTGT 1 chr19:49817471-49817971 ( 88) TGTATTTTTAGT 1 chr8:37703319-37703819 ( 60) TATTGATTTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 12.2983 E= 7.8e-007 -150 -1185 -1185 200 -28 -1185 -132 161 -1185 -232 -100 182 8 -1185 -1185 172 -1185 -1185 -332 208 150 -1185 -1185 61 8 -1185 0 108 -308 -1185 -1185 208 -1185 -1185 -132 196 50 -1185 -74 116 -1185 -52 -15 131 -1185 -1185 -1185 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 37 E= 7.8e-007 0.081081 0.000000 0.000000 0.918919 0.189189 0.000000 0.108108 0.702703 0.000000 0.054054 0.135135 0.810811 0.243243 0.000000 0.000000 0.756757 0.000000 0.000000 0.027027 0.972973 0.648649 0.000000 0.000000 0.351351 0.243243 0.000000 0.270270 0.486486 0.027027 0.000000 0.000000 0.972973 0.000000 0.000000 0.108108 0.891892 0.324324 0.000000 0.162162 0.513514 0.000000 0.189189 0.243243 0.567568 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTWDTTWTT MEME-8 regular expression -------------------------------------------------------------------------------- TTT[TA]T[AT][TGA]TT[TA][TG]T -------------------------------------------------------------------------------- Time 2747.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGGGCGACAGAGTGAGACTC MEME-9 width = 22 sites = 7 llr = 166 E-value = 2.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::1:::19:a:7::1a3a::: pos.-specific C aa:::371:a::::3::::a3a probability G :::9a7:61::93a:9:7:::: matrix T ::a:::31:::1::7:::::7: bits 2.1 * * * * 1.9 *** * ** * * ** * 1.7 *** * ** * * ** * 1.5 *** * *** * * ** * Relative 1.3 ***** ********* **** Entropy 1.1 ******* ************** (34.3 bits) 0.8 ******* ************** 0.6 ******* ************** 0.4 ******* ************** 0.2 ********************** 0.0 ---------------------- Multilevel CCTGGGCGACAGAGTGAGACTC consensus CT G C A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr16:30570500-30571000 - 77 2.34e-13 AG CCTGGGTGACAGAGTGAGACTC CGTCTCAAAA chr6:90453827-90454327 - 79 7.78e-13 . CCTGGGCTACAGAGTGAGACTC CATCTCAGAT chr19:36379213-36379713 - 2 5.90e-12 TGCACTCCAG CCTGGGCGACAGAGTAAGACCC T chr19:37918640-37919140 + 3 8.52e-12 ag cctgggcggcagagcgagactc ggtctcaaaa chr1:225654696-225655196 + 1 1.47e-11 . cctaggtgacagagcgagactc catctaaaaa chr19:49817471-49817971 + 59 2.87e-11 tcgagaacag cctggcccacagggtgaaactc tttctctact chr6:30907494-30907994 - 17 1.39e-10 TCGAGACCAT CCTGGCCAACATGGTGAAACCC CCGTCTTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30570500-30571000 2.3e-13 76_[-9]_2 chr6:90453827-90454327 7.8e-13 78_[-9] chr19:36379213-36379713 5.9e-12 1_[-9]_77 chr19:37918640-37919140 8.5e-12 2_[+9]_76 chr1:225654696-225655196 1.5e-11 [+9]_78 chr19:49817471-49817971 2.9e-11 58_[+9]_20 chr6:30907494-30907994 1.4e-10 16_[-9]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGGGCGACAGAGTGAGACTC width=22 seqs=7 chr16:30570500-30571000 ( 77) CCTGGGTGACAGAGTGAGACTC 1 chr6:90453827-90454327 ( 79) CCTGGGCTACAGAGTGAGACTC 1 chr19:36379213-36379713 ( 2) CCTGGGCGACAGAGTAAGACCC 1 chr19:37918640-37919140 ( 3) CCTGGGCGGCAGAGCGAGACTC 1 chr1:225654696-225655196 ( 1) CCTAGGTGACAGAGCGAGACTC 1 chr19:49817471-49817971 ( 59) CCTGGCCCACAGGGTGAAACTC 1 chr6:30907494-30907994 ( 17) CCTGGCCAACATGGTGAAACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.5689 E= 2.4e-006 -945 188 -945 -945 -945 188 -945 -945 -945 -945 -945 212 -68 -945 166 -945 -945 -945 188 -945 -945 8 140 -945 -945 140 -945 32 -68 -92 108 -68 190 -945 -92 -945 -945 188 -945 -945 212 -945 -945 -945 -945 -945 166 -68 164 -945 8 -945 -945 -945 188 -945 -945 8 -945 164 -68 -945 166 -945 212 -945 -945 -945 32 -945 140 -945 212 -945 -945 -945 -945 188 -945 -945 -945 8 -945 164 -945 188 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 7 E= 2.4e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.714286 0.000000 0.285714 0.142857 0.142857 0.571429 0.142857 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.714286 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.142857 0.000000 0.857143 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGGCGACAGAGTGAGACTC MEME-9 regular expression -------------------------------------------------------------------------------- CCTGG[GC][CT]GACAG[AG]G[TC]GA[GA]AC[TC]C -------------------------------------------------------------------------------- Time 3055.61 secs. ******************************************************************************** ******************************************************************************** MOTIF ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 width = 50 sites = 7 llr = 245 E-value = 5.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 Description -------------------------------------------------------------------------------- Simplified A 9:17:1::6:31331:3341:1:61:9:3733::91::39313:a::349 pos.-specific C ::31::773:34::3:76113:1::3::::1:7a1::61:136a:116:: probability G :34:::::1::34411::31::63:7:171::1::3433:::1:::1:3: matrix T 1711a933:a413349:11679319:19:1671::6613166:::97131 bits 2.1 * * * 1.9 * * * ** 1.7 * * * ** 1.5 * ** * * * * ** ** * *** * Relative 1.3 ** ** * * ** * ** * ** * *** * Entropy 1.1 ** **** * ** ** ***** * ** * * *** * (50.5 bits) 0.8 ** ***** * ** ** ****** **** * * **** * 0.6 ** ******* *** ****************** ********* * 0.4 ** ******** ** *** ******************* *********** 0.2 ************************************** *********** 0.0 -------------------------------------------------- Multilevel ATGATTCCATTCGGTTCCATTTGATGATGATTCCATTCAATTCCATTCAA consensus GC TTC AGAAC AAG C TG C A AA GGGG ACA AG sequence C TT T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr1_KI270709v1_random:7 + 50 1.80e-27 CCATTCTATG ATGATTCCATTCATTTCCATCTGATGATGATTCCATTCGATTCCATTCAA T chr1:143264418-143264918 - 39 5.72e-25 CCATTTGATG TTGATTCCATTCGATTCCATTTGATGATGATTCCATGCAATTCCATTAGA TGATGACTCC chr1:125179935-125180435 + 50 2.13e-20 ATTCCATTCG ATAATTCCGTTTTTTTCCGTTTGGTGTTGATACCATTCGATTCCATTCGA T chr2:232473367-232473867 - 36 7.63e-15 GTGCTTCATA AGCCTTCTCTCGGGCTCACCCTGGTGATAAATCCAGGCTTACCCATTCTT CATGAAAGGA chr6:111481467-111481967 + 45 2.94e-14 CCTAAGATGC ATTATTTCCTAGAACTCCATTATTTCATGGAAGCAGTTCAAAGCATGCAA AAAAGC chr21:29217670-29218170 + 19 6.16e-14 CTCATATGAC AGCATATCATCAGGATATGGTTTATGAGATTTTCCTGGAATTACATCATA TTGATGACAC chr10:112793290-11279379 + 16 7.45e-14 GCATATTATA ATGTTTCTATACTGGGAATATTCAACATGACTCCAATGTACCACACTTAA TCTCTCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1_KI270709v1_random:7 1.8e-27 49_[+10]_1 chr1:143264418-143264918 5.7e-25 38_[-10]_12 chr1:125179935-125180435 2.1e-20 49_[+10]_1 chr2:232473367-232473867 7.6e-15 35_[-10]_15 chr6:111481467-111481967 2.9e-14 44_[+10]_6 chr21:29217670-29218170 6.2e-14 18_[+10]_32 chr10:112793290-11279379 7.5e-14 15_[+10]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA width=50 seqs=7 chr1_KI270709v1_random:7 ( 50) ATGATTCCATTCATTTCCATCTGATGATGATTCCATTCGATTCCATTCAA 1 chr1:143264418-143264918 ( 39) TTGATTCCATTCGATTCCATTTGATGATGATTCCATGCAATTCCATTAGA 