Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA 47 AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
CYTGGCACMBTGCCAR 16 CTTGGCACCGTGCCAA
RAGGTCCCGGGTTCGARTCCCG 22 GAGGTCCCGGGTTCGAATCCCG
AGTCCARMGYSYTAACCAYTASRCCAYGGRR 31 AGTCCAGCGCGCTAACCATTACGCCACGGGG
TYGKTGGTYYAGKGGTAKRATTCTCGCYT 29 TTGTTGGTTTAGGGGTAGGATTCTCGCTT
GGVSSMGGVSGCGGGGSCGSBG 22 GGAGGCGGCGGCGGGGGCGGGG
ATCACAAAGAAGTTTCTGAGAATGCTTCTGT 31 ATCACAAAGAAGTTTCTGAGAATGCTTCTGT
TTTTTWDTTWTT 12 TTTTTATTTTTT
CCTGGGCGACAGAGTGAGACTC 22 CCTGGGCGACAGAGTGAGACTC
ATSATTCCMTHSDDYTCMRTTTKRTGATGAWTCCAKKSNAWYMCATTMDA 50 ATGATTCCATTCGGTTCCATTTGATGATGATTCCATTCGATTCCATTCAA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.229 C 0.271 G 0.271 T 0.229


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 3172088 3172109 9.62e-13 1.11e-07 gaggtcccgggttcaaatcccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 3188134 3188155 9.62e-13 1.11e-07 gaggtcccgggttcaaatcccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 3189674 3189695 9.62e-13 1.11e-07 gaggtcccgggttcaaatcccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr7 + 128783490 128783511 9.62e-13 1.11e-07 gaggtcccgggttcaaatcccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 167714765 167714786 9.62e-13 1.11e-07 gaggtcccgggttcaaatcccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 8226999 8227020 9.62e-12 9.21e-07 AAGGTCGCGGGTTCGAACCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 33177099 33177120 1.23e-10 1.01e-05 gagatcctgggttcgaatccca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr11 - 59550637 59550658 1.46e-10 1.05e-05 AAGGTCCTGGGTTCGAGCCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 + 8120981 8121002 1.79e-10 1.07e-05 aaggttgtgggttcgaatccca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 28795972 28795993 1.86e-10 1.07e-05 GAGGTCCTGGGTTCGATCCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 39154499 39154520 5.93e-10 3.1e-05 GAGGTCCCCGGTTCAAATCCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 28790730 28790751 1.19e-09 5.27e-05 AAGGTCCCTGGTTCGATCCCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr12 - 124927851 124927872 1.19e-09 5.27e-05 AAGGTCCCTGGTTCGATCCCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 27280278 27280299 1.31e-09 5.39e-05 AAGGTCCCCGGTTCGAAACCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 22297190 22297211 2.09e-09 7.51e-05 gggggcgtgggttcgaatccca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 28943630 28943651 2.09e-09 7.51e-05 GGGGGCGTGGGTTCGAATCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 71426534 71426555 3.1e-09 0.000105 aaggtcctgagttcgagcctca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr13 - 44917935 44917956 4.44e-09 0.000142 GGCGGCCCGGGTTCGACTCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 26575628 26575649 5.21e-09 0.000156 taggtcgctggttcgaatccgg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 2945598 2945619 5.42e-09 0.000156 gaggtcaggagttcaagtccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 + 8125785 8125806 6.37e-09 0.000159 ggaggcccgggttcgattcccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 27902916 27902937 6.37e-09 0.000159 GGAGGCCCGGGTTCGATTCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 - 70779047 70779068 6.37e-09 0.000159 GGAGGCCCGGGTTCGATTCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 75034439 75034460 8.11e-09 0.000194 GGGATTGTGGGTTCGAGTCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 21514958 21514979 8.85e-09 0.000196 gaggtcaggagttcgagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 32531006 32531027 8.85e-09 0.000196 GAGGTCAGGAGTTCGAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 28817243 28817264 1.44e-08 0.000305 GAGGCCTCGGGTTCGATCCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr15 + 89335114 89335135 1.56e-08 0.00032 aagattgcaggttcgagtcctg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 121016853 121016874 1.61e-08 0.00032 GGAGACCCGGGTTCAATTCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 39412176 39412197 1.84e-08 0.000338 GAGGTTGTGAGTTCGATCCTCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 27182335 27182356 1.94e-08 0.000338 GAGGTCAGGAGTTCAAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 37918653 37918674 1.94e-08 0.000338 gaggtcaggagttcaagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 50882769 50882790 1.94e-08 0.000338 gaggtcaggagttcaagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 38753690 38753711 2.17e-08 0.000367 GAGGTCAGGAGTTCGAAACTAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 26537539 26537560 2.5e-08 0.00041 aagattccaggttcgactcctg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 14439227 14439248 3.43e-08 0.000547 GAGGTCAGGAGTTCGAGACTAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 26311755 26311776 4.01e-08 0.000562 AGCGATCCGAGTTCAAATCTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 27519569 27519590 4.01e-08 0.000562 agcgatccgagttcaaatctcg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 28941609 28941630 4.01e-08 0.000562 AGCGATCCGAGTTCAAATCTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 + 49192568 49192589 4.01e-08 0.000562 agcgatccgagttcaaatctcg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr15 - 65869070 65869091 4.01e-08 0.000562 AGCGATCCGAGTTCAAATCTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 27213852 27213873 4.92e-08 0.000672 AAGATTCTAGGTTCGACTCCTG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr4 + 139555472 139555493 5.14e-08 0.000687 GACGGCGCACGTTCGAGTCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 27213601 27213622 6.87e-08 0.000898 taggtcaggagttcgagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr22 + 19317085 19317106 8.08e-08 0.00101 gaggtcaggagttcgagaccat
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 30907732 30907753 8.08e-08 0.00101 GAGGTCAGGAGTTCGAGACCAT
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 49817707 49817728 1e-07 0.00122 gaggtcaggagttcgagaacag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 1383605 1383626 1.49e-07 0.00179 aaggttggtggttcgagcccac
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 161540283 161540304 1.8e-07 0.00211 aaggttggtggttcgatcccac
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 8222246 8222267 1.95e-07 0.00224 GGAGACCGGGGTTCGATTCCCC
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr12 + 98503543 98503564 3.26e-07 0.00367 ggagaccggggttcaattcccc
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 35385885 35385906 5.75e-07 0.00636 GAGGTCAGGAGTTCAAGGCCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 82494593 82494614 6.26e-07 0.00679 AGCAATCTGAGTTCAAATCTTG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 225654714 225654735 7.77e-07 0.00826 gaggtcaggagttccagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 90454297 90454318 8.68e-07 0.00907 GAAGTCAGGAGTTCAAGAACAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 + 46508 46529 9.08e-07 0.00932 gaggtcaggagttggagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr8 + 21954417 21954438 9.94e-07 0.00984 gaggtcaggagttcgtgaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 34218217 34218238 9.94e-07 0.00984 GAGGTCAGGAGCTCGAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 139490327 139490348 1.1e-06 0.0107 GAGGTCGGGAGCTCAAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 48539929 48539950 1.57e-06 0.015 gaggtcaggagttcaggaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 34982177 34982198 1.98e-06 0.0187 GACTGCCTGAGTTCAAATCCTA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 + 8186398 8186419 2.67e-06 0.0248 aaggttgcgtgttcaaatcacg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chrX - 24144409 24144430 2.94e-06 0.0268 GAGCTCAGGAGTTCAAGACTAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chrX + 72210149 72210170 3.18e-06 0.0285 gaggtcaggagtttaagactag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 244653412 244653433 3.4e-06 0.0301 TGGGGCCGGGGTCCGAGCCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr12 - 120647434 120647455 3.98e-06 0.0347 GAGCCCAGGAGTTCGAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 32367625 32367646 6.03e-06 0.0517 GAGCCCAGGAGTTCAAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 35617555 35617576 6.59e-06 0.0557 GAGCCTGGGAGTTCAAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 15735692 15735713 6.8e-06 0.0567 gatggcctgggttcaaattcca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 161621717 161621738 7.12e-06 0.0581 aaggttggtggttcgttcccac
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 33373448 33373469 7.17e-06 0.0581 GACGACTCAAGTTCGAGTCGGA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 36379602 36379623 8.66e-06 0.0691 AAGCCCAGGAGTTCGACACCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 37371084 37371105 1.56e-05 0.123 GGTGTCGCTGGTTCAGATCTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 144216598 144216619 1.87e-05 0.145 gtccgcgtgggttcgaacccca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 17208041 17208062 1.94e-05 0.149 GAGGCCCCAAGTTCATCACTTG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 230145796 230145817 2.1e-05 0.159 AGGGACCTTGTTTCAAACATGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 10976838 10976859 2.14e-05 0.159 gagctcaggagtttgagaccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 28597348 28597369 2.24e-05 0.161 GCACGCGTGGGTTCGAATCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 37467347 37467368 2.25e-05 0.161 GAGGCCGCTCGTGCAAAACCTA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 50882377 50882398 2.25e-05 0.161 gaggtcaggagtttgagatcag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 96935307 96935328 2.3e-05 0.163 GGCGCCCTGGGGTCCAGTCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 28213087 28213108 2.36e-05 0.165 gcacacgtgggttcgaatccca
