Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA | 47 | AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA |
CYTGGCACMBTGCCAR | 16 | CTTGGCACCGTGCCAA |
RAGGTCCCGGGTTCGARTCCCG | 22 | GAGGTCCCGGGTTCGAATCCCG |
AGTCCARMGYSYTAACCAYTASRCCAYGGRR | 31 | AGTCCAGCGCGCTAACCATTACGCCACGGGG |
TYGKTGGTYYAGKGGTAKRATTCTCGCYT | 29 | TTGTTGGTTTAGGGGTAGGATTCTCGCTT |
GGVSSMGGVSGCGGGGSCGSBG | 22 | GGAGGCGGCGGCGGGGGCGGGG |
ATCACAAAGAAGTTTCTGAGAATGCTTCTGT | 31 | ATCACAAAGAAGTTTCTGAGAATGCTTCTGT |
TTTTTWDTTWTT | 12 | TTTTTATTTTTT |
CCTGGGCGACAGAGTGAGACTC | 22 | CCTGGGCGACAGAGTGAGACTC |
ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA | 50 | ATGATTCCATTCGGTTCCATTTGATGATGATTCCATTCGATTCCATTCAA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.229 C 0.271 G 0.271 T 0.229
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 3172088 | 3172109 | 9.62e-13 | 1.11e-07 | gaggtcccgggttcaaatcccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 3188134 | 3188155 | 9.62e-13 | 1.11e-07 | gaggtcccgggttcaaatcccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 3189674 | 3189695 | 9.62e-13 | 1.11e-07 | gaggtcccgggttcaaatcccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr7 | + | 128783490 | 128783511 | 9.62e-13 | 1.11e-07 | gaggtcccgggttcaaatcccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 167714765 | 167714786 | 9.62e-13 | 1.11e-07 | gaggtcccgggttcaaatcccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 8226999 | 8227020 | 9.62e-12 | 9.21e-07 | AAGGTCGCGGGTTCGAACCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 33177099 | 33177120 | 1.23e-10 | 1.01e-05 | gagatcctgggttcgaatccca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr11 | - | 59550637 | 59550658 | 1.46e-10 | 1.05e-05 | AAGGTCCTGGGTTCGAGCCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | + | 8120981 | 8121002 | 1.79e-10 | 1.07e-05 | aaggttgtgggttcgaatccca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 28795972 | 28795993 | 1.86e-10 | 1.07e-05 | GAGGTCCTGGGTTCGATCCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 39154499 | 39154520 | 5.93e-10 | 3.1e-05 | GAGGTCCCCGGTTCAAATCCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 28790730 | 28790751 | 1.19e-09 | 5.27e-05 | AAGGTCCCTGGTTCGATCCCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr12 | - | 124927851 | 124927872 | 1.19e-09 | 5.27e-05 | AAGGTCCCTGGTTCGATCCCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 27280278 | 27280299 | 1.31e-09 | 5.39e-05 | AAGGTCCCCGGTTCGAAACCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 22297190 | 22297211 | 2.09e-09 | 7.51e-05 | gggggcgtgggttcgaatccca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 28943630 | 28943651 | 2.09e-09 | 7.51e-05 | GGGGGCGTGGGTTCGAATCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 71426534 | 71426555 | 3.1e-09 | 0.000105 | aaggtcctgagttcgagcctca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr13 | - | 44917935 | 44917956 | 4.44e-09 | 0.000142 | GGCGGCCCGGGTTCGACTCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 26575628 | 26575649 | 5.21e-09 | 0.000156 | taggtcgctggttcgaatccgg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 2945598 | 2945619 | 5.42e-09 | 0.000156 | gaggtcaggagttcaagtccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | + | 8125785 | 8125806 | 6.37e-09 | 0.000159 | ggaggcccgggttcgattcccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 27902916 | 27902937 | 6.37e-09 | 0.000159 | GGAGGCCCGGGTTCGATTCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | - | 70779047 | 70779068 | 6.37e-09 | 0.000159 | GGAGGCCCGGGTTCGATTCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 75034439 | 75034460 | 8.11e-09 | 0.000194 | GGGATTGTGGGTTCGAGTCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 21514958 | 21514979 | 8.85e-09 | 0.000196 | gaggtcaggagttcgagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 32531006 | 32531027 | 8.85e-09 | 0.000196 | GAGGTCAGGAGTTCGAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 28817243 | 28817264 | 1.44e-08 | 0.000305 | GAGGCCTCGGGTTCGATCCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr15 | + | 89335114 | 89335135 | 1.56e-08 | 0.00032 | aagattgcaggttcgagtcctg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 121016853 | 121016874 | 1.61e-08 | 0.00032 | GGAGACCCGGGTTCAATTCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 39412176 | 39412197 | 1.84e-08 | 0.000338 | GAGGTTGTGAGTTCGATCCTCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 27182335 | 27182356 | 1.94e-08 | 0.000338 | GAGGTCAGGAGTTCAAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 37918653 | 37918674 | 1.94e-08 | 0.000338 | gaggtcaggagttcaagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 50882769 | 50882790 | 1.94e-08 | 0.000338 | gaggtcaggagttcaagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 38753690 | 38753711 | 2.17e-08 | 0.000367 | GAGGTCAGGAGTTCGAAACTAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 26537539 | 26537560 | 2.5e-08 | 0.00041 | aagattccaggttcgactcctg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 14439227 | 14439248 | 3.43e-08 | 0.000547 | GAGGTCAGGAGTTCGAGACTAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 26311755 | 26311776 | 4.01e-08 | 0.000562 | AGCGATCCGAGTTCAAATCTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 27519569 | 27519590 | 4.01e-08 | 0.000562 | agcgatccgagttcaaatctcg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 28941609 | 28941630 | 4.01e-08 | 0.000562 | AGCGATCCGAGTTCAAATCTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | + | 49192568 | 49192589 | 4.01e-08 | 0.000562 | agcgatccgagttcaaatctcg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr15 | - | 65869070 | 65869091 | 4.01e-08 | 0.000562 | AGCGATCCGAGTTCAAATCTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 27213852 | 27213873 | 4.92e-08 | 0.000672 | AAGATTCTAGGTTCGACTCCTG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr4 | + | 139555472 | 139555493 | 5.14e-08 | 0.000687 | GACGGCGCACGTTCGAGTCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 27213601 | 27213622 | 6.87e-08 | 0.000898 | taggtcaggagttcgagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr22 | + | 19317085 | 19317106 | 8.08e-08 | 0.00101 | gaggtcaggagttcgagaccat |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 30907732 | 30907753 | 8.08e-08 | 0.00101 | GAGGTCAGGAGTTCGAGACCAT |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 49817707 | 49817728 | 1e-07 | 0.00122 | gaggtcaggagttcgagaacag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 1383605 | 1383626 | 1.49e-07 | 0.00179 | aaggttggtggttcgagcccac |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 161540283 | 161540304 | 1.8e-07 | 0.00211 | aaggttggtggttcgatcccac |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 8222246 | 8222267 | 1.95e-07 | 0.00224 | GGAGACCGGGGTTCGATTCCCC |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr12 | + | 98503543 | 98503564 | 3.26e-07 | 0.00367 | ggagaccggggttcaattcccc |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 35385885 | 35385906 | 5.75e-07 | 0.00636 | GAGGTCAGGAGTTCAAGGCCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 82494593 | 82494614 | 6.26e-07 | 0.00679 | AGCAATCTGAGTTCAAATCTTG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 225654714 | 225654735 | 7.77e-07 | 0.00826 | gaggtcaggagttccagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 90454297 | 90454318 | 8.68e-07 | 0.00907 | GAAGTCAGGAGTTCAAGAACAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | + | 46508 | 46529 | 9.08e-07 | 0.00932 | gaggtcaggagttggagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr8 | + | 21954417 | 21954438 | 9.94e-07 | 0.00984 | gaggtcaggagttcgtgaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 34218217 | 34218238 | 9.94e-07 | 0.00984 | GAGGTCAGGAGCTCGAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 139490327 | 139490348 | 1.1e-06 | 0.0107 | GAGGTCGGGAGCTCAAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 48539929 | 48539950 | 1.57e-06 | 0.015 | gaggtcaggagttcaggaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 34982177 | 34982198 | 1.98e-06 | 0.0187 | GACTGCCTGAGTTCAAATCCTA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | + | 8186398 | 8186419 | 2.67e-06 | 0.0248 | aaggttgcgtgttcaaatcacg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chrX | - | 24144409 | 24144430 | 2.94e-06 | 0.0268 | GAGCTCAGGAGTTCAAGACTAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chrX | + | 72210149 | 72210170 | 3.18e-06 | 0.0285 | gaggtcaggagtttaagactag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 244653412 | 244653433 | 3.4e-06 | 0.0301 | TGGGGCCGGGGTCCGAGCCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr12 | - | 120647434 | 120647455 | 3.98e-06 | 0.0347 | GAGCCCAGGAGTTCGAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 32367625 | 32367646 | 6.03e-06 | 0.0517 | GAGCCCAGGAGTTCAAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 35617555 | 35617576 | 6.59e-06 | 0.0557 | GAGCCTGGGAGTTCAAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 15735692 | 15735713 | 6.8e-06 | 0.0567 | gatggcctgggttcaaattcca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 161621717 | 161621738 | 7.12e-06 | 0.0581 | aaggttggtggttcgttcccac |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 33373448 | 33373469 | 7.17e-06 | 0.0581 | GACGACTCAAGTTCGAGTCGGA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 36379602 | 36379623 | 8.66e-06 | 0.0691 | AAGCCCAGGAGTTCGACACCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 37371084 | 37371105 | 1.56e-05 | 0.123 | GGTGTCGCTGGTTCAGATCTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 144216598 | 144216619 | 1.87e-05 | 0.145 | gtccgcgtgggttcgaacccca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 17208041 | 17208062 | 1.94e-05 | 0.149 | GAGGCCCCAAGTTCATCACTTG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 230145796 | 230145817 | 2.1e-05 | 0.159 | AGGGACCTTGTTTCAAACATGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 10976838 | 10976859 | 2.14e-05 | 0.159 | gagctcaggagtttgagaccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 28597348 | 28597369 | 2.24e-05 | 0.161 | GCACGCGTGGGTTCGAATCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 37467347 | 37467368 | 2.25e-05 | 0.161 | GAGGCCGCTCGTGCAAAACCTA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 50882377 | 50882398 | 2.25e-05 | 0.161 | gaggtcaggagtttgagatcag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 96935307 | 96935328 | 2.3e-05 | 0.163 | GGCGCCCTGGGGTCCAGTCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 28213087 | 28213108 | 2.36e-05 | 0.165 | gcacacgtgggttcgaatccca |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 82494729 | 82494750 | 2.92e-05 | 0.202 | GAGGTCGATGGATCGAAACCAT |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr2 | - | 55419719 | 55419740 | 3.05e-05 | 0.209 | AGGGACACACATTCAAGCCCCC |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | + | 121016679 | 121016700 | 3.15e-05 | 0.213 | TGGGTCCCGGGTTAGTCTCCTG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 26571872 | 26571893 | 3.55e-05 | 0.237 | GAGGTAGCGGGATCGATGCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr2 | + | 235051333 | 235051354 | 3.69e-05 | 0.244 | AGAAGTGTGAGTTTGACCCCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 227735025 | 227735046 | 4.09e-05 | 0.267 | GGAGGCCCGACTTCGACCACCT |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 35259532 | 35259553 | 4.23e-05 | 0.273 | GAAGAGCTCGGTTCAGATCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr22 | - | 29267815 | 29267836 | 4.41e-05 | 0.28 | AGGGTTCTCGGGTCGCGCCCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 107459276 | 107459297 | 4.43e-05 | 0.28 | AAAGTTCATGGTTTGAGTCTGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | - | 16217335 | 16217356 | 4.63e-05 | 0.288 | AGGGTCCGGCTTTCGGCTCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 28817237 | 28817258 | 4.66e-05 | 0.288 | aggtgtcggggatcgaacccga |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | + | 139518286 | 139518307 | 4.99e-05 | 0.305 | AGGAGCCCGAGTCAGAAACCTG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr12 | + | 56630241 | 56630262 | 5.27e-05 | 0.319 | GGGGTCCGGGGTTCGGGAAGGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | - | 68843732 | 68843753 | 5.59e-05 | 0.335 | GAGAGTCCCGGGTCCAGCCCGG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 230145442 | 230145463 | 5.9e-05 | 0.349 | GGGGGACTGGCTTCAAACACCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr1 | - | 43836917 | 43836938 | 6.01e-05 | 0.349 | GAAGACTTGTGTTCTAATCCTG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 28795966 | 28795987 | 6.06e-05 | 0.349 | aggtactggggatcgaacccag |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr21 | + | 33480196 | 33480217 | 6.08e-05 | 0.349 | CGGAGCCGGAGTTCAGACCCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr22 | + | 20117494 | 20117515 | 6.32e-05 | 0.357 | aggggtcgaggttcgggtcgtg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | + | 65035687 | 65035708 | 6.34e-05 | 0.357 | GGCGTCTGAGGTTGCAATCTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr5 | - | 126819699 | 126819720 | 6.6e-05 | 0.368 | GCAGTCAGGAGTTTGAGACCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 39403681 | 39403702 | 6.66e-05 | 0.368 | GGGATTCCAGTTTCTACTCCCT |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr11 | - | 34223024 | 34223045 | 7e-05 | 0.383 | AGGGGCTTTGGGTCAAAGCCCA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | - | 29816319 | 29816340 | 7.13e-05 | 0.386 | GGAGATCGAGGTTCGGTACTCC |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | - | 30527218 | 30527239 | 7.27e-05 | 0.391 | GGGGTCCCAGGCTCAAGGACCT |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 37507153 | 37507174 | 7.67e-05 | 0.408 | GAGATTCGGCGTCTGAGCCTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | - | 144216604 | 144216625 | 7.8e-05 | 0.411 | CAGGAGTGGGGTTCGAACCCAC |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | + | 75261600 | 75261621 | 7.96e-05 | 0.413 | GGCCCCGCGGCTTCAAAACTCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | + | 39412775 | 39412796 | 7.98e-05 | 0.413 | GAGACCCCGAGGTCCAGACCCC |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 41262558 | 41262579 | 8.19e-05 | 0.42 | GGGCCCAGAGGTTCCAGTCCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr16 | - | 3172171 | 3172192 | 8.58e-05 | 0.436 | GAGGCTTCAGGCTCGGTCCCCG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr2 | - | 165825318 | 165825339 | 8.73e-05 | 0.44 | AGCAGCATGGGCTCCATTCCAG |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr15 | + | 72117922 | 72117943 | 9.22e-05 | 0.461 | GAGAGCACGCGTTGGAccgccg |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr17 | + | 7484317 | 7484338 | 9.33e-05 | 0.462 | GGGGACGCGAGGGCGAATCTAT |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr6 | + | 27519459 | 27519480 | 9.66e-05 | 0.474 | GACAGCTTGAGTTCGGAAATGA |
RAGGTCCCGGGTTCGARTCCCG | MEME-3 | chr19 | - | 17334835 | 17334856 | 9.93e-05 | 0.484 | GAGAATCGAGGTTCGGCTCGGG |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif RAGGTCCCGGGTTCGARTCCCG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.