1 chr1:125179935-125180435 ( 50) ATAATTCCGTTTTTTTCCGTTTGGTGTTGATACCATTCGATTCCATTCGA 1 chr2:232473367-232473867 ( 36) AGCCTTCTCTCGGGCTCACCCTGGTGATAAATCCAGGCTTACCCATTCTT 1 chr6:111481467-111481967 ( 45) ATTATTTCCTAGAACTCCATTATTTCATGGAAGCAGTTCAAAGCATGCAA 1 chr21:29217670-29218170 ( 19) AGCATATCATCAGGATATGGTTTATGAGATTTTCCTGGAATTACATCATA 1 chr10:112793290-11279379 ( 16) ATGTTTCTATACTGGGAATATTCAACATGACTCCAATGTACCACACTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30600 bayes= 12.6994 E= 5.7e-006 190 -945 -945 -68 -945 -945 8 164 -68 8 66 -68 164 -92 -945 -68 -945 -945 -945 212 -68 -945 -945 190 -945 140 -945 32 -945 140 -945 32 132 8 -92 -945 -945 -945 -945 212 32 8 -945 90 -68 66 8 -68 32 -945 66 32 32 -945 66 32 -68 8 -92 90 -945 -945 -92 190 32 140 -945 -945 32 108 -945 -68 90 -92 8 -68 -68 -92 -92 132 -945 8 -945 164 -68 -945 -945 190 -945 -92 108 32 132 -945 8 -68 -68 -945 -945 190 -945 8 140 -945 190 -945 -945 -68 -945 -945 -92 190 32 -945 140 -945 164 -945 -92 -68 32 -92 -945 132 32 -945 -945 164 -945 140 -92 -68 -945 188 -945 -945 190 -92 -945 -945 -68 -945 8 132 -945 -945 66 132 -945 108 8 -68 32 -92 8 32 190 -945 -945 -68 32 -92 -945 132 -68 8 -945 132 32 108 -92 -945 -945 188 -945 -945 212 -945 -945 -945 -945 -92 -945 190 -945 -92 -92 164 32 108 -945 -68 90 -945 8 32 190 -945 -945 -68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 7 E= 5.7e-006 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 0.285714 0.714286 0.142857 0.285714 0.428571 0.142857 0.714286 0.142857 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.000000 0.857143 0.000000 0.714286 0.000000 0.285714 0.000000 0.714286 0.000000 0.285714 0.571429 0.285714 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.285714 0.000000 0.428571 0.142857 0.428571 0.285714 0.142857 0.285714 0.000000 0.428571 0.285714 0.285714 0.000000 0.428571 0.285714 0.142857 0.285714 0.142857 0.428571 0.000000 0.000000 0.142857 0.857143 0.285714 0.714286 0.000000 0.000000 0.285714 0.571429 0.000000 0.142857 0.428571 0.142857 0.285714 0.142857 0.142857 0.142857 0.142857 0.571429 0.000000 0.285714 0.000000 0.714286 0.142857 0.000000 0.000000 0.857143 0.000000 0.142857 0.571429 0.285714 0.571429 0.000000 0.285714 0.142857 0.142857 0.000000 0.000000 0.857143 0.000000 0.285714 0.714286 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 0.142857 0.857143 0.285714 0.000000 0.714286 0.000000 0.714286 0.000000 0.142857 0.142857 0.285714 0.142857 0.000000 0.571429 0.285714 0.000000 0.000000 0.714286 0.000000 0.714286 0.142857 0.142857 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.142857 0.000000 0.285714 0.571429 0.000000 0.000000 0.428571 0.571429 0.000000 0.571429 0.285714 0.142857 0.285714 0.142857 0.285714 0.285714 0.857143 0.000000 0.000000 0.142857 0.285714 0.142857 0.000000 0.571429 0.142857 0.285714 0.000000 0.571429 0.285714 0.571429 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.142857 0.142857 0.714286 0.285714 0.571429 0.000000 0.142857 0.428571 0.000000 0.285714 0.285714 0.857143 0.000000 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA MEME-10 regular expression -------------------------------------------------------------------------------- A[TG][GC]ATT[CT][CT][AC]T[TAC][CG][GAT][GAT][TC]T[CA][CA][AG]T[TC]T[GT][AG]T[GC]AT[GA]A[TA][TA]CCA[TG][TG][CG][AGT]A[TA][TC][CA]CATT[CA][AGT]A -------------------------------------------------------------------------------- Time 3365.