******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:22298326-22298826 1.0000 100 chr1:84753445-84753945 1.0000 100 chr1:120176302-120176802 1.0000 100 chr6:85642862-85643362 1.0000 100 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chr1:203861228-203861728 1.0000 100 chr13:44876844-44877344 1.0000 100 chr5:134039384-134039884 1.0000 100 chr9:126009012-126009512 1.0000 100 chr17:36148868-36149368 1.0000 100 chr12:12266939-12267439 1.0000 100 chr1:234486893-234487393 1.0000 100 chr19:36604746-36605246 1.0000 100 chr17:82153796-82154296 1.0000 100 chr16:30874931-30875431 1.0000 100 chr6:33123665-33124165 1.0000 100 chr5:177390449-177390949 1.0000 100 chr10:102422614-10242311 1.0000 100 chr12:10674060-10674560 1.0000 100 chr21:45645713-45646213 1.0000 100 chr1:37989848-37990348 1.0000 100 chr6:127266335-127266835 1.0000 100 chr6:18823734-18824234 1.0000 100 chr9:36991483-36991983 1.0000 100 chr15:68559575-68560075 1.0000 100 chr4:7238256-7238756 1.0000 100 chr20:2387148-2387648 1.0000 100 chr5:1594384-1594884 1.0000 100 chr6:131923340-131923840 1.0000 100 chr12:31271769-31272269 1.0000 100 chr20:48620439-48620939 1.0000 100 chr1:155050381-155050881 1.0000 100 chr7:116698898-116699398 1.0000 100 chr20:35619442-35619942 1.0000 100 chr7:151018058-151018558 1.0000 100 chr14:100377743-10037824 1.0000 100 chr17:18166850-18167350 1.0000 100 chr6:149026425-149026925 1.0000 100 chr16:30598103-30598603 1.0000 100 chr12:7995082-7995582 1.0000 100 chr19:44259495-44259995 1.0000 100 chr16:8567641-8568141 1.0000 100 chr16:4624159-4624659 1.0000 100 chr9:129131632-129132132 1.0000 100 chr5:149775743-149776243 1.0000 100 chr1:209747714-209748214 1.0000 100 chr5:141877102-141877602 1.0000 100 chr8:101756197-101756697 1.0000 100 chrX:73943974-73944474 1.0000 100 chr10:72274689-72275189 1.0000 100 chr14:92973180-92973680 1.0000 100 chr16:67928405-67928905 1.0000 100 chr1:201435687-201436187 1.0000 100 chr1:114346404-114346904 1.0000 100 chr17:1574359-1574859 1.0000 100 chr1:225777399-225777899 1.0000 100 chr1:234723932-234724432 1.0000 100 chr1:53541653-53542153 1.0000 100 chr5:1644813-1645313 1.0000 100 chr7:101244130-101244630 1.0000 100 chr5:112160560-112161060 1.0000 100 chr1:7975207-7975707 1.0000 100 chr19:40634435-40634935 1.0000 100 chr1:1375028-1375528 1.0000 100 chr9:14326238-14326738 1.0000 100 chr1:109493820-109494320 1.0000 100 chr10:101602731-10160323 1.0000 100 chr12:111304504-11130500 1.0000 100 chr1:156659868-156660368 1.0000 100 chr17:38444050-38444550 1.0000 100 chr15:89358592-89359092 1.0000 100 chr6:37141754-37142254 1.0000 100 chr19:38243749-38244249 1.0000 100 chr16:14289664-14290164 1.0000 100 chr1:212665216-212665716 1.0000 100 chr2:219541576-219542076 1.0000 100 chr19:36114140-36114640 1.0000 100 chr5:143013956-143014456 1.0000 100 chr5:173592012-173592512 1.0000 100 chr20:53609865-53610365 1.0000 100 chr20:38337622-38338122 1.0000 100 chr20:33947635-33948135 1.0000 100 chr14:100154950-10015545 1.0000 100 chr19:970610-971110 1.0000 100 chr1:20361744-20362244 1.0000 100 chr12:54032549-54033049 1.0000 100 chr12:132194005-13219450 1.0000 100 chr1:63523113-63523613 1.0000 100 chr19:5534862-5535362 1.0000 100 chr6:43321868-43322368 1.0000 100 chr18:50819775-50820275 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.209 C 0.291 G 0.291 T 0.209 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.224 C 0.277 G 0.277 T 0.224 ******************************************************************************** ******************************************************************************** MOTIF CAGCGCCMCCTDGTGG MEME-1 width = 16 sites = 265 llr = 2861 E-value = 2.5e-412 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 271112:5::12:1:: pos.-specific C 7:17:8a47a1132:1 probability G :28:8:::::147:a8 matrix T 11:21:::3:72:7:1 bits 2.2 1.9 1.7 * * * 1.5 * * * Relative 1.3 * * * Entropy 1.1 * * * * (15.6 bits) 0.9 ****** *** *** 0.6 *********** **** 0.4 *********** **** 0.2 **************** 0.0 ---------------- Multilevel CAGCGCCACCTGGTGG consensus CT TC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:970610-971110 - 14 4.92e-10 TCTGTGTCGA CAGCGCCACCTGGTGG CCACTATGAA chr8:141346836-141347336 + 60 4.92e-10 CCCAGGCCAG CAGCGCCACCTGGTGG TCATATGCCC chr8:41430035-41430535 - 28 1.10e-09 ACCCTGACTG CAGCGCCCCCTGGTGG AAGGACAGTC chr16:29848412-29848912 + 73 3.77e-09 AGGCGCCCTC CAGCGCCACCTGCTGG AGCACCCACA chr6:6546975-6547475 + 55 3.77e-09 CTTAGGCCAA CAGCGCCATCTGGTGG TTATGATCCG chr5:95858674-95859174 - 20 3.77e-09 GCGCGGGGTG CAGCGCCACCTGCTGG AATTCATGCG chr14:92714665-92715165 - 37 3.77e-09 CACTTTGAAG CAGCGCCATCTGGTGG AAGCCCTGGT chr12:111304504-11130500 - 32 7.11e-09 CGGTGTTCAA CAGCGACACCTGGTGG CAGCCACCAA chr20:48620439-48620939 + 13 7.11e-09 CCCTGGCCCA CAGCGCCATCTAGTGG CCGTCACTTC chr14:74905603-74906103 + 47 7.51e-09 ACCGTGTCAG AAGCGCCACCTGGTGG TGACTGGGAT chr5:173592012-173592512 - 34 1.28e-08 TGGTGTTCAA CAGTGCCACCTTGTGG TGAAGAGAAG chr12:124469106-12446960 + 69 1.28e-08 CTCAGTCCCA CAGCGACCCCTGGTGG TCGCTTCAAG