# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:05:39 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF211.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:05:39 PDT 2018) # host: surya # when: Thu May 10 17:46:02 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.319 C 0.182 G 0.188 T 0.311 MOTIF TGGTATAB DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TGGTATAB VTATACCA 350 40 1.4e-089 3.5e-085 # TGGTATAT ATATACCA 308 30 2.6e-079 6.6e-075 # TGGTATAG CTATACCA 38 5 7.9e-008 2.0e-003 # TGGTATAC GTATACCA 33 7 1.6e-005 4.0e-001 letter-probability matrix: alength= 4 w= 8 nsites= 554 E= 3.5e-085 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.075812 0.092058 0.832130 MOTIF AASAAAG DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AASAAAG CTTTSTT 138 26 1.5e-022 3.7e-018 # AACAAAG CTTTGTT 96 16 1.2e-016 2.9e-012 # AAGAAAG CTTTCTT 53 12 6.7e-008 1.7e-003 letter-probability matrix: alength= 4 w= 7 nsites= 161 E= 3.7e-018 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.627329 0.372671 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTTTRTC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTTTRTC GAYAAAG 92 16 1.4e-015 3.4e-011 # CTTTGTC GACAAAG 51 9 7.2e-009 1.8e-004 # CTTTATC GATAAAG 43 7 6.0e-008 1.5e-003 letter-probability matrix: alength= 4 w= 7 nsites= 97 E= 3.4e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.463918 0.000000 0.536082 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AKTGTTAG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AKTGTTAG CTAACAMT 43 0 5.2e-014 1.3e-009 # AGTGTTAG CTAACACT 34 0 3.6e-011 8.8e-007 # ATTGTTAG CTAACAAT 9 0 1.9e-003 4.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.3e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.790698 0.209302 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTGAYAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GTGAYAA TTRTCAC 52 5 1.2e-011 3.0e-007 # GTGATAA TTATCAC 29 2 1.7e-007 4.2e-003 # GTGACAA TTGTCAC 26 3 6.1e-006 1.5e-001 letter-probability matrix: alength= 4 w= 7 nsites= 57 E= 3.0e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.456140 0.000000 0.543860 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATTGTGG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AATTGTGG CCACAATT 28 0 2.7e-009 6.6e-005 # AATTGTGG CCACAATT 28 0 2.7e-009 6.6e-005 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 6.6e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GYTCTGAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GYTCTGAA TTCAGARC 27 0 5.5e-009 1.3e-004 # GCTCTGAA TTCAGAGC 19 0 1.7e-006 4.0e-002 # GTTCTGAA TTCAGAAC 8 0 3.8e-003 9.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.3e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.703704 0.000000 0.296296 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CHCAAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CHCAAA TTTGDG 170 93 4.8e-008 1.2e-003 # CACAAA TTTGTG 80 36 1.1e-005 2.7e-001 # CTCAAA TTTGAG 46 22 1.9e-003 4.6e+001 # CCCAAA TTTGGG 65 38 3.6e-003 8.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 208 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 0.461538 0.312500 0.000000 0.225962 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGTGRCT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AGTGRCT AGYCACT 43 6 1.6e-008 3.8e-004 # AGTGACT AGTCACT 25 1 3.2e-007 7.6e-003 # AGTGGCT AGCCACT 18 5 5.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 44 E= 3.8e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.590909 0.000000 0.409091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAAGGR DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AAAGGR YCCTTT 126 62 2.3e-007 5.4e-003 # AAAGGA TCCTTT 83 41 4.4e-005 1.1e+000 # AAAGGG CCCTTT 48 23 1.5e-003 3.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 133 E= 5.4e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.639098 0.000000 0.360902 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 38.40 seconds