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:27695207-27695707 9.02e-01 100 chr19:33389946-33390446 3.92e-01 100 chr20:33401332-33401832 1.00e+00 100 chr16:81730087-81730587 9.66e-01 100 chr4:77927999-77928499 7.82e-02 100 chr16:89816749-89817249 3.38e-01 55_[-4(1.48e-05)]_14 chr19:36127586-36128086 3.06e-01 15_[+5(5.50e-05)]_56 chr6:28817015-28817515 2.59e-03 28_[-3(1.46e-08)]_50 chr14:36835014-36835514 6.03e-01 100 chr22:36528821-36529321 9.98e-01 100 chr5:158451580-158452080 6.43e-01 100 chr21:33491586-33492086 9.99e-01 100 chr10:120851017-12085151 5.66e-01 100 chr17:58391399-58391899 1.74e-02 63_[-2(4.27e-06)]_21 chr5:170755621-170756121 4.75e-02 40_[-2(2.52e-07)]_44 chr17:38667059-38667559 6.76e-12 1_[+1(4.35e-16)]_20_[-8(9.05e-05)]_\ 20 chr1:160260926-160261426 9.04e-04 21_[+2(4.27e-06)]_7_[-7(5.12e-05)]_\ 25 chr17:7484230-7484730 6.07e-03 38_[+8(1.14e-05)]_50 chr17:16216901-16217401 7.11e-01 100 chr1:36464140-36464640 3.18e-01 100 chr6:149546022-149546522 2.00e-02 100 chr1:184029111-184029611 5.62e-02 24_[+2(1.28e-07)]_60 chr20:41059174-41059674 9.79e-26 35_[+1(8.17e-31)]_18 chr1:234700156-234700656 5.71e-03 35_[-1(1.20e-06)]_18 chr20:53609985-53610485 3.82e-01 100 chr16:21514951-21515451 2.57e-23 25_[+1(1.07e-28)]_28 chr2:224848400-224848900 1.25e-01 100 chr5:134632651-134633151 1.21e-01 31_[-6(2.10e-05)]_47 chr1:235910458-235910958 5.14e-01 100 chr13:50081500-50082000 1.67e-01 31_[-6(8.95e-06)]_47 chr1:17207937-17208437 9.82e-01 100 chr19:30029365-30029865 7.01e-04 37_[-1(7.81e-07)]_16 chr19:36054846-36055346 5.79e-01 15_[-6(3.29e-05)]_63 chr1:35769552-35770052 7.27e-01 100 chr5:93582455-93582955 1.25e-04 4_[+1(3.93e-06)]_49 chr1:50882375-50882875 3.35e-25 26_[+1(8.17e-31)]_27 chr22:29267377-29267877 5.31e-01 100 chr6:158999835-159000335 8.54e-01 100 chr1:230868132-230868632 9.35e-01 100 chr21:16420002-16420502 1.22e-03 11_[+8(2.29e-06)]_46_[+2(8.60e-07)]_\ 15 chr6:15735596-15736096 5.85e-01 100 chr21:26798535-26799035 4.38e-01 100 chr1:40257940-40258440 6.15e-01 100 chr19:44024513-44025013 2.21e-01 100 chr19:11089372-11089872 8.24e-01 100 chr21:46286007-46286507 7.21e-01 59_[-6(3.29e-05)]_19 chr19:40716843-40717343 4.09e-01 47_[+6(1.30e-05)]_31 chr15:75368450-75368950 3.96e-01 7_[-6(4.08e-05)]_71 chr17:79839723-79840223 3.93e-01 41_[-6(2.24e-06)]_37 chr6:27519276-27519776 1.34e-09 54_[-4(1.57e-17)]_15 chr12:124914605-12491510 8.73e-02 100 chr13:75480686-75481186 7.38e-01 100 chr5:32367231-32367731 1.00e-15 4_[-8(1.65e-06)]_2_[+1(1.48e-20)]_\ 35 chr17:39154279-39154779 8.54e-06 20_[-3(6.68e-10)]_58 chr1:236142334-236142834 1.74e-01 59_[+6(3.47e-06)]_19 chr1:68384242-68384742 4.39e-02 6_[-7(8.29e-05)]_63 chr19:2945199-2945699 4.48e-01 75_[+6(2.10e-05)]_3 chr17:8120671-8121171 6.47e-06 55_[-4(1.99e-13)]_14 chr19:40444301-40444801 9.53e-02 11_[+6(1.65e-06)]_67 chr16:71426300-71426800 5.64e-04 34_[+3(3.43e-09)]_44 chr6:27213572-27214072 3.05e-01 100 chr7:116762889-116763389 2.40e-01 100 chr12:56103842-56104342 1.76e-01 67_[-9(3.09e-07)]_11 chr8:125273796-125274296 9.89e-01 100 chr19:37779602-37780102 7.47e-01 100 chr5:72106831-72107331 1.38e-01 63_[-6(4.53e-05)]_15 chr15:72117711-72118211 6.38e-02 71_[-6(2.10e-05)]_7 chr1:229625971-229626471 2.34e-01 4_[-6(4.60e-06)]_74 chr4:186216633-186217133 5.29e-04 74_[-2(2.25e-07)]_10 chr2:175233420-175233920 1.01e-02 28_[+8(1.07e-05)]_60 chr6:123841160-123841660 3.90e-02 38_[-8(5.44e-06)]_50 chr13:42720353-42720853 5.61e-01 100 