chr3:13461488-13461988 + 77 1.28e-08 cggtgttctg cagcgccctcttgtgg cagcagca chr6:131923340-131923840 - 14 1.50e-08 CCATGTCCAA CAGCGACACCTTGTGG CAATGACTTA chr5:177390449-177390949 - 24 1.50e-08 ACTGTGCCAG CAGCACCACCTGGTGG CGAAAAGGAG chr16:50671597-50672097 - 43 1.50e-08 ATCTGTTCAA CAGCGACACCTTGTGG TAAAAACTGT chr20:58209753-58210253 + 76 1.50e-08 CTGCGTTCGA CAGCGCCACCTGGCGG GAGCCGACG chr19:38243749-38244249 - 41 1.71e-08 CGTGAGGCCT CAGCGCCCCCTCGTGG CTATGTGAAT chr1:203861228-203861728 - 6 2.63e-08 GCCGGTCCTA CAGCGCCACCTGGAGG GAGGC chr9:129131632-129132132 - 21 3.04e-08 CACGGGGCAT CAGCTCCCCCTGGTGG ACCACAGCAG chr6:33123665-33124165 - 25 3.04e-08 GCTAAGCCAA CAGCACCACCTAGTGG AAATAAAAAT chr10:133318570-13331907 + 68 3.55e-08 TGTCTGGCTG CAGCGCCACCTCCTGG AGGCGTCAGC chr1:6041402-6041902 - 26 4.50e-08 TGCTCTGCAG CAGCGCCACCCGGTGG CCACGGGGCA chr5:133460097-133460597 + 44 4.50e-08 GGGGGGATGA CAGCGCCACCTAGTGT GCAGCTGTCT chr6:127266335-127266835 + 16 5.37e-08 GATTTTTGAG CAGCACCACCTGCTGG TCCTACACAC chr11:62311090-62311590 + 36 5.37e-08 CGCTGCGCCA CAGCACCACCTGCTGG TCAGGAGACT chr17:40560190-40560690 + 53 5.37e-08 TCCTTGGCCA CAGCACCACCTGCTGG AAGCCTCCCT chr22:42779988-42780488 - 74 6.02e-08 GAAAGCCAGT AAGCGCCATCTAGTGG CAAGGGGATG chr19:39412573-39413073 + 62 6.02e-08 TCCAGGTGCG CAGCGCCCCCTCCTGG AGCAGCCGGG chr5:135560763-135561263 - 11 6.02e-08 GAAAGGTCGA AAGCGCCATCTTGTGG TGCCTTTGCA chr11:75451391-75451891 + 55 6.02e-08 CCCCGGCGCG CAGCTCCCCCTTGTGG CCATCGTGGG chr18:47997427-47997927 + 63 7.30e-08 tagtgaccag cagcgcccccatgtgg ctgcaatgga chr22:50498120-50498620 + 49 7.30e-08 ACCGTGTCCA CAGTGCCCCCTTCTGG AAATTCTCCA chr10:84429894-84430394 - 8 7.30e-08 AGCAAACACA CAGAGCCCCCTGGTGG AGGCTGG chr16:14289664-14290164 + 49 8.82e-08 gcaagttcaa cagtgacaccttgtgg aggcatgaag chr5:1644813-1645313 + 42 8.82e-08 ACACGGCCCA CAGCGCCACCGTGTGG TCTCCGCGTC chr6:18823734-18824234 + 50 8.82e-08 cagtgttcaa cagcgccaccgtgtgg cagccttaga chr15:63610104-63610604 - 21 8.82e-08 TTTAGGTCAT CAGAGCCACCTAGTGG CACCTCCCTT chr17:18625549-18626049 - 24 8.82e-08 GCTGGAGCTA CAGCGCCACCTGCAGG CCAAGGAGTC chr2:128469137-128469637 - 42 8.82e-08 TTGTGTTCAA CAGTGACACCTTGTGG CTACAACAGA chr8:42412301-42412801 - 17 1.02e-07 GCAGCAACAA CAGCGGCACCTGGTGG GGTCGAGTTT chr3:47837645-47838145 - 17 1.02e-07 TGCTCGTCCA CAGCTCCCCCTGCTGG CGCATGCTGC chr5:138449884-138450384 - 49 1.02e-07 AGGGAGGCAG CTGCGCCACCTAGTGG GCTTTTCCAT chr16:1194519-1195019 + 69 1.02e-07 CGCAGGCCCC AGGCGCCACCTGGTGG CTGCTTTCAG chr2:177263430-177263930 - 22 1.13e-07 AGTTCGGACG CGGTGCCCCCTGGTGG CGCTCACCGC chr1:155050381-155050881 + 33 1.39e-07 CACCTCCCAA CAGCGCCACCCGCTGG CGGATATCCT chr10:95374552-95375052 - 48 1.39e-07 CCTGGATGAA CAGCGCCACCTAGTGA CCAGTGGAGA chr1:201704132-201704632 + 40 1.39e-07 TGAGGACCGG CAACGCCCCCTTGTGG CCATTCTCAG chr19:40634435-40634935 + 58 1.62e-07 CCCAAGCCGG CTGCGCCCCCTAGTGG CCGATGCTCG chr20:64145405-64145905 + 59 1.62e-07 cggtgttcca cggcgacaccttgtgg ttgcaatggc chr5:139517865-139518365 - 34 1.62e-07 CTGCTGAGAG CAGCGCCCTCTAGCGG AGGCCGGGCC chr10:122053984-12205448 - 30 1.82e-07 TAAGTTACAA CAGCGCCACCACGTGG CAACCAGAAA chr19:5515655-5516155 - 46 1.82e-07 TATTGTTCAA CAGCAACACCTTGTGG CAGCCACAGA chr17:38444050-38444550 - 26 2.13e-07 CCGTGGCCAG CAGAGCCCCCTGCTGG CCCAGCGCTG chr1:156659868-156660368 - 40 2.13e-07 GCTGGGTCCG CGGCGCCCTCTGCTGG CCGCTGCCTG chr9:122379276-122379776 - 38 2.13e-07 TGGCATTCAA CAGTGCCACCATGTGG CAGGAACTGG chr6:44074441-44074941 + 73 2.13e-07 AGTCTTTTGG CGGCGCCCTCTGCTGG CCACTAGGAA chr19:5534862-5535362 + 61 2.50e-07 ACCATGCTAC AAGCTCCACCTTGTGG CCAGCCTGGT chr20:33947635-33948135 - 27 2.50e-07 CAGTCTTCAA CAGCGACACCATGTGG CAGTGAGGAG chr10:96229449-96229949 - 63 2.50e-07 TGCACTGCAG CTGCGCCCCCTGCTGG CTGCGCACGC chr13:112942669-11294316 - 18 2.50e-07 TCCTGCCCAA CAGCACCCTCTGCTGG CATGTGGGGA chr12:82685628-82686128 - 35 2.50e-07 TACACTACTG CAGCGCCCCCTGCTGC ATAGTAACCA chr11:10792387-10792887 - 43 2.50e-07 CGCTGTCCCA CAGCGCCCTCTGCCGG GATGCTGGGA chr4:40325340-40325840 + 59 2.50e-07 AGGGAGTTTA CAGAGACACCTGGTGG CTGAGAAGGT chr5:127313779-127314279 + 63 2.50e-07 CCCTGAGCTG AAGCGCCACCTCCTGG CGGAATAGGT chr1:84753445-84753945 + 79 2.50e-07 AGCGGAACAA CAGCGACACCAAGTGG CCAGTC chr3:159252708-159253208 + 65 2.87e-07 TTTGGGTACA CAGCACCATCTACTGG GTAGTACAGG chr17:74085368-74085868 + 69 3.83e-07 cagtctccaa cagcgacatcaggtgg cagtgggaag chr11:76799165-76799665 + 46 3.83e-07 TCCCGGCCCG CAGCGCCACCTCGTGC TCACGCATGG chr12:132194005-13219450 + 60 4.40e-07 ccatcttcaa cagcgacaccgtgtgg cagcagatgc chr20:38337622-38338122 - 43 4.40e-07 AGCTTTTCAA CAGCGACACCGTGTGG TAGTGACGGG chr13:44876844-44877344 + 69 4.40e-07 tcgtctccaa cagcgacaccgtgtgg cagctacgcc chr11:69950034-69950534 - 33 4.40e-07 CAGTGTTCAA CAGCGACACCCTGTGG TGGCAACAGA chr20:23235344-23235844 + 60 4.40e-07 ccgtctccaa cagcgacaccgtgtgg caggaagaag chr10:101050203-10105070 - 25 4.40e-07 CCAAAGTCTG AAGCGCCCCCCGGTGG GGGCCGAGAG chr17:76182086-76182586 + 61 4.40e-07 CACATCGGCA AAGCGCCACCTGGTGA CGAAAGATGA chr5:112995989-112996489 - 15 4.40e-07 TTTTATACCG CAGCACCACCAAGTGG CAGAAGGACA chr19:29694554-29695054 - 10 4.40e-07 CTGTGGTGGG AGGCGCCCTCTGGTGG GCCAGCCAG chr9:36991483-36991983 + 68 4.99e-07 cctgggtcga tggtgccacctggtgg ctggtgctgg chr1:39609528-39610028 + 52 4.99e-07 gcagtgttca aagcgccctctggcgg ccgggaggag chr10:100433747-10043424 - 59 4.99e-07 CTTAGAACAG CAGCGCCACATTGTGG AGAGAAACAA chr6:70955875-70956375 + 25 4.99e-07 TCCAGTGCAG CTGCGCCACCTGGCGG AACGTGTTGG chr5:141618973-141619473 + 79 4.99e-07 CGGCGGAGAG CACCGCCCCCTGGCGG TTGGAG chr5:134039384-134039884 + 61 5.72e-07 cgtaatttta aagctccctctggtgg ttctactgAG chr7:129829921-129830421 + 58 5.72e-07 GACTGAGCGG CATCGCCATCTGGTGG TAACTAAAGG chr9:34591606-34592106 + 50 5.72e-07 CCCGGGGCCG AAGCGACACCTGGCGG ACGGTGCGGG chr17:76523028-76523528 - 39 5.72e-07 CGCAGCCCCA CAGCGTCCCCTGCTGG CCGCGGAGGG chr17:80196010-80196510 - 54 5.72e-07 CGCAGGGCAC TTGCGCCCCCTGGTGG CCATGGGGTG chr5:143013956-143014456 - 38 6.57e-07 AACACGCCCA CAGCACCGCCTGGTGG TTCACACCTG chr19:50357026-50357526 - 10 6.57e-07 AACAGGCCCA CACCTCCACCTTGTGG CCAATTGGG chr12:98566769-98567269 - 37 6.57e-07 CTGAGTTTCA CAGCGACATCTAGTGT ACTCTTTTTG chr1:7975207-7975707 - 39 7.46e-07 CTGCAGCCAA CAGCACCACCCTGTGG TAACATGCAA chr17:1574359-1574859 - 53 7.46e-07 CACAGGCCCA CAGCACCCCCTGCCGG CGGGCTCCGT chrX:153539435-153539935 - 27 7.46e-07 ACCAGACCCA CACTGACACCTGGTGG ACAGACAGCA chr1:20361744-20362244 - 34 8.43e-07 TGCACGCCCA CAGCGCCCTCTGCTGA ACGGTATCAG chr8:42152457-42152957 + 47 8.43e-07 ACACATACTC CAGCGCCCCCTCCAGG CGCACTCCGC chr10:43078819-43079319 + 68 8.43e-07 GCTCGGCCTC AAGCGCCCTCTTGCGG ACGCTGCACT chr5:149656520-149657020 - 50 8.43e-07 TTCTTTTCAA CAGTGCCCTCATGTGG CAGTGCCAGA chr8:74171321-74171821 + 56 9.62e-07 cagtgttcaa cagtgacaccatgtgg tggggatgaa chr20:38242799-38243299 + 47 9.62e-07 cagtgttcaa cagtgacaccatgtgg caacaacgga chr2:70341141-70341641 - 16 9.62e-07 CACATGACAA CAGTGCCCTCTAGAGG AGTACTTTTC chrX:68462578-68463078 + 84 1.10e-06 atggtgatga aagtgacctctggtgg t chr17:17568641-17569141 + 49 1.10e-06 ACCTTGCCCA CAGCGCCACCTACCGT CTGGCCACCC chr5:147453784-147454284 - 52 1.23e-06 GAAAAGCCCC TCGCGCCCCCTGGTGG CTGTGGAGCA chr16:30187223-30187723 - 54 1.23e-06 CTGTGTCCCA CAGCGCCACCTGCCGC TCACTCATGC chr15:73636393-73636893 + 56 1.23e-06 CCGTTGCTGA TCGCGCCCCCTGGTGG AAAGGTCTGG chr16:30953564-30954064 - 53 1.23e-06 ACACAGCCTG CAGCTCCCCCTGCAGG CGATTCAGTT chr19:34501449-34501949 + 83 1.23e-06 GGCATGGCGC GGGCGCCACCTGGTGG GC chr14:100154950-10015545 + 46 1.40e-06 tcagggttga cgatgccacctggtgg ccacagcagg chr20:2387148-2387648 - 40 1.40e-06 CAGTGTTCAA CAGTGACCCCATGTGG CACGAGCTGG chr6:2482726-2483226 + 48 1.40e-06 taagcttcaa cagcgccaccatgtga caagaagcaa chr2:190382820-190383320 - 30 1.40e-06 ACAAATCTGC TAGAGACACCTGGTGG AGAGTGTTGA chr5:149268885-149269385 + 61 1.40e-06 aactagtcaa cattgccacctagtgg acattatggg chr9:34379253-34379753 + 56 1.40e-06 TCCATGCCAC TAGCTCCCCCTCGTGG TATGTGCCTG chr12:110469039-11046953 - 62 1.40e-06 GCAGGGCTCG CAGCGCCCCCTCGGGG CAGAGAGATG chr1:18820690-18821190 + 52 1.58e-06 ATGGGGCCAA CAGCACCATCTGCTGT CAGCTTCTGG chr16:25233632-25234132 - 63 1.79e-06 CCTCTTCCAA CAGCGGCACCATGTGG CAGCGGAGAG chr6:166951279-166951779 + 66 1.79e-06 cactagacca aagagccctctagtgg ccctgtccgg chr10:97463572-97464072 - 12 1.79e-06 TGGTGTTGAA CAGCACCACCCTCTGG GTATTGGTGG chr6:13795038-13795538 - 35 1.79e-06 TCTTGTTCCA CGCCGCCCTCTAGTGG TGATCTGATG chr10:117216577-11721707 - 38 1.79e-06 GGAGCTTGGG ACGCGCCACCTGCTGG CGCAAAGCTT chr16:712802-713302 - 34 1.79e-06 GCATGAGCCA CGGCACCCCCTGGCGG TGGGTCCATT chr2:126886260-126886760 + 22 2.00e-06 TGCCGCCCCA CAGCGCCCCCTCGCGT GCGCCAGCCA chr19:35135336-35135836 + 16 2.00e-06 TCACGTCCAG CTGCTCCCTCTGGTGG TCATACTCGG chr22:19144636-19145136 - 26 2.00e-06 GCCACCTCCA CAGCACCCCCTCGTGT TCACAGCATT chr15:100869469-10086996 + 59 2.00e-06 cctgggttaa tgacgccacctggtgg ctggtgtcgg chr10:72274689-72275189 - 23 2.26e-06 AGACGTCCAG CAGCGCCCCCCGCAGG CCGCACGGCT chr4:7238256-7238756 - 33 2.26e-06 TCTGAGCTCA CAGCGCCACCCAGTGA CCAGTGAGAA chr15:66862763-66863263 + 45 2.26e-06 GGGATGTCAG AGGCGCCCTCTCGTGG TCAATATTGG chr10:77719538-77720038 - 1 2.26e-06 ACACCTTCCA TAGCGACACCGTGTGG chr1:84620619-84621119 + 25 2.26e-06 GGCGGGCCCG CGGCGCCCTCTGCAGG GAAGCGGGTG chr16:67928405-67928905 + 46 2.55e-06 AGCTGCACGA AGGCGCCATCTGGTGT CTGCATGGGT chr10:102422614-10242311 + 36 2.55e-06 GCGGGTGCGG CACTGCCACCATGTGG CGGAGTCCAG chr1:41444206-41444706 - 29 2.55e-06 ATGTCTTCAA CAGCGACCCCATGCGG CAGCAATAGA chr19:33406728-33407228 + 79 2.55e-06 CCTGAGACAA CACTGCCCTCTTCTGG CCAGTT chr8:27592139-27592639 + 51 2.55e-06 CGTGAGCCCG CGCTGCCCCCTTGTGG CCAAAGCCCT chr9:33466528-33467028 + 72 2.55e-06 GCAGAGCCAG CACCGCCGCCTGCTGG ACATGCCAGG chr17:18166850-18167350 - 39 2.85e-06 CATGCTTCAA CAGTGACACCACGTGG CCACAAAATC chr7:151018058-151018558 + 54 2.85e-06 ACTGCAGCAG CTGCGCCATCTGCCGG TAGGCGCGGT chr12:106282308-10628280 + 61 2.85e-06 cctggcctac ttgctccacctggtgg tcaatgtgag chr19:33184198-33184698 + 14 2.85e-06 ctagaagcag cagcgccatctatcgg acgctaattc chr22:20885442-20885942 - 21 3.20e-06 TGTGCACCCT CAGCACCTCCTAGTGG CGGGCAGTAC chr22:41597190-41597690 + 67 3.20e-06 TGCAGGGCCA CAGCGCCACCTGGTAT CCATCACTCT