# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF202.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF202.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF202.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF202.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:05:39 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF202.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:05:40 PDT 2018) # host: indra # when: Thu May 10 17:41:25 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.313 C 0.191 G 0.194 T 0.302 MOTIF AATAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AATAAATA TATTTATT 351 62 5.9e-074 1.5e-069 # AATAAATA TATTTATT 351 62 5.9e-074 1.5e-069 letter-probability matrix: alength= 4 w= 8 nsites= 1754 E= 1.5e-069 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTBTCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GTBTCA TGAVAC 241 25 9.5e-057 2.4e-052 # GTCTCA TGAGAC 192 14 2.2e-048 5.6e-044 # GTTTCA TGAAAC 55 8 1.9e-010 4.7e-006 # GTGTCA TGACAC 14 3 6.1e-003 1.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 294 E= 2.4e-052 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.761905 0.051020 0.187075 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTCY RGAG 527 363 2.1e-028 5.2e-024 # CTCT AGAG 413 277 1.1e-015 2.7e-011 # CTCC GGAG 343 249 3.6e-008 8.9e-004 letter-probability matrix: alength= 4 w= 4 nsites= 1680 E= 5.2e-024 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.451190 0.000000 0.548810 MOTIF CTGGGH DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTGGGH DCCCAG 167 63 8.9e-015 1.9e-010 # CTGGGC GCCCAG 92 30 1.4e-009 2.9e-005 # CTGGGA TCCCAG 47 19 2.7e-004 5.6e+000 # CTGGGT ACCCAG 42 17 5.9e-004 1.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 186 E= 1.9e-010 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.252688 0.521505 0.000000 0.225806 MOTIF GAGA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GAGA TCTC 185 77 1.9e-014 3.9e-010 # GAGA TCTC 185 77 1.9e-014 3.9e-010 letter-probability matrix: alength= 4 w= 4 nsites= 213 E= 3.9e-010 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCCACCR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GCCACCR YGGTGGC 58 9 1.2e-010 2.4e-006 # GCCACCA TGGTGGC 38 3 3.1e-009 6.2e-005 # GCCACCG CGGTGGC 20 6 4.3e-003 8.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 60 E= 2.4e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.650000 0.000000 0.350000 0.000000 MOTIF CCYGGCTA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCYGGCTA TAGCCRGG 32 1 2.7e-009 5.2e-005 # CCTGGCTA TAGCCAGG 23 1 1.2e-006 2.4e-002 # CCCGGCTA TAGCCGGG 13 0 1.1e-004 2.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 5.2e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.361111 0.000000 0.638889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTGTA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCTGTA TACAGG 46 8 3.7e-008 7.3e-004 # CCTGTA TACAGG 46 8 3.7e-008 7.3e-004 letter-probability matrix: alength= 4 w= 6 nsites= 46 E= 7.3e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GTGATCY DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GTGATCY RGATCAC 24 0 4.7e-008 9.2e-004 # GTGATCC GGATCAC 17 0 6.8e-006 1.3e-001 # GTGATCT AGATCAC 7 0 7.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 24 E= 9.2e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.708333 0.000000 0.291667 MOTIF CTYAGC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CTYAGC GCTRAG 57 15 1.5e-007 2.9e-003 # CTCAGC GCTGAG 44 12 6.7e-006 1.3e-001 # CTTAGC GCTAAG 14 3 6.1e-003 1.2e+002 letter-probability matrix: alength= 4 w= 6 nsites= 63 E= 2.9e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.761905 0.000000 0.238095 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGTGAGY DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AGTGAGY RCTCACT 23 1 1.2e-006 2.3e-002 # AGTGAGC GCTCACT 15 1 2.4e-004 4.6e+000 # AGTGAGT ACTCACT 8 0 3.8e-003 7.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 23 E= 2.3e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.652174 0.000000 0.347826 MOTIF ARTGGCG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ARTGGCG CGCCAYT 25 2 2.3e-006 4.3e-002 # AATGGCG CGCCATT 14 1 4.6e-004 8.7e+000 # AGTGGCG CGCCACT 11 1 3.1e-003 5.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 25 E= 4.3e-002 1.000000 0.000000 0.000000 0.000000 0.560000 0.000000 0.440000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 40.88 seconds