chr17:13887990-13888490 2.27e-03 53_[-2(5.79e-08)]_31 chr10:112793290-11279379 2.16e-10 15_[+10(7.45e-14)]_35 chr19:32398396-32398896 7.30e-13 3_[+1(2.07e-15)]_50 chr1:161621372-161621872 8.10e-02 100 chr13:100176717-10017721 4.15e-02 20_[+2(3.23e-06)]_64 chr19:40919514-40920014 9.19e-01 100 chr19:38729608-38730108 6.46e-01 100 chr17:30708656-30709156 5.76e-01 69_[-6(3.29e-05)]_9 chr15:65868893-65869393 8.12e-09 7_[+4(1.57e-17)]_62 chr1:27490243-27490743 3.94e-01 100 chr2:88627772-88628272 8.45e-01 100 chr10:2882547-2883047 6.04e-03 47_[+8(1.43e-05)]_41 chr5:74766784-74767284 1.21e-01 1_[+6(6.80e-05)]_77 chr19:33381314-33381814 1.92e-01 100 chr1:228165642-228166142 2.86e-01 7_[-6(2.35e-05)]_71 chr16:22296892-22297392 3.58e-02 55_[+6(5.02e-05)]_23 chr6:36423534-36424034 1.06e-01 100 chr5:139489856-139490356 1.16e-27 28_[-1(8.17e-31)]_25 chr12:42215708-42216208 1.73e-25 19_[+1(8.17e-31)]_34 chr15:74541136-74541636 5.36e-01 62_[+6(1.47e-05)]_16 chr2:160039517-160040017 1.02e-03 2_[-8(3.62e-06)]_41_[-2(1.96e-06)]_\ 29 chr6:107459107-107459607 4.83e-01 100 chr17:3846059-3846559 3.54e-01 2_[+6(1.47e-05)]_76 chr5:112160514-112161014 2.32e-01 75_[-6(9.99e-05)]_3 chr19:30870835-30871335 9.16e-02 29_[-2(1.02e-06)]_55 chr6:33101129-33101629 6.46e-01 100 chr22:36369741-36370241 2.31e-03 28_[+1(5.43e-06)]_25 chr22:30356537-30357037 1.61e-01 11_[+6(1.74e-07)]_67 chr12:120646975-12064747 4.58e-04 48_[+2(5.68e-10)]_36 chr6:159726788-159727288 1.30e-01 32_[+6(1.02e-05)]_46 chr6:116100723-116101223 4.34e-01 100 chr7:129779801-129780301 6.53e-01 100 chr1:240985718-240986218 5.92e-23 28_[+1(5.17e-29)]_25 chr6:49541052-49541552 8.70e-02 35_[-1(4.43e-05)]_18 chr1:121016672-121017172 1.18e-08 11_[-5(8.25e-15)]_60 chr1:20486358-20486858 5.76e-01 100 chr10:74145070-74145570 2.19e-03 28_[-2(2.00e-05)]_35_[+8(5.93e-06)]_\ 9 chr1:25998144-25998644 5.59e-01 100 chr5:32530802-32531302 1.92e-03 4_[-3(8.00e-09)]_74 chr11:78079601-78080101 3.29e-01 49_[+6(5.57e-05)]_29 chr10:132700531-13270103 8.39e-02 100 chr6:111481467-111481967 1.02e-06 44_[+10(2.94e-14)]_6 chr6:26311545-26312045 1.57e-16 10_[-3(4.19e-08)]_8_[+4(7.20e-19)]_\ 29 chr2:99154904-99155404 7.24e-02 33_[-2(1.59e-05)]_51 chr17:73474213-73474713 5.54e-03 69_[-2(4.59e-07)]_15 chr10:92662789-92663289 1.72e-01 100 chr2:177263404-177263904 7.83e-01 100 chr19:44072037-44072537 2.96e-02 23_[-5(4.74e-05)]_48 chr20:57579939-57580439 6.59e-01 100 chr5:36928909-36929409 5.46e-02 34_[-1(4.28e-05)]_19 chr6:31795678-31796178 9.45e-02 2_[+6(7.86e-06)]_76 chr5:172437467-172437967 5.19e-03 39_[+2(3.63e-06)]_45 chr19:45478371-45478871 3.85e-01 100 chr22:20117220-20117720 1.16e-01 74_[+3(8.12e-05)]_4 chr6:27280067-27280567 3.96e-12 11_[-3(1.49e-09)]_9_[+4(1.21e-11)]_\ 10_[+8(5.93e-06)]_5 chr6:27902791-27903291 8.35e-02 100 chr19:37719200-37719700 4.26e-02 10_[-9(1.18e-05)]_6_[-6(4.00e-06)]_\ 40 chr19:1383520-1384020 8.95e-01 100 chr22:41446560-41447060 9.63e-02 100 chr19:58182493-58182993 2.12e-01 100 chr5:14439186-14439686 7.27e-04 18_[+1(2.27e-05)]_11_[+8(1.08e-07)]_\ 12 chr2:63064129-63064629 1.55e-04 64_[+2(4.12e-09)]_20 chr20:58650913-58651413 4.17e-01 2_[+6(6.80e-05)]_76 chr3:61560636-61561136 9.36e-01 100 chr1:154558642-154559142 2.97e-01 100 chr15:89893828-89894328 8.46e-01 100 chr15:68605082-68605582 2.84e-02 100 chr13:44917710-44918210 1.08e-10 25_[-3(5.07e-09)]_8_[+4(7.64e-11)]_\ 14 chr19:1853306-1853806 9.96e-01 100 chr12:65624477-65624977 3.16e-03 49_[-2(2.56e-08)]_35 