chr21:7798482-7798982 - 23 3.20e-06 CGGTGTTCAA CAGCGTCCCCATGTGG CAGCTAGAAG chr17:32253015-32253515 - 3 3.20e-06 CCTGGAGCCA CAGTGTCCTCTAGTGG GA chr1:110196856-110197356 - 29 3.20e-06 GCCTGGCTGA AGGCTCCCCCTGCTGG AAAAGCAGTA chr17:36148868-36149368 + 63 3.58e-06 GGCAGGCCCA TTGCGCCATCTACTGG CAATCACTGT chr14:68926132-68926632 + 66 3.58e-06 CCTGTGCCAA CAGCACCAGCTAGTGG CTCAAACAGG chr10:119139415-11913991 - 25 3.58e-06 CGCAGTCCAA CAGCATCCCCTGCTGG CACTGCCTGG chr14:92973180-92973680 - 29 4.01e-06 TCCAGACCCA CAGCGCCACAGGGTGG CCAGGCGGGA chr17:40113050-40113550 - 31 4.01e-06 GACTGAACAA AAGTGCCCCCTTCAGG GTGAATGTGG chr5:61357695-61358195 + 59 4.46e-06 CCTTGGTTGT TAGCGCCATCTTATGG CAGACGTGGG chr12:51341295-51341795 + 77 4.46e-06 CTATGTTTAA CAGCAGCATCTGCTGG TGGGACAT chr22:38114427-38114927 - 40 4.46e-06 GCAGACAGAG AAGCGCCCTCTAGGGG CCAGATCGGG chr17:32936835-32937335 + 65 4.98e-06 ACTAAGTTTG TGCTGCCACCTGGTGG CTGGTATGCC chr8:28072701-28073201 - 29 4.98e-06 CAGTTTTCAA AACTGACACCTTGTGG CAGCAAGAAG chr7:101244130-101244630 + 41 5.55e-06 TACCGAGCGG AGATGCCACCTGGTGG CAGCTCCAGG chr17:82153796-82154296 + 52 5.55e-06 CCATGGCCAA CACTGCCCCCCAGTGG ACCCAGGGAT chr22:43060151-43060651 + 55 5.55e-06 ccctgctcca cagcgccccacggtgg gcagaggcct chr9:128035085-128035585 + 70 5.55e-06 TTTGGTTATC TAGCACCACCTACAGG ATATATTGAG chr6:2448724-2449224 + 6 5.55e-06 TACAA CAGCACCCTCCACTGG TCGCTAAAGG chr16:30054951-30055451 + 44 5.55e-06 GCGCGGACGG TAGCTCCCCCTGCAGG AAGCAAGGTT chr3:48435858-48436358 + 66 5.55e-06 GCTGAGCCAA CAGCACCCTCCTCTGG CCAAACCACA chr6:111997053-111997553 + 64 5.55e-06 ATGTGATCAA CAGCGACCTCTAGCGT GAGCCTGAGA chr22:23929977-23930477 - 28 5.55e-06 TGCTGGACAA AGGAGCCCTCTGGTGG CCCTGTCCGG chr7:96414862-96415362 - 47 5.55e-06 CAGAGTACAA CAGCACCGTCTACTGG ACAAAGGCTG chr7:140517857-140518357 - 29 6.17e-06 GAAGGGACAG TGATGCCACCTGGTGG CCGAGGCCAT chr16:87635412-87635912 + 53 6.17e-06 GCTGTGGCTC GAGTGACACCTGCTGG CGGCCTCATC chr12:10674060-10674560 + 68 6.86e-06 TACAGGGCAA CAGCGCCACCTCACGG CCGGCCCCGT chr6:35294286-35294786 - 32 6.86e-06 CTGTGGCCAA CAGTGCCACCTGTTGA TGACGAAGAG chr1:225474924-225475424 - 19 6.86e-06 GGTGGCGCTC GAGCGACCCCTGGCGG TCATGCTCGG chr9:133532960-133533460 + 74 7.61e-06 TGATTCAGCA CAGCGACCCCAGGGGG CAGTGtgggc chr19:14217327-14217827 - 8 7.61e-06 AGCAGCGGGG AAGCGGCCCCTAGCGG CCGGGGA chr14:103520955-10352145 - 80 7.61e-06 TCCCT CTGCGCCCTCTCGCGG CGTCCTCCCT chr5:169850349-169850849 - 40 7.61e-06 CCCAAGCTCA CAATGCCACCTTTTGG CTACAAACTG chr17:80575280-80575780 + 41 7.61e-06 catgtgcgaa tggcgccccctcgtgt tgtggatggt chr5:149775743-149776243 + 42 8.44e-06 CCAAAGCCAG TATTGCCCCCTAGTGG TTAGCATCAA chr9:126009012-126009512 + 45 8.44e-06 cagtcttcaa cagtggcaccgtgtgg ccgagagaag chr22:50241057-50241557 - 19 8.44e-06 CACTAGACTA AGGAGCCCTCTAGTGG CCCTGTCTGG chr10:71956060-71956560 - 2 8.44e-06 CGCTAGACCA AGGAGCCCTCTAGTGG C chr1:53185615-53186115 + 77 8.44e-06 cgctagacca aggagccctctagtgg ccctgtct chr12:122335982-12233648 - 31 8.44e-06 ACTGGGCCGT AGGCGCCCTCTGTTGG CGAGGCAGGA chr14:100377743-10037824 + 71 9.35e-06 TGCTGTTCCA CCGCGCCCTCTGCTGT CCTAGGAGTG chr19:48826677-48827177 + 71 9.35e-06 TCATGTTCAA CAgcgcccccgccagg ctttcctgcc chr4:157045454-157045954 + 58 9.35e-06 cagttgtcaa cagggacaccatgtgg tagggagaag chr2:96507950-96508450 + 65 9.35e-06 GCAGAGACTG AGGCGGCCCCTGCTGG CGGCGGTCAG chr1:180252583-180253083 - 26 1.04e-05 TCCACACCAA CATCGCCCCCTGCTGC CAGTTACCAG chr1:226547648-226548148 - 14 1.04e-05 AGTGAGGACA CAGCGCCGTCTGGCGT TAATAATGGG chr11:57619268-57619768 - 38 1.04e-05 AAGCCTTCAA CAATGACACCAAGTGG CAGCAAAGAC chr12:3202871-3203371 + 84 1.14e-05 cccaccccca ccctgccacctgctgg c chr1:168082165-168082665 + 61 1.14e-05 ACAGCCACAC CGCTGCCACCTAGTGT CTAAGGGCCT chr1:53125522-53126022 + 57 1.14e-05 CTGCGTTCCA CAGGGCCACCCCGTGG AGGGAACCAG chr6:112337123-112337623 - 27 1.14e-05 CTGTGTTGCA CACTGCCATCTACTGT GTCTCTGCAG chr5:142699009-142699509 + 76 1.14e-05 GCTTGTCCAA CACTGCCCTCTGCAGG TCactgggc chr8:42140547-42141047 + 77 1.26e-05 TCACACCCAA CAGCACCACCTTCCGA GACTAGCG chr13:93248495-93248995 - 23 1.26e-05 CGCTGTGCAG CAGAGCCTCCTTCTGG GCATCCGTGG chr22:29701212-29701712 - 3 1.40e-05 GCCGTTTCCC CAGCTCCCCCTGCAGC TA chr6:151324169-151324669 + 41 1.40e-05 GTGTGGTGCA TCGCGCCCCCTGGTGC CCAAAAAGTG chr19:43950895-43951395 + 1 1.40e-05 . CACTTCCCCCTGGAGG GTAAAACTGT chr22:20564263-20564763 - 51 1.40e-05 GCTGCTGCTG TAGCGCCGCCTGCTGC TGCTGCTGGA chr1:225777399-225777899 - 54 1.54e-05 CCGGCTGCCA CAGCGCCCCCGGTAGG GCTGAATGAG chr19:35643379-35643879 + 26 1.54e-05 CGGGCCCGGA CTGTACCACCTCCTGG AACCCGGGGC chr15:66851142-66851642 + 17 1.54e-05 GCACCGTGGC AGGCTCCCTCTGGCGG CCGTGTGGAG chr20:1900259-1900759 - 41 1.54e-05 TGGATCCAGA TAGAGACACCTAGAGG CAGGCTGTGC chr5:138178831-138179331 + 63 1.54e-05 ATCTGTAACA AAGCTGCACCTCGTGG GCGGAGTTGT chr1:87325947-87326447 - 3 1.54e-05 ACTTTTACCA CAGCGCCACCTCTGGG TA chr17:30340041-30340541 - 55 1.54e-05 TGTGTATGAA AAGGGACCTCTAGTGG TCAACTGCAA chr1:33298559-33299059 + 79 1.69e-05 ACCGCCTACC AAGAGCCCTCCAGTGG CTGCTG chr3:55405430-55405930 + 34 1.69e-05 ccatctccaa caacggcaccatgtgg tagcacaagg