Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
TGTWWRTRTGGTATAT | 16 | TGTTAATATGGTATAT |
TRTGGTATATRT | 12 | TGTGGTATATAT |
TGGAGAAGTGACWAGACAAA | 20 | TGGAGAAGTGACAAGACAAA |
CACACACACACA | 12 | CACACACACACA |
AWCAAAAGAAAGMTRGARTRGC | 22 | ATCAAAAGAAAGCTGGAGTGGC |
GGKGTKTGKGBTKBKDKGKGTG | 22 | GGTGTGTGTGCTGGTAGGGGTG |
TCAGACARAGYAGAYTTCAGAGCAARGAAAR | 31 | TCAGACAAAGCAGACTTCAGAGCAAGGAAAA |
AAGRRTRATAAA | 12 | AAGGGTGATAAA |
CCATCAATCAATGAGTGGATAA | 22 | CCATCAATCAATGAGTGGATAA |
ARCYCYYRRGYCTAACTRCTTCTTTGGRKTT | 31 | AGCCCCTAGGTCTAACTGCTTCTTTGGGTTT |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.305 C 0.195 G 0.195 T 0.305
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CCATCAATCAATGAGTGGATAA | MEME-9 | chr13 | + | 34609990 | 34610011 | 1.26e-13 | 1.7e-08 | ccatcaatcaatgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr7 | - | 112948358 | 112948379 | 1.26e-13 | 1.7e-08 | CCATCAATCAATGAGTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr4 | + | 122787093 | 122787114 | 1.26e-13 | 1.7e-08 | ccatcaatcaatgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr10 | - | 12581272 | 12581293 | 2.07e-13 | 1.7e-08 | CCATCAATCAACGAGTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr17 | + | 13451717 | 13451738 | 2.07e-13 | 1.7e-08 | ccatcaatcaacgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr2 | + | 147940536 | 147940557 | 2.07e-13 | 1.7e-08 | ccatcaatcaacgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr5 | + | 170851747 | 170851768 | 2.07e-13 | 1.7e-08 | ccatcaatcaacgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr9 | + | 16300221 | 16300242 | 7.23e-13 | 5.19e-08 | ccatcaatcaaagagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr17 | - | 65118855 | 65118876 | 1.43e-12 | 9.13e-08 | CCATCAATCATCGAGTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr2 | + | 37210377 | 37210398 | 3.47e-12 | 1.99e-07 | ccatcaactaatgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 42495198 | 42495219 | 1.72e-11 | 8.23e-07 | CCATCAACCAATGAGTGAATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr5 | - | 96842173 | 96842194 | 1.72e-11 | 8.23e-07 | CCATCAACCAATGAGTAGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 168934233 | 168934254 | 2.01e-11 | 8.9e-07 | ACATCAATCAATGAGTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr9 | - | 85871960 | 85871981 | 4.85e-11 | 1.86e-06 | CCATCAATGATAGACTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 109552107 | 109552128 | 4.85e-11 | 1.86e-06 | CCATCAATGATAGACTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr9 | - | 113608277 | 113608298 | 7.7e-11 | 2.76e-06 | CCATCAACTGATGAATGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 224577822 | 224577843 | 1.28e-10 | 4.26e-06 | ccatcaaccaacaaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 65207931 | 65207952 | 1.33e-10 | 4.26e-06 | CCATCAATGATGGACTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 38408948 | 38408969 | 1.8e-10 | 5.45e-06 | ctaccaatcaatgagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 1303918 | 1303939 | 2.94e-10 | 8.44e-06 | CCATCAATGTATGATTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr12 | + | 25315548 | 25315569 | 6.86e-10 | 1.88e-05 | tcatcaattaacaagtggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 229937507 | 229937528 | 8.53e-10 | 2.23e-05 | ccatcaacagttgaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr16 | + | 81422772 | 81422793 | 1.02e-09 | 2.49e-05 | ccatcaatcaacaagtagacaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr2 | - | 226711829 | 226711850 | 1.04e-09 | 2.49e-05 | CCATCAACTGATGAATGAATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr5 | + | 124433330 | 124433351 | 2.32e-09 | 5.34e-05 | tcatcaatggataaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr4 | + | 140330059 | 140330080 | 2.56e-09 | 5.65e-05 | ccatcagtcaatgagtggctaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr3 | + | 43230690 | 43230711 | 4.56e-09 | 9.7e-05 | acatcaaccaatgagcagataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 198762371 | 198762392 | 9.72e-09 | 0.000193 | ccatcagttatagactgggcaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | + | 40053660 | 40053681 | 9.76e-09 | 0.000193 | ctgtctatcaatgaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr12 | + | 45212223 | 45212244 | 1.1e-08 | 0.000208 | tcatcaatgatggactagataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr5 | + | 175340261 | 175340282 | 1.12e-08 | 0.000208 | ctatcaatggtagactggttaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 36298227 | 36298248 | 1.87e-08 | 0.000337 | CCATCAACAGGGGACTGGGTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 235462984 | 235463005 | 3.24e-08 | 0.000564 | ccatcaatcaatgagtaaagaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 208506936 | 208506957 | 4.26e-08 | 0.00072 | ccaacaacagatgaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr10 | + | 118939575 | 118939596 | 4.4e-08 | 0.000722 | ctgtcaactgatgaatagataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 184895946 | 184895967 | 4.62e-08 | 0.000737 | GCACCAGCGGTTGATTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr14 | + | 68222281 | 68222302 | 7.44e-08 | 0.00116 | ccatcagtcaatgagtatacaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | + | 40088755 | 40088776 | 1.21e-07 | 0.00183 | ctaacaatgaataaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | + | 1303975 | 1303996 | 2.38e-07 | 0.00351 | ccacgaatgtatgattggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | + | 111235986 | 111236007 | 3.04e-07 | 0.00436 | ccatcaagcaacaagttgataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr10 | - | 101409796 | 101409817 | 3.24e-07 | 0.00455 | TTATCAACGAATAAACAGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr10 | + | 48221195 | 48221216 | 3.35e-07 | 0.00458 | ccatcaatcaatgagtggtata |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr5 | - | 67358534 | 67358555 | 4.66e-07 | 0.00623 | CCACTGACCAATGAGTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | + | 27908134 | 27908155 | 5.09e-07 | 0.00666 | ccaccaacagtgaattagataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr2 | - | 189955351 | 189955372 | 9.32e-07 | 0.0119 | CCATCAATGGATAACTGGATTT |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 4838535 | 4838556 | 1.81e-06 | 0.0226 | TTATCAGTCAACAAGTATATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr18 | - | 35016185 | 35016206 | 2.78e-06 | 0.034 | CTATCCACAGTGGATTGGGTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr18 | - | 3144884 | 3144905 | 8.62e-06 | 0.103 | CTATCAATTATTGAGAGAGTAG |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | + | 21104819 | 21104840 | 9.56e-06 | 0.112 | ccttcaatggtagactaaagaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | + | 40053664 | 40053685 | 1.28e-05 | 0.147 | ctatcaatgaatggataaagaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | + | 40053539 | 40053560 | 1.47e-05 | 0.165 | ccagcaatctactactggatat |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr12 | - | 7015779 | 7015800 | 1.53e-05 | 0.169 | CCACCAATCATCAAAGTAATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr20 | - | 32174117 | 32174138 | 1.64e-05 | 0.178 | TTCTCAATCATTGATAGAATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr4 | + | 111243080 | 111243101 | 1.74e-05 | 0.185 | taatcagtgagtgaatgggtga |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr9 | - | 136579792 | 136579813 | 1.77e-05 | 0.185 | GAGTGAATGAATGAGTGAGTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr4 | - | 27034322 | 27034343 | 2.03e-05 | 0.208 | CCAGCTCACAATGAGTGAATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | + | 434561 | 434582 | 2.55e-05 | 0.258 | TCATGAGTGAGTGAGTGAGTGA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 13674883 | 13674904 | 2.7e-05 | 0.268 | CCATCATTATGAGACTGAATCA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr13 | + | 43948519 | 43948540 | 2.82e-05 | 0.275 | tgttcaatggggaaatggataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 169447677 | 169447698 | 2.95e-05 | 0.282 | GCATCTAACAACAAAGGGTTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 83822856 | 83822877 | 3.02e-05 | 0.285 | CCACCAACTGACGGATGATAAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr16 | - | 