chr5:32157751-32158251 8.10e-23 27_[+1(2.19e-27)]_26 chr19:39125927-39126427 3.73e-02 100 chr1:228082170-228082670 4.01e-01 100 chr2:42132884-42133384 6.29e-01 100 chr6:28810318-28810818 2.27e-01 14_[+7(2.81e-05)]_55 chr19:13731083-13731583 1.41e-01 100 chr19:49817471-49817971 1.44e-10 36_[+3(9.10e-08)]_[+9(2.87e-11)]_7_\ [-8(1.88e-05)]_1 chr10:44752788-44753288 6.19e-02 21_[+8(8.35e-05)]_67 chr5:65035526-65036026 2.79e-01 100 chr13:98507148-98507648 1.39e-03 4_[+9(9.96e-05)]_11_[+2(9.75e-08)]_\ 47 chr17:41738007-41738507 1.19e-01 100 chr6:21264075-21264575 1.24e-01 100 chr1:225777745-225778245 8.12e-01 100 chr16:46848717-46849217 1.98e-26 24_[+1(2.33e-29)]_29 chr17:8226764-8227264 3.84e-07 5_[-8(6.54e-06)]_18_[-3(1.07e-11)]_\ 43 chr19:32345338-32345838 2.45e-01 22_[-6(3.01e-06)]_56 chr16:3401115-3401615 4.89e-01 100 chr5:140711057-140711557 9.25e-02 100 chr20:50165970-50166470 3.24e-01 100 chr15:92811213-92811713 3.11e-02 51_[+1(4.07e-05)]_2 chr1:64039556-64040056 3.05e-01 13_[-1(4.21e-05)]_40 chr12:124927648-12492814 9.30e-05 3_[-3(1.19e-09)]_9_[+4(6.58e-05)]_\ 35 chr3:51538445-51538945 4.79e-01 22_[+6(5.27e-06)]_14_[+6(7.50e-05)]_\ 20 chr2:19667583-19668083 2.99e-05 2_[+7(3.90e-06)]_7_[+8(2.72e-06)]_\ 48 chr10:97318905-97319405 4.72e-01 100 chr19:29467750-29468250 7.00e-01 100 chr12:64222271-64222771 9.73e-01 100 chr15:82540280-82540780 4.25e-01 77_[+6(9.09e-05)]_1 chr1:214439446-214439946 2.91e-01 100 chr6:28081232-28081732 4.54e-01 100 chr2:86440799-86441299 2.82e-02 42_[-7(6.42e-05)]_27 chr8:21954402-21954902 4.24e-23 23_[+1(2.51e-17)]_30 chr6:138109218-138109718 2.76e-01 48_[-1(5.06e-05)]_5 chr10:86399875-86400375 7.96e-01 100 chr6:31736140-31736640 1.17e-03 [+6(1.30e-05)]_21_[-9(4.66e-05)]_35 chr16:29816019-29816519 9.85e-01 100 chr13:112849467-11284996 4.37e-04 41_[-2(1.45e-07)]_43 chr17:44689856-44690356 3.75e-01 100 chr10:92839037-92839537 9.88e-03 45_[+2(5.79e-08)]_39 chr17:58822099-58822599 1.92e-26 27_[-1(8.17e-31)]_26 chr17:32341976-32342476 8.32e-01 100 chr19:49118738-49119238 6.45e-01 100 chr19:4400520-4401020 1.39e-01 100 chr17:8222047-8222547 5.32e-03 29_[+4(1.81e-05)]_40 chr1:77888802-77889302 1.51e-01 100 chr4:110904674-110905174 2.54e-01 53_[-1(7.38e-05)] chr9:14209260-14209760 9.10e-03 40_[-2(4.17e-07)]_44 chr6:43059517-43060017 3.65e-01 100 chr5:32193539-32194039 5.12e-02 47_[-2(8.22e-05)]_21_[+2(7.65e-05)] chr19:40645875-40646375 7.14e-02 100 chr9:136109588-136110088 1.03e-01 44_[-2(6.90e-05)]_15_[+6(2.95e-05)]_\ 3 chr17:34981746-34982246 2.35e-01 100 chr17:18625525-18626025 7.05e-02 7_[-6(6.80e-05)]_39_[+9(7.63e-05)]_\ 10 chr6:131909594-131910094 4.69e-03 49_[-1(2.48e-05)]_4 chr1:100132687-100133187 5.99e-01 100 chr22:41468693-41469193 2.06e-01 100 chr1:151494724-151495224 4.09e-04 46_[+8(6.24e-08)]_42 chr17:21457036-21457536 4.25e-01 100 chr17:8173046-8173546 3.33e-03 38_[+1(3.71e-06)]_15 chr16:73070524-73071024 4.96e-01 100 chr5:90529156-90529656 2.17e-01 100 chr19:50024980-50025480 1.91e-01 18_[+6(1.02e-05)]_60 chr10:72354647-72355147 1.01e-01 74_[+6(1.92e-06)]_4 chr1:234685976-234686476 4.66e-03 47_[+1(4.50e-05)]_6 chr1:161540073-161540573 1.21e-03 10_[+3(1.69e-07)]_68 chr19:41262212-41262712 2.75e-01 100 chr10:125768169-12576866 6.36e-02 19_[+5(5.85e-05)]_52 chr20:45934590-45935090 5.86e-02 78_[+6(1.03e-06)] chr21:31604641-31605141 8.47e-02 100 chr5:35617447-35617947 9.29e-01 100 chr2:158953799-158954299 9.69e-02 16_[+2(3.84e-06)]_68 chr2:241102100-241102600 