# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF213.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF213.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF213.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF213.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:06:09 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF213.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:06:09 PDT 2018) # host: surya # when: Thu May 10 17:49:21 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.284 C 0.221 G 0.229 T 0.267 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 198 37 6.4e-034 2.0e-029 # TAAATAAA TTTATTTA 198 37 6.4e-034 2.0e-029 letter-probability matrix: alength= 4 w= 8 nsites= 991 E= 2.0e-029 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTCTCAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RTCTCAAA TTTGAGAY 112 3 2.7e-032 8.3e-028 # GTCTCAAA TTTGAGAC 75 2 1.9e-021 5.9e-017 # ATCTCAAA TTTGAGAT 37 1 8.2e-011 2.6e-006 letter-probability matrix: alength= 4 w= 8 nsites= 112 E= 8.3e-028 0.330357 0.000000 0.669643 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCYGYC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTCYGYC GRCRGAG 113 27 1.6e-015 5.0e-011 # CTCTGTC GACAGAG 42 7 1.1e-007 3.3e-003 # CTCTGCC GGCAGAG 28 7 2.1e-004 6.5e+000 # CTCCGCC GGCGGAG 39 15 5.8e-004 1.8e+001 # CTCCGTC GACGGAG 8 0 3.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 121 E= 5.0e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.396694 0.000000 0.603306 0.000000 0.000000 1.000000 0.000000 0.000000 0.570248 0.000000 0.429752 0.000000 1.000000 0.000000 0.000000 MOTIF AGACTCY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGACTCY RGAGTCT 65 8 3.9e-013 1.2e-008 # AGACTCC GGAGTCT 45 5 1.1e-009 3.3e-005 # AGACTCT AGAGTCT 20 3 2.2e-004 6.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 65 E= 1.2e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.692308 0.000000 0.307692 MOTIF CGCCGCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CGCCGCC GGCGGCG 60 11 4.6e-010 1.4e-005 # CGCCGCC GGCGGCG 60 11 4.6e-010 1.4e-005 letter-probability matrix: alength= 4 w= 7 nsites= 66 E= 1.4e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGK DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTGK MCAG 471 393 3.4e-007 1.0e-002 # CTGT ACAG 308 229 2.9e-006 8.8e-002 # CTGG CCAG 339 288 1.9e-003 5.9e+001 letter-probability matrix: alength= 4 w= 4 nsites= 1020 E= 1.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.562745 0.437255 # Stopping reason: E-value threshold exceeded # Running time: 25.90 seconds