24379178 | 24379199 | 3.24e-05 | 0.3 | AGAGCAATAAATGTGTGGATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 42495194 | 42495215 | 3.36e-05 | 0.306 | CAACCAATGAGTGAATAAAGAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 228823585 | 228823606 | 3.65e-05 | 0.328 | CTTTCAACAATTAATAGGACAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 119308583 | 119308604 | 4.17e-05 | 0.369 | CCATCTGTCAAGCAGTATGCAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | + | 1303765 | 1303786 | 4.3e-05 | 0.374 | gtatctacctaaaagaaaataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr17 | - | 28810596 | 28810617 | 4.54e-05 | 0.389 | CCCCCAGATGTTGACTAGTTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr2 | + | 174367987 | 174368008 | 5.09e-05 | 0.43 | acataaattataaaggggtcaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr14 | - | 91049765 | 91049786 | 5.53e-05 | 0.461 | CCATCTAGGTTTGTGTAAGTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr7 | - | 148878560 | 148878581 | 5.66e-05 | 0.465 | CTGCCAACAGGCGAATTAACAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | - | 89122773 | 89122794 | 6.04e-05 | 0.489 | CCATCTGTTGGAGAGTGAGTTC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr3 | + | 65538840 | 65538861 | 6.55e-05 | 0.523 | CCAACTACCAACAAACAGACAC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr12 | + | 14270384 | 14270405 | 6.74e-05 | 0.526 | ttgtcaatgaaggaaggaagaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr10 | + | 101546105 | 101546126 | 6.78e-05 | 0.526 | gtaccatcaatcaagtggatat |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr12 | + | 51551629 | 51551650 | 7.21e-05 | 0.543 | ctataaaccattaagaggggaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr17 | + | 29258678 | 29258699 | 7.23e-05 | 0.543 | ATATCAGCTAAGAATTAGTTAC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr13 | + | 95628635 | 95628656 | 7.27e-05 | 0.543 | ccaataacagatgaataagcaa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr4 | + | 111243084 | 111243105 | 7.4e-05 | 0.546 | cagtgagtgaatgggtgaataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | + | 40567294 | 40567315 | 7.62e-05 | 0.554 | tcaaaaataaataaataaataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr2 | + | 95220755 | 95220776 | 7.74e-05 | 0.556 | TCATCTAGCTTTGAAGGAACAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr6 | + | 3957925 | 3957946 | 8.13e-05 | 0.574 | acaccaatctgaatctgcataa |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr20 | - | 14396292 | 14396313 | 8.19e-05 | 0.574 | ACACCATTCTCTGAATGATTAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chrX | - | 69170732 | 69170753 | 8.43e-05 | 0.584 | GCATCAAATAGGGAATAGTTAC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr5 | + | 60817949 | 60817970 | 8.73e-05 | 0.591 | ccaccaatatgagacttgttta |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 180839873 | 180839894 | 8.73e-05 | 0.591 | ACACCAACTTTGGTATGCATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr12 | + | 1924724 | 1924745 | 8.94e-05 | 0.597 | CGGTCTGCCAAAGAGTGGATCC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr22 | - | 28947249 | 28947270 | 9.19e-05 | 0.607 | CTACTGACTGAAGAGTGGATAC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr10 | + | 33589193 | 33589214 | 9.34e-05 | 0.609 | tcaacagtcaaagacaggttta |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr1 | - | 154527812 | 154527833 | 9.58e-05 | 0.609 | CCAGCAGTATAAAAATGGGCAG |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr3 | + | 65539005 | 65539026 | 9.7e-05 | 0.609 | CCAACTACCATCAAACAGACAC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr3 | + | 65539059 | 65539080 | 9.7e-05 | 0.609 | CCAACTACCATCAAACAGACAC |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr19 | - | 30034616 | 30034637 | 9.75e-05 | 0.609 | GTACCAATTAAAAGACAAATAA |
CCATCAATCAATGAGTGGATAA | MEME-9 | chr15 | - | 68891506 | 68891527 | 9.9e-05 | 0.612 | TTAACAACAATCAACTAGATAT |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CCATCAATCAATGAGTGGATAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_7 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.