4.28e-01 22_[-6(5.57e-05)]_56 chr19:40598113-40598613 7.08e-01 44_[-6(9.09e-05)]_34 chr2:55419708-55420208 7.39e-01 66_[-6(4.08e-05)]_12 chr18:35497712-35498212 6.87e-01 100 chr19:38388231-38388731 7.41e-01 25_[-6(4.53e-05)]_53 chr5:88516240-88516740 3.83e-02 17_[+1(9.09e-05)]_36 chr8:94719580-94720080 2.71e-01 46_[+6(2.10e-05)]_32 chr4:139555267-139555767 1.03e-03 5_[+3(5.87e-08)]_51_[-6(2.35e-05)] chr12:6753055-6753555 7.37e-01 100 chr15:72968490-72968990 2.40e-03 4_[-2(4.59e-07)]_80 chr6:28790557-28791057 8.39e-04 68_[-8(4.48e-06)]_20 chr19:29873223-29873723 4.89e-01 100 chr19:58002602-58003102 4.56e-01 100 chr6:28943421-28943921 3.04e-05 9_[-3(2.29e-09)]_21_[-6(5.02e-05)]_\ 26 chr19:2236189-2236689 6.84e-01 5_[-6(3.66e-05)]_73 chr6:44313092-44313592 5.75e-01 100 chr16:78099298-78099798 3.48e-01 74_[-6(7.50e-05)]_4 chr19:38849469-38849969 1.43e-02 29_[-6(4.07e-08)]_11_[-6(5.23e-07)]_\ 16 chr22:20564212-20564712 8.77e-01 100 chr16:80982558-80983058 9.18e-02 50_[+1(2.48e-05)]_3 chr8:16825877-16826377 2.58e-05 29_[-8(7.06e-06)]_36_[+2(2.40e-06)]_\ 7 chr7:112572620-112573120 1.20e-04 53_[+2(7.14e-05)]_2_[-2(1.12e-07)]_\ 13 chr19:42387050-42387550 2.59e-01 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chr5:59303276-59303776 1.71e-02 100 chr1:42335093-42335593 3.86e-01 1_[-6(2.60e-06)]_77 chr15:70062320-70062820 7.08e-04 23_[-2(1.17e-06)]_10_[+8(6.54e-06)]_\ 39 chr17:49192302-49192802 6.88e-15 27_[-4(1.57e-17)]_8_[+3(4.19e-08)]_\ 12 chr6:143450500-143451000 4.91e-01 100 chr19:33795778-33796278 3.61e-02 6_[-6(6.22e-07)]_39_[+6(1.03e-06)]_\ 11 chr19:41501343-41501843 2.73e-02 21_[-2(3.11e-07)]_63 chr6:28136661-28137161 5.27e-02 100 chr6:83867526-83868026 9.10e-01 100 chr19:35643405-35643905 9.97e-01 100 chr1:109483996-109484496 6.45e-01 76_[-6(3.66e-05)]_2 chr12:121404701-12140520 7.42e-03 19_[+2(7.74e-08)]_65 chr2:677024-677524 6.06e-01 12_[-6(8.95e-06)]_66 chr6:35259449-35259949 6.79e-01 100 chr11:1418155-1418655 1.33e-01 100 chr8:37302628-37303128 1.64e-01 100 chr6:30162664-30163164 1.04e-11 [-1(2.75e-05)]_4_[+1(3.01e-16)]_2 chr1:26695421-26695921 4.94e-02 31_[-6(5.02e-05)]_16_[+6(3.06e-07)]_\ 9 chr5:124734984-124735484 3.91e-01 100 chr1:236097032-236097532 9.50e-01 100 chr16:30570500-30571000 1.77e-37 21_[-1(5.05e-30)]_8_[-9(2.34e-13)]_\ 2 chr7:102572364-102572864 5.65e-01 100 chr12:66169688-66170188 9.05e-01 100 chr22:46053537-46054037 1.54e-02 56_[+2(9.73e-09)]_28 chr19:37467276-37467776 9.90e-01 100 chr21:33480022-33480522 5.13e-01 40_[-6(2.95e-05)]_38 chr15:72375755-72376255 7.00e-01 100 chr17:7234331-7234831 4.91e-01 27_[-6(2.95e-05)]_51 chr10:102766786-10276728 4.53e-03 20_[+2(2.01e-07)]_64 chr19:10976827-10977327 5.31e-23 [+9(1.92e-12)]_21_[-8(3.28e-06)]_45 chr5:134411708-134412208 3.38e-01 64_[+6(5.57e-05)]_14 chr11:114159929-11416042 6.73e-03 34_[+2(7.20e-07)]_1_[+2(1.02e-06)]_\ 33 chr19:41884131-41884631 1.12e-01 69_[+6(1.17e-07)]_9 chr17:43483570-43484070 8.01e-01 100 chr5:175378341-175378841 3.42e-01 100 chr19:37251769-37252269 6.08e-01 50_[-6(6.80e-05)]_28 chr5:34182285-34182785 2.45e-19 1_[+1(1.83e-19)]_17_[-7(7.64e-05)]_\ 4 chr1:80403347-80403847 2.17e-02 34_[-1(7.06e-06)]_19 chr19:33176887-33177387 1.95e-06 12_[+3(1.40e-10)]_66 chr1:93179883-93180383 9.33e-01 100 chr5:41747187-41747687 6.95e-05 46_[-2(5.68e-10)]_38 chr16:46495-46995 3.32e-19 20_[+1(4.41e-18)]_33 chr19:31332901-31333401 2.65e-23 4_[+1(3.42e-30)]_49 chr6:80132937-80133437 1.47e-02 