chr1:1375028-1375528 + 30 1.86e-05 TTCCTACGCA CAGCGCCCGCTGGCGT CCTCGCGGCC chr5:1594384-1594884 - 41 1.86e-05 CCTATCCCCA CAGCGCCACCGTCCGC AGGTGCGCTT chr16:86019365-86019865 - 25 1.86e-05 CAGTGTTCAA CAGCGACACAGTGTGG TCACCACTGG chr5:188535-189035 - 28 1.86e-05 GGCTCCTCTG CGAGGCCACCTTGTGG TGCAGAGTGG chr13:27481736-27482236 - 18 2.05e-05 TACTCTTCAA CACTGACACCACGTGG CAACCACCGG chr10:100342272-10034277 - 67 2.05e-05 ACTAGCCCCA CACCTCCCTCTGTTGG CAGACATCTG chr5:6820799-6821299 - 41 2.05e-05 CGTGGGATGG TGGCGACCTCTAGAGG CCACACTTAG chr19:48107254-48107754 - 44 2.05e-05 CCCAAGACCA AGGGGCCCTCTAGTGG CCCTATTCGG chr15:89358592-89359092 + 37 2.25e-05 GCTGCGAGGT CAGCACCGCCGACTGG AGCACTCGGG chr6:27251651-27252151 - 30 2.25e-05 CCAGTGCCTG CAGCGCCCCCAACAGC TCCGCCTGGT chr10:79562100-79562600 - 3 2.25e-05 GGCGAGTGCA TGGTTCCCCCTGGCGG TC chr8:101756197-101756697 + 66 2.47e-05 ccgtgttcaa cagcgccactgtgtgg cagtgaaaag chr9:129006671-129007171 + 39 2.47e-05 CTCACGCTGC AGACGCCCCCTAGAGG AACTTTCCTT chr6:125956541-125957041 + 22 2.47e-05 CAGCGCCATT GCGCGCCCTCTAGTGG CAGCCGGTTT chr17:74437608-74438108 - 39 2.47e-05 CCTGGTCTGA CAGTGACCACTAGTGG CTGGCAGGGG chr12:12266939-12267439 - 82 2.71e-05 GGA ATGCGCCACCGGGAGG AGGCTTTCCC chr1:234486893-234487393 - 41 2.96e-05 GCGCTGACAA CAGCACCATCTAATGT CCAGAGAAAT chr19:16631392-16631892 + 64 2.96e-05 tagtcttcca cagcgacaccttgtaa tagccaggag chr16:4624159-4624659 + 32 3.24e-05 GCAGGTGCAG CTACGCCCTCTGCCGG TCGGGGCGGG chr11:2532650-2533150 - 23 3.24e-05 TACCTCCCCG AAGCGCCCCCAACCGT CCTTCCTGCA chr22:37933810-37934310 + 69 3.24e-05 CTCAGAGCCA CAGCGGCGCCCTGTGG CCAGAGCGGG chr3:14791279-14791779 - 19 3.24e-05 GCCAGTGCAG AGACGCCCCCCAGTGG ACTGGAGGTG chr6:90286843-90287343 - 35 3.55e-05 GTTGAGTTGA TGGCTCCATCTAGTGC CAGTCTGTGG chr19:37371260-37371760 - 40 3.55e-05 AACACATACA CAGCTACACCTGCAGA GACAGTCACA chr17:44350679-44351179 + 51 4.23e-05 GCAGGGTTCA TGCTACCCCCTAGTGG GGGATTGGGG chr10:101602731-10160323 - 27 5.03e-05 TCCTGGCCAA CAGCGCCACCTATGGC TGGATGTGCG chr6:131628058-131628558 + 30 5.03e-05 CAGAAACCAG CGGCGCCACCAGAAGG TTCCGTCTGT chr21:45555916-45556416 + 4 5.48e-05 CAG CAGGGTCCCCTCCTGG CCACAAGGAC chr12:123232757-12323325 - 30 5.48e-05 GACACTGTCT TAGCGGCCCCTTGAGT GTGGTGATGG chr19:11381905-11382405 - 61 5.96e-05 CACACATACA CACTGCCCCCCACAGG CCGGGCAATG chr10:93126406-93126906 - 34 6.48e-05 ATTGTGCCAG TGCTGCCCCCTGGTGA CAGATATGAA chr12:53675998-53676498 + 35 6.48e-05 ATCCGGCCGG TTGCTCCACCTGGCGT TCGAGAGGAG chr5:6765618-6766118 - 44 6.48e-05 GCTGAGGCAA CAGCGCCCCCTTCTTC TCAAGGGTGA chr8:38425587-38426087 + 64 6.48e-05 ACCTCTCCAA CAACGCCTCCTTCAGG ACAGACTCTG chr6:149026425-149026925 + 48 7.04e-05 tctggttcaa tagcgccacctagcat ccagacatag chr12:106357648-10635814 - 73 7.04e-05 CAGTCGGGAT CGGCGCCGCCAGCTGC TCCGGAGTCA chr1:93078897-93079397 - 65 7.64e-05 ACACCGCGCC CTGCGTCCCCGACTGG GGCTGAACAA chr1:53470084-53470584 - 26 8.29e-05 ACTGCTGCCG TCGCGCCCTCTCCCGG CGGCGCCCTG chr7:100559691-100560191 + 55 9.74e-05 CTAGGGATGG TTCTGCCCCCTAGTGT CCACAGGGAG chr1:204516293-204516793 - 47 9.74e-05 CCTCACTCTC CAGCTCCCGCTCCCGG CACCCCGCCG chr6:130020964-130021464 + 49 1.14e-04 ACTGGCCAAG GGGAGACCTCTAGTGG TTGAACGCGT chr15:72473614-72474114 + 10 1.23e-04 AGAATCACA CAGCTACCTAAAGTGG GTTCACCTGT chr5:95554962-95555462 - 63 1.23e-04 CCGGGCCAGC CGCCTCCCTCTGGCGT TCTCTCCCTA chr15:64387530-64388030 + 9 1.33e-04 ACTGGAGG CGGTGCGACCTTGCGG GGCGGTGCAA chr12:123601781-12360228 - 75 1.44e-04 CCGCTTCCCG CAGCTCCAGCGGCCGG CCGGGAACTT chr1:45303860-45304360 + 59 1.44e-04 CCGCGGCCCC GCGCGCCCTCCAGTGG CGTCATCCCA chr3:195850817-195851317 + 54 1.44e-04 acgaggacag tgatgtcccctagtgg acagtgtggg chr2:27370148-27370648 + 42 1.67e-04 GCAGGGTCCA CAGCGCCACCTGGGCT GGAGGCTGAG chr1:43946282-43946782 + 50 1.67e-04 AGTTGGGCCG CAGCGCCCCGCGCCGG TCTGACCCGG chr17:58631467-58631967 + 79 2.09e-04 agaacacaaa tatctccctctcgcgg tttcca chr17:44014673-44015173 + 71 2.25e-04 AACCTATCTT CGACGCCATCTTGGGA AAGGGCAGTC chr9:133417916-133418416 + 25 2.41e-04 CCGCCTTAGC CAGCGGCATCCGGGGT CATCGACCTC chr3:194672259-194672759 + 62 2.59e-04 TTCGCGGCAC TAGCTCCGCCTTCCGC TGCTTCCGTC chr17:41688763-41689263 + 25 3.43e-04 ccgccaccgc cgccgccgccTTCCGC AGGCCGTTTC chr7:102572220-102572720 - 34 3.93e-04 GGCGAGAAGT AAGTGACGCCGGCTGC GGAGGGCCGA chr19:37655841-37656341 + 63 1.02e-03 GTGACGGCCG CCGCGCCCCCGCGTAC CTGGACCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:970610-971110 4.9e-10 13_[-1]_71 chr8:141346836-141347336 4.9e-10 59_[+1]_25 chr8:41430035-41430535 1.1e-09 27_[-1]_57 chr16:29848412-29848912 3.8e-09 72_[+1]_12 chr6:6546975-6547475 3.8e-09 54_[+1]_30 chr5:95858674-95859174 3.8e-09 19_[-1]_65 chr14:92714665-92715165 3.8e-09 36_[-1]_48 chr12:111304504-11130500 7.1e-09 31_[-1]_53 chr20:48620439-48620939 7.1e-09 12_[+1]_72 chr14:74905603-74906103 7.5e-09 46_[+1]_38 chr5:173592012-173592512 1.3e-08 33_[-1]_51 chr12:124469106-12446960 1.3e-08 68_[+1]_16 chr3:13461488-13461988 1.3e-08 76_[+1]_8 chr6:131923340-131923840 1.5e-08 13_[-1]_71 chr5:177390449-177390949 1.5e-08 23_[-1]_61 chr16:50671597-50672097 1.5e-08 42_[-1]_42 chr20:58209753-58210253 1.5e-08 75_[+1]_9 chr19:38243749-38244249 1.7e-08 40_[-1]_44 chr1:203861228-203861728 2.6e-08 5_[-1]_79 chr9:129131632-129132132 3e-08 20_[-1]_64 chr6:33123665-33124165 3e-08 24_[-1]_60 chr10:133318570-13331907 3.5e-08 67_[+1]_17 chr1:6041402-6041902 4.5e-08 25_[-1]_59 chr5:133460097-133460597 4.5e-08 43_[+1]_41 chr6:127266335-127266835 5.4e-08 15_[+1]_69 chr11:62311090-62311590 5.4e-08 35_[+1]_49 chr17:40560190-40560690 5.4e-08 52_[+1]_32 chr22:42779988-42780488 6e-08 73_[-1]_11 chr19:39412573-39413073 6e-08 61_[+1]_23 chr5:135560763-135561263 6e-08 10_[-1]_74 chr11:75451391-75451891 6e-08 54_[+1]_30 chr18:47997427-47997927 7.3e-08 62_[+1]_22 chr22:50498120-50498620 7.3e-08 48_[+1]_36 chr10:84429894-84430394 7.3e-08 7_[-1]_77 chr16:14289664-14290164 8.8e-08 48_[+1]_36 chr5:1644813-1645313 8.8e-08 41_[+1]_43 chr6:18823734-18824234 8.8e-08 49_[+1]_35 chr15:63610104-63610604 8.8e-08 20_[-1]_64 chr17:18625549-18626049 8.8e-08 23_[-1]_61 chr2:128469137-128469637 8.8e-08 41_[-1]_43 chr8:42412301-42412801 1e-07 16_[-1]_68 chr3:47837645-47838145 1e-07 16_[-1]_68 chr5:138449884-138450384 1e-07 48_[-1]_36 chr16:1194519-1195019 1e-07 68_[+1]_16 chr2:177263430-177263930 1.1e-07 21_[-1]_63 chr1:155050381-155050881 1.4e-07 32_[+1]_52 chr10:95374552-95375052 1.4e-07 47_[-1]_37 chr1:201704132-201704632 1.4e-07 39_[+1]_45 chr19:40634435-40634935 1.6e-07 57_[+1]_27 chr20:64145405-64145905 1.6e-07 58_[+1]_26 chr5:139517865-139518365 1.6e-07 33_[-1]_51 chr10:122053984-12205448 1.8e-07 29_[-1]_55 chr19:5515655-5516155 1.8e-07 45_[-1]_39 chr17:38444050-38444550 2.1e-07 25_[-1]_59 chr1:156659868-156660368 2.1e-07 39_[-1]_45 chr9:122379276-122379776 2.1e-07 37_[-1]_47 chr6:44074441-44074941 2.1e-07 72_[+1]_12 chr19:5534862-5535362 2.5e-07 60_[+1]_24 chr20:33947635-33948135 2.5e-07 26_[-1]_58 chr10:96229449-96229949 2.5e-07 62_[-1]_22 chr13:112942669-11294316 2.5e-07 17_[-1]_67 chr12:82685628-82686128 2.5e-07 34_[-1]_50 chr11:10792387-10792887 2.5e-07 42_[-1]_42 chr4:40325340-40325840 2.5e-07 58_[+1]_26 chr5:127313779-127314279 2.5e-07 62_[+1]_22 chr1:84753445-84753945 2.5e-07 78_[+1]_6 chr3:159252708-159253208 2.9e-07 64_[+1]_20 chr17:74085368-74085868 3.8e-07 68_[+1]_16 chr11:76799165-76799665 3.8e-07 45_[+1]_39 chr12:132194005-13219450 4.4e-07 59_[+1]_25 chr20:38337622-38338122 4.4e-07 42_[-1]_42 chr13:44876844-44877344 4.4e-07 68_[+1]_16 chr11:69950034-69950534 4.4e-07 32_[-1]_52 chr20:23235344-23235844 4.4e-07 59_[+1]_25 chr10:101050203-10105070 4.4e-07 24_[-1]_60 chr17:76182086-76182586 4.4e-07 60_[+1]_24 chr5:112995989-112996489 4.4e-07 14_[-1]_70 chr19:29694554-29695054 4.4e-07 9_[-1]_75 chr9:36991483-36991983 5e-07 67_[+1]_17 chr1:39609528-39610028 5e-07 51_[+1]_33 chr10:100433747-10043424 5e-07 58_[-1]_26 chr6:70955875-70956375 5e-07 24_[+1]_60 chr5:141618973-141619473 5e-07 78_[+1]_6 chr5:134039384-134039884 5.7e-07 60_[+1]_24 chr7:129829921-129830421 5.7e-07 57_[+1]_27 chr9:34591606-34592106 5.7e-07 49_[+1]_35 chr17:76523028-76523528 5.7e-07 38_[-1]_46 chr17:80196010-80196510 5.7e-07 53_[-1]_31 chr5:143013956-143014456 6.6e-07 37_[-1]_47 chr19:50357026-50357526 6.6e-07 9_[-1]_75 chr12:98566769-98567269 6.6e-07 36_[-1]_48 chr1:7975207-7975707 7.5e-07 38_[-1]_46 chr17:1574359-1574859 7.5e-07 52_[-1]_32 chrX:153539435-153539935 7.5e-07 26_[-1]_58 chr1:20361744-20362244 8.4e-07 33_[-1]_51 chr8:42152457-42152957 8.4e-07 46_[+1]_38 chr10:43078819-43079319 8.4e-07 67_[+1]_17 chr5:149656520-149657020 8.4e-07 49_[-1]_35 chr8:74171321-74171821 9.6e-07 55_[+1]_29 chr20:38242799-38243299 9.6e-07 46_[+1]_38 chr2:70341141-70341641 9.6e-07 15_[-1]_69 chrX:68462578-68463078 1.1e-06 83_[+1]_1 chr17:17568641-17569141 1.1e-06 48_[+1]_36 chr5:147453784-147454284 1.2e-06 51_[-1]_33 chr16:30187223-30187723 1.2e-06 53_[-1]_31 chr15:73636393-73636893 1.2e-06 55_[+1]_29 chr16:30953564-30954064 1.2e-06 52_[-1]_32 chr19:34501449-34501949 1.2e-06 82_[+1]_2 chr14:100154950-10015545 1.4e-06 45_[+1]_39 chr20:2387148-2387648 1.4e-06 39_[-1]_45 chr6:2482726-2483226 1.4e-06 47_[+1]_37 chr2:190382820-190383320 1.4e-06 29_[-1]_55 chr5:149268885-149269385 1.4e-06 60_[+1]_24 chr9:34379253-34379753 1.4e-06 55_[+1]_29 chr12:110469039-11046953 1.4e-06 61_[-1]_23 chr1:18820690-18821190 1.6e-06 51_[+1]_33 chr16:25233632-25234132 1.8e-06 62_[-1]_22 chr6:166951279-166951779 1.8e-06 65_[+1]_19 chr10:97463572-97464072 1.8e-06 11_[-1]_73 chr6:13795038-13795538 1.8e-06 34_[-1]_50 chr10:117216577-11721707 1.8e-06 37_[-1]_47 chr16:712802-713302 1.8e-06 33_[-1]_51 chr2:126886260-126886760 2e-06 21_[+1]_63 chr19:35135336-35135836 2e-06 15_[+1]_69 chr22:19144636-19145136 2e-06 25_[-1]_59 chr15:100869469-10086996 2e-06 58_[+1]_26 chr10:72274689-72275189 2.3e-06 22_[-1]_62 chr4:7238256-7238756 2.3e-06 32_[-1]_52 chr15:66862763-66863263 2.3e-06 44_[+1]_40 chr10:77719538-77720038 2.3e-06 [-1]_84 chr1:84620619-84621119 2.3e-06 24_[+1]_60 chr16:67928405-67928905 2.6e-06 45_[+1]_39 chr10:102422614-10242311 2.6e-06 35_[+1]_49 chr1:41444206-41444706 2.6e-06 28_[-1]_56 chr19:33406728-33407228 