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 82494729 82494750 2.92e-05 0.202 GAGGTCGATGGATCGAAACCAT
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr2 - 55419719 55419740 3.05e-05 0.209 AGGGACACACATTCAAGCCCCC
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 + 121016679 121016700 3.15e-05 0.213 TGGGTCCCGGGTTAGTCTCCTG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 26571872 26571893 3.55e-05 0.237 GAGGTAGCGGGATCGATGCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr2 + 235051333 235051354 3.69e-05 0.244 AGAAGTGTGAGTTTGACCCCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 227735025 227735046 4.09e-05 0.267 GGAGGCCCGACTTCGACCACCT
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 35259532 35259553 4.23e-05 0.273 GAAGAGCTCGGTTCAGATCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr22 - 29267815 29267836 4.41e-05 0.28 AGGGTTCTCGGGTCGCGCCCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 107459276 107459297 4.43e-05 0.28 AAAGTTCATGGTTTGAGTCTGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 - 16217335 16217356 4.63e-05 0.288 AGGGTCCGGCTTTCGGCTCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 28817237 28817258 4.66e-05 0.288 aggtgtcggggatcgaacccga
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 + 139518286 139518307 4.99e-05 0.305 AGGAGCCCGAGTCAGAAACCTG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr12 + 56630241 56630262 5.27e-05 0.319 GGGGTCCGGGGTTCGGGAAGGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 - 68843732 68843753 5.59e-05 0.335 GAGAGTCCCGGGTCCAGCCCGG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 230145442 230145463 5.9e-05 0.349 GGGGGACTGGCTTCAAACACCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr1 - 43836917 43836938 6.01e-05 0.349 GAAGACTTGTGTTCTAATCCTG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 28795966 28795987 6.06e-05 0.349 aggtactggggatcgaacccag
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr21 + 33480196 33480217 6.08e-05 0.349 CGGAGCCGGAGTTCAGACCCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr22 + 20117494 20117515 6.32e-05 0.357 aggggtcgaggttcgggtcgtg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 + 65035687 65035708 6.34e-05 0.357 GGCGTCTGAGGTTGCAATCTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr5 - 126819699 126819720 6.6e-05 0.368 GCAGTCAGGAGTTTGAGACCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 39403681 39403702 6.66e-05 0.368 GGGATTCCAGTTTCTACTCCCT
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr11 - 34223024 34223045 7e-05 0.383 AGGGGCTTTGGGTCAAAGCCCA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 - 29816319 29816340 7.13e-05 0.386 GGAGATCGAGGTTCGGTACTCC
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 - 30527218 30527239 7.27e-05 0.391 GGGGTCCCAGGCTCAAGGACCT
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 37507153 37507174 7.67e-05 0.408 GAGATTCGGCGTCTGAGCCTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 - 144216604 144216625 7.8e-05 0.411 CAGGAGTGGGGTTCGAACCCAC
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 + 75261600 75261621 7.96e-05 0.413 GGCCCCGCGGCTTCAAAACTCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 + 39412775 39412796 7.98e-05 0.413 GAGACCCCGAGGTCCAGACCCC
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 41262558 41262579 8.19e-05 0.42 GGGCCCAGAGGTTCCAGTCCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr16 - 3172171 3172192 8.58e-05 0.436 GAGGCTTCAGGCTCGGTCCCCG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr2 - 165825318 165825339 8.73e-05 0.44 AGCAGCATGGGCTCCATTCCAG
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr15 + 72117922 72117943 9.22e-05 0.461 GAGAGCACGCGTTGGAccgccg
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr17 + 7484317 7484338 9.33e-05 0.462 GGGGACGCGAGGGCGAATCTAT
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr6 + 27519459 27519480 9.66e-05 0.474 GACAGCTTGAGTTCGGAAATGA
RAGGTCCCGGGTTCGARTCCCG MEME-3 chr19 - 17334835 17334856 9.93e-05 0.484 GAGAATCGAGGTTCGGCTCGGG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif RAGGTCCCGGGTTCGARTCCCG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_3 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF221.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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