30_[-2(7.74e-08)]_54 chr1:45875975-45876475 1.46e-04 [-2(1.62e-09)]_84 chr2:178484621-178485121 4.53e-06 31_[-2(1.89e-08)]_29_[-8(4.48e-06)]_\ 12 chr10:50463973-50464473 3.97e-02 13_[-8(3.88e-06)]_75 chr10:72580177-72580677 1.99e-12 52_[-1(4.60e-17)]_1 chr17:32015530-32016030 8.15e-04 6_[-1(1.39e-06)]_47 chr7:132255831-132256331 2.70e-01 7_[+2(8.60e-07)]_77 chr19:34134470-34134970 1.26e-01 35_[-6(7.86e-06)]_43 chr21:36122970-36123470 2.38e-24 17_[+1(3.48e-29)]_1_[-8(7.06e-06)]_\ 23 chr5:96934889-96935389 5.23e-01 100 chr1:244652994-244653494 6.67e-01 40_[+6(2.35e-05)]_38 chr19:44207401-44207901 5.09e-01 100 chr1:52955529-52956029 2.51e-02 10_[+1(2.95e-05)]_43 chr19:40567071-40567571 1.50e-25 27_[+1(8.17e-31)]_26 chr2:232473367-232473867 6.96e-11 7_[+2(2.52e-07)]_12_[-10(7.63e-15)]_\ 15 chr19:37655843-37656343 1.39e-01 54_[-6(1.65e-06)]_24 chr18:45755948-45756448 3.68e-04 40_[-2(3.05e-08)]_44 chr19:2462937-2463437 1.68e-01 100 chr1:153880957-153881457 9.15e-03 29_[+2(3.11e-07)]_55 chr17:61335935-61336435 7.28e-02 100 chr19:35881945-35882445 6.23e-22 6_[-8(5.93e-06)]_1_[+1(1.06e-27)]_\ 34 chr19:40348252-40348752 8.31e-01 100 chr1:110176228-110176728 2.03e-04 29_[+2(5.05e-08)]_13_[-2(2.40e-06)]_\ 26 chr19:40634424-40634924 8.63e-01 50_[-6(5.57e-05)]_28 chr6:26537292-26537792 7.36e-11 7_[-4(4.40e-12)]_9_[+3(2.72e-08)]_\ 31 chr15:65610890-65611390 9.36e-01 100 chr5:160008637-160009137 1.08e-24 14_[+1(8.17e-31)]_39 chr1:93078873-93079373 2.06e-01 26_[+6(1.30e-05)]_52 chr16:70778871-70779371 3.89e-10 6_[-5(7.01e-16)]_31_[+8(2.89e-05)]_\ 22 chr5:140295382-140295882 3.46e-03 42_[+2(2.87e-06)]_42 chr5:69521164-69521664 4.13e-02 22_[-1(4.32e-06)]_31 chr8:25998523-25999023 5.23e-03 1_[+8(4.54e-05)]_6_[+1(9.31e-06)]_\ 34 chr6:118660193-118660693 8.54e-04 31_[+2(1.63e-07)]_6_[-4(5.30e-06)]_\ 16 chr17:25919958-25920458 6.93e-13 42_[-7(8.19e-18)]_27 chr17:63842546-63843046 9.96e-01 100 chr1:78620097-78620597 2.08e-04 7_[-2(2.01e-07)]_9_[-1(5.14e-05)]_\ 21 chr5:177404101-177404601 2.20e-03 24_[-2(1.22e-08)]_60 chr5:109468672-109469172 1.80e-03 40_[-2(5.79e-08)]_44 chr15:89383559-89384059 5.32e-03 28_[+2(3.11e-07)]_24_[+2(2.22e-08)]_\ 16 chr1:232620479-232620979 2.23e-02 30_[+2(1.71e-06)]_54 chr1:234724154-234724654 2.47e-02 41_[+2(1.27e-06)]_43 chr19:37370952-37371452 2.76e-01 25_[-6(4.08e-05)]_53 chr10:75379134-75379634 8.36e-02 48_[-1(5.40e-05)]_5 chr19:48539554-48540054 4.65e-03 57_[-2(2.92e-09)]_27 chr17:26885529-26886029 4.11e-11 19_[+7(2.78e-18)]_50 chr1:143264418-143264918 4.40e-15 38_[-10(5.72e-25)]_12 chr19:39341770-39342270 7.23e-01 100 chr1:181127036-181127536 5.28e-03 43_[-2(4.12e-09)]_41 chr1_KI270709v1_random:7 5.13e-17 49_[+10(1.80e-27)]_1 chr1:80054136-80054636 1.45e-02 58_[+2(5.11e-07)]_26 chr19:39411882-39412382 5.85e-02 39_[+1(4.32e-06)]_14 chr11:65919104-65919604 2.81e-01 69_[+6(2.95e-05)]_9 chr2:165825017-165825517 4.38e-07 34_[+2(5.68e-10)]_50 chr17:26619794-26620294 3.04e-13 22_[-7(9.11e-20)]_47 chrX:73944010-73944510 5.97e-01 100 chr5:10601224-10601724 9.17e-02 30_[+2(2.85e-07)]_11_[+2(3.43e-06)]_\ 27 chr10:87586170-87586670 1.32e-03 44_[+2(8.48e-08)]_40 chr17:26603656-26604156 2.55e-11 53_[-7(2.17e-17)]_16 chr1:229221467-229221967 1.58e-02 30_[-2(8.60e-07)]_54 chr14:49861974-49862474 3.70e-01 100 chr1:125179935-125180435 2.91e-13 49_[+10(2.13e-20)]_1 chr16:1271739-1272239 6.29e-03 30_[+2(4.17e-08)]_22_[+2(4.17e-08)]_\ 16 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************