2.6e-06 78_[+1]_6 chr8:27592139-27592639 2.6e-06 50_[+1]_34 chr9:33466528-33467028 2.6e-06 71_[+1]_13 chr17:18166850-18167350 2.8e-06 38_[-1]_46 chr7:151018058-151018558 2.8e-06 53_[+1]_31 chr12:106282308-10628280 2.8e-06 60_[+1]_24 chr19:33184198-33184698 2.8e-06 13_[+1]_71 chr22:20885442-20885942 3.2e-06 20_[-1]_64 chr22:41597190-41597690 3.2e-06 66_[+1]_18 chr21:7798482-7798982 3.2e-06 22_[-1]_62 chr17:32253015-32253515 3.2e-06 2_[-1]_82 chr1:110196856-110197356 3.2e-06 28_[-1]_56 chr17:36148868-36149368 3.6e-06 62_[+1]_22 chr14:68926132-68926632 3.6e-06 65_[+1]_19 chr10:119139415-11913991 3.6e-06 24_[-1]_60 chr14:92973180-92973680 4e-06 28_[-1]_56 chr17:40113050-40113550 4e-06 30_[-1]_54 chr5:61357695-61358195 4.5e-06 58_[+1]_26 chr12:51341295-51341795 4.5e-06 76_[+1]_8 chr22:38114427-38114927 4.5e-06 39_[-1]_45 chr17:32936835-32937335 5e-06 64_[+1]_20 chr8:28072701-28073201 5e-06 28_[-1]_56 chr7:101244130-101244630 5.6e-06 40_[+1]_44 chr17:82153796-82154296 5.6e-06 51_[+1]_33 chr22:43060151-43060651 5.6e-06 54_[+1]_30 chr9:128035085-128035585 5.6e-06 69_[+1]_15 chr6:2448724-2449224 5.6e-06 5_[+1]_79 chr16:30054951-30055451 5.6e-06 43_[+1]_41 chr3:48435858-48436358 5.6e-06 65_[+1]_19 chr6:111997053-111997553 5.6e-06 63_[+1]_21 chr22:23929977-23930477 5.6e-06 27_[-1]_57 chr7:96414862-96415362 5.6e-06 46_[-1]_38 chr7:140517857-140518357 6.2e-06 28_[-1]_56 chr16:87635412-87635912 6.2e-06 52_[+1]_32 chr12:10674060-10674560 6.9e-06 67_[+1]_17 chr6:35294286-35294786 6.9e-06 31_[-1]_53 chr1:225474924-225475424 6.9e-06 18_[-1]_66 chr9:133532960-133533460 7.6e-06 73_[+1]_11 chr19:14217327-14217827 7.6e-06 7_[-1]_77 chr14:103520955-10352145 7.6e-06 79_[-1]_5 chr5:169850349-169850849 7.6e-06 39_[-1]_45 chr17:80575280-80575780 7.6e-06 40_[+1]_44 chr5:149775743-149776243 8.4e-06 41_[+1]_43 chr9:126009012-126009512 8.4e-06 44_[+1]_40 chr22:50241057-50241557 8.4e-06 18_[-1]_66 chr10:71956060-71956560 8.4e-06 1_[-1]_83 chr1:53185615-53186115 8.4e-06 76_[+1]_8 chr12:122335982-12233648 8.4e-06 30_[-1]_54 chr14:100377743-10037824 9.3e-06 70_[+1]_14 chr19:48826677-48827177 9.3e-06 70_[+1]_14 chr4:157045454-157045954 9.3e-06 57_[+1]_27 chr2:96507950-96508450 9.3e-06 64_[+1]_20 chr1:180252583-180253083 1e-05 25_[-1]_59 chr1:226547648-226548148 1e-05 13_[-1]_71 chr11:57619268-57619768 1e-05 37_[-1]_47 chr12:3202871-3203371 1.1e-05 83_[+1]_1 chr1:168082165-168082665 1.1e-05 60_[+1]_24 chr1:53125522-53126022 1.1e-05 56_[+1]_28 chr6:112337123-112337623 1.1e-05 26_[-1]_58 chr5:142699009-142699509 1.1e-05 75_[+1]_9 chr8:42140547-42141047 1.3e-05 76_[+1]_8 chr13:93248495-93248995 1.3e-05 22_[-1]_62 chr22:29701212-29701712 1.4e-05 2_[-1]_82 chr6:151324169-151324669 1.4e-05 40_[+1]_44 chr19:43950895-43951395 1.4e-05 [+1]_84 chr22:20564263-20564763 1.4e-05 50_[-1]_34 chr1:225777399-225777899 1.5e-05 53_[-1]_31 chr19:35643379-35643879 1.5e-05 25_[+1]_59 chr15:66851142-66851642 1.5e-05 16_[+1]_68 chr20:1900259-1900759 1.5e-05 40_[-1]_44 chr5:138178831-138179331 1.5e-05 62_[+1]_22 chr1:87325947-87326447 1.5e-05 2_[-1]_82 chr17:30340041-30340541 1.5e-05 54_[-1]_30 chr1:33298559-33299059 1.7e-05 78_[+1]_6 chr3:55405430-55405930 1.7e-05 33_[+1]_51 chr1:1375028-1375528 1.9e-05 29_[+1]_55 chr5:1594384-1594884 1.9e-05 40_[-1]_44 chr16:86019365-86019865 1.9e-05 24_[-1]_60 chr5:188535-189035 1.9e-05 27_[-1]_57 chr13:27481736-27482236 2e-05 17_[-1]_67 chr10:100342272-10034277 2e-05 66_[-1]_18 chr5:6820799-6821299 2e-05 40_[-1]_44 chr19:48107254-48107754 2e-05 43_[-1]_41 chr15:89358592-89359092 2.2e-05 36_[+1]_48 chr6:27251651-27252151 2.2e-05 29_[-1]_55 chr10:79562100-79562600 2.2e-05 2_[-1]_82 chr8:101756197-101756697 2.5e-05 65_[+1]_19 chr9:129006671-129007171 2.5e-05 38_[+1]_46 chr6:125956541-125957041 2.5e-05 21_[+1]_63 chr17:74437608-74438108 2.5e-05 38_[-1]_46 chr12:12266939-12267439 2.7e-05 81_[-1]_3 chr1:234486893-234487393 3e-05 40_[-1]_44 chr19:16631392-16631892 3e-05 63_[+1]_21 chr16:4624159-4624659 3.2e-05 31_[+1]_53 chr11:2532650-2533150 3.2e-05 22_[-1]_62 chr22:37933810-37934310 3.2e-05 68_[+1]_16 chr3:14791279-14791779 3.2e-05 18_[-1]_66 chr6:90286843-90287343 3.5e-05 34_[-1]_50 chr19:37371260-37371760 3.5e-05 39_[-1]_45 chr17:44350679-44351179 4.2e-05 50_[+1]_34 chr10:101602731-10160323 5e-05 26_[-1]_58 chr6:131628058-131628558 5e-05 29_[+1]_55 chr21:45555916-45556416 5.5e-05 3_[+1]_81 chr12:123232757-12323325 5.5e-05 29_[-1]_55 chr19:11381905-11382405 6e-05 60_[-1]_24 chr10:93126406-93126906 6.5e-05 33_[-1]_51 chr12:53675998-53676498 6.5e-05 34_[+1]_50 chr5:6765618-6766118 6.5e-05 43_[-1]_41 chr8:38425587-38426087 6.5e-05 63_[+1]_21 chr6:149026425-149026925 7e-05 47_[+1]_37 chr12:106357648-10635814 7e-05 72_[-1]_12 chr1:93078897-93079397 7.6e-05 64_[-1]_20 chr1:53470084-53470584 8.3e-05 25_[-1]_59 chr7:100559691-100560191 9.7e-05 54_[+1]_30 chr1:204516293-204516793 9.7e-05 46_[-1]_38 chr6:130020964-130021464 0.00011 48_[+1]_36 chr15:72473614-72474114 0.00012 9_[+1]_75 chr5:95554962-95555462 0.00012 62_[-1]_22 chr15:64387530-64388030 0.00013 8_[+1]_76 chr12:123601781-12360228 0.00014 74_[-1]_10 chr1:45303860-45304360 0.00014 58_[+1]_26 chr3:195850817-195851317 0.00014 53_[+1]_31 chr2:27370148-27370648 0.00017 41_[+1]_43 chr1:43946282-43946782 0.00017 49_[+1]_35 chr17:58631467-58631967 0.00021 78_[+1]_6 chr17:44014673-44015173 0.00022 70_[+1]_14 chr9:133417916-133418416 0.00024 24_[+1]_60 chr3:194672259-194672759 0.00026 61_[+1]_23 chr17:41688763-41689263 0.00034 24_[+1]_60 chr7:102572220-102572720 0.00039 33_[-1]_51 chr19:37655841-37656341 0.001 62_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCGCCMCCTDGTGG width=16 seqs=265 chr19:970610-971110 ( 14) CAGCGCCACCTGGTGG 1 chr8:141346836-141347336 ( 60) CAGCGCCACCTGGTGG 1 chr8:41430035-41430535 ( 28) CAGCGCCCCCTGGTGG 1 chr16:29848412-29848912 ( 73) CAGCGCCACCTGCTGG 1 chr6:6546975-6547475 ( 55) CAGCGCCATCTGGTGG 1 chr5:95858674-95859174 ( 20) CAGCGCCACCTGCTGG 1 chr14:92714665-92715165 ( 37) CAGCGCCATCTGGTGG 1 chr12:111304504-11130500 ( 32) CAGCGACACCTGGTGG 1 chr20:48620439-48620939 ( 13) CAGCGCCATCTAGTGG 1 chr14:74905603-74906103 ( 47) AAGCGCCACCTGGTGG 1 chr5:173592012-173592512 ( 34) CAGTGCCACCTTGTGG 1 chr12:124469106-12446960 ( 69) CAGCGACCCCTGGTGG 1 chr3:13461488-13461988 ( 77) CAGCGCCCTCTTGTGG 1 chr6:131923340-131923840 ( 14) CAGCGACACCTTGTGG 1 chr5:177390449-177390949 ( 24) CAGCACCACCTGGTGG 1 chr16:50671597-50672097 ( 43) CAGCGACACCTTGTGG 1 chr20:58209753-58210253 ( 76) CAGCGCCACCTGGCGG 1 chr19:38243749-38244249 ( 41) CAGCGCCCCCTCGTGG 1 chr1:203861228-203861728 ( 6) CAGCGCCACCTGGAGG 1 chr9:129131632-129132132 ( 21) CAGCTCCCCCTGGTGG 1 chr6:33123665-33124165 ( 25) CAGCACCACCTAGTGG 1 chr10:133318570-13331907 ( 68) CAGCGCCACCTCCTGG 1 chr1:6041402-6041902 ( 26) CAGCGCCACCCGGTGG 1 chr5:133460097-133460597 ( 44) CAGCGCCACCTAGTGT 1 chr6:127266335-127266835 ( 16) CAGCACCACCTGCTGG 1 chr11:62311090-62311590 ( 36) CAGCACCACCTGCTGG 1 chr17:40560190-40560690 ( 53) CAGCACCACCTGCTGG 1 chr22:42779988-42780488 ( 74) AAGCGCCATCTAGTGG 1 chr19:39412573-39413073 ( 62) CAGCGCCCCCTCCTGG 1 chr5:135560763-135561263 ( 11) AAGCGCCATCTTGTGG 1 chr11:75451391-75451891 ( 55) CAGCTCCCCCTTGTGG 1 chr18:47997427-47997927 ( 63) CAGCGCCCCCATGTGG 1 chr22:50498120-50498620 ( 49) CAGTGCCCCCTTCTGG 1 chr10:84429894-84430394 ( 8) CAGAGCCCCCTGGTGG 1 chr16:14289664-14290164 ( 49) CAGTGACACCTTGTGG 1 chr5:1644813-1645313 ( 42) CAGCGCCACCGTGTGG 1 chr6:18823734-18824234 ( 50) CAGCGCCACCGTGTGG 1 chr15:63610104-63610604 ( 21) CAGAGCCACCTAGTGG 1 chr17:18625549-18626049 ( 24) CAGCGCCACCTGCAGG 1 chr2:128469137-128469637 ( 42) CAGTGACACCTTGTGG 1 chr8:42412301-42412801 ( 17) CAGCGGCACCTGGTGG 1 chr3:47837645-47838145 ( 17) CAGCTCCCCCTGCTGG 1 chr5:138449884-138450384 ( 49) CTGCGCCACCTAGTGG 1 chr16:1194519-1195019 ( 69) AGGCGCCACCTGGTGG 1 chr2:177263430-177263930 ( 22) CGGTGCCCCCTGGTGG 1 chr1:155050381-155050881 ( 33) CAGCGCCACCCGCTGG 1 chr10:95374552-95375052 ( 48) CAGCGCCACCTAGTGA 1 chr1:201704132-201704632 ( 40) CAACGCCCCCTTGTGG 1 chr19:40634435-40634935 ( 58) CTGCGCCCCCTAGTGG 1 chr20:64145405-64145905 ( 59) CGGCGACACCTTGTGG 1 chr5:139517865-139518365 ( 34) CAGCGCCCTCTAGCGG 1 chr10:122053984-12205448 ( 30) CAGCGCCACCACGTGG 1 chr19:5515655-5516155 ( 46) CAGCAACACCTTGTGG 1 chr17:38444050-38444550 ( 26) CAGAGCCCCCTGCTGG 1 chr1:156659868-156660368 ( 40) CGGCGCCCTCTGCTGG 1 chr9:122379276-122379776 ( 38) CAGTGCCACCATGTGG 1 chr6:44074441-44074941 ( 73) CGGCGCCCTCTGCTGG 1 chr19:5534862-5535362 ( 61) AAGCTCCACCTTGTGG 1 chr20:33947635-33948135 ( 27) CAGCGACACCATGTGG 1 chr10:96229449-96229949 ( 63) CTGCGCCCCCTGCTGG 1 chr13:112942669-11294316 ( 18) CAGCACCCTCTGCTGG 1 chr12:82685628-82686128 ( 35) CAGCGCCCCCTGCTGC 1 chr11:10792387-10792887 ( 43) CAGCGCCCTCTGCCGG 1 chr4:40325340-40325840 ( 59) CAGAGACACCTGGTGG 1 chr5:127313779-127314279 ( 63) AAGCGCCACCTCCTGG 1 chr1:84753445-84753945 ( 79) CAGCGACACCAAGTGG 1 chr3:159252708-159253208 ( 65) CAGCACCATCTACTGG 1 chr17:74085368-74085868 ( 69) CAGCGACATCAGGTGG 1 chr11:76799165-76799665 ( 46) CAGCGCCACCTCGTGC 1 chr12:132194005-13219450 ( 60) CAGCGACACCGTGTGG 1 chr20:38337622-38338122 ( 43) CAGCGACACCGTGTGG 1 chr13:44876844-44877344 ( 69) CAGCGACACCGTGTGG 1 chr11:69950034-69950534 ( 33) CAGCGACACCCTGTGG 1 chr20:23235344-23235844 ( 60) CAGCGACACCGTGTGG 1 chr10:101050203-10105070 ( 25) AAGCGCCCCCCGGTGG 1 chr17:76182086-76182586 ( 61) AAGCGCCACCTGGTGA 1 chr5:112995989-112996489 ( 15) CAGCACCACCAAGTGG 1 chr19:29694554-29695054 ( 10) AGGCGCCCTCTGGTGG 1 chr9:36991483-36991983 ( 68) TGGTGCCACCTGGTGG 1 chr1:39609528-39610028 ( 52) AAGCGCCCTCTGGCGG 1 chr10:100433747-10043424 ( 59) CAGCGCCACATTGTGG 1 chr6:70955875-70956375 ( 25) CTGCGCCACCTGGCGG 1 chr5:141618973-141619473 ( 79) CACCGCCCCCTGGCGG 1 chr5:134039384-134039884 ( 61) AAGCTCCCTCTGGTGG 1 chr7:129829921-129830421 ( 58) CATCGCCATCTGGTGG 1 chr9:34591606-34592106 ( 50) AAGCGACACCTGGCGG 1 chr17:76523028-76523528 ( 39) CAGCGTCCCCTGCTGG 1 chr17:80196010-80196510 ( 54) TTGCGCCCCCTGGTGG 1 chr5:143013956-143014456 ( 38) CAGCACCGCCTGGTGG 1 chr19:50357026-50357526 ( 10) CACCTCCACCTTGTGