# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF214.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF214.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF214.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF214.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:12:58 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF214.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:12:59 PST 2017)
#        host: indra
#        when: Mon Dec 18 16:26:17 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.347 C 0.157 G 0.163 T 0.333


MOTIF TAAATAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATAAA   TTTATTTA        375         74   1.1e-076   3.0e-072
#         TAAATAAA   TTTATTTA        375         74   1.1e-076   3.0e-072

letter-probability matrix: alength= 4 w= 8 nsites= 1797 E= 3.0e-072
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTCTCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTCTCR     YGAGAC        212         20   3.0e-050   8.0e-046
#           GTCTCA     TGAGAC        186         17   1.2e-043   3.3e-039
#           GTCTCG     CGAGAC         50          3   1.1e-012   2.9e-008

letter-probability matrix: alength= 4 w= 6 nsites= 269 E= 8.0e-046
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.814126 0.000000 0.185874 0.000000


MOTIF ACAGWG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ACAGWG     CWCTGT        181         30   8.4e-033   2.2e-028
#           ACAGAG     CTCTGT        154         21   3.2e-030   8.3e-026
#           ACAGTG     CACTGT         29          9   7.0e-004   1.8e+001

letter-probability matrix: alength= 4 w= 6 nsites= 196 E= 2.2e-028
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.846939 0.000000 0.000000 0.153061
0.000000 0.000000 1.000000 0.000000


MOTIF CTCAAVA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CTCAAVA    TBTTGAG        139         35   1.9e-018   4.8e-014
#          CTCAAAA    TTTTGAG         81         22   4.2e-010   1.1e-005
#          CTCAAGA    TCTTGAG         33          7   1.6e-005   4.1e-001
#          CTCAACA    TGTTGAG         28          7   2.1e-004   5.4e+000

letter-probability matrix: alength= 4 w= 7 nsites= 145 E= 4.8e-014
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.565517 0.206897 0.227586 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTGGGY DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCTGGGY    RCCCAGG         64          6   2.8e-014   7.2e-010
#          CCTGGGT    ACCCAGG         32          2   2.4e-008   6.1e-004
#          CCTGGGC    GCCCAGG         32          4   7.0e-007   1.8e-002

letter-probability matrix: alength= 4 w= 7 nsites= 64 E= 7.2e-010
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.500000 0.000000 0.500000


MOTIF ARACTCC DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ARACTCC    GGAGTYT         55          7   4.5e-011   1.1e-006
#          AAACTCC    GGAGTTT         30          2   8.9e-008   2.3e-003
#          AGACTCC    GGAGTCT         25          5   1.4e-004   3.5e+000

letter-probability matrix: alength= 4 w= 7 nsites= 55 E= 1.1e-006
1.000000 0.000000 0.000000 0.000000
0.545455 0.000000 0.454545 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTC DREME-7

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST         CTC        GAG        502        419   8.7e-009   2.2e-004
#              CTC        GAG        502        419   8.7e-009   2.2e-004

letter-probability matrix: alength= 4 w= 3 nsites= 1225 E= 2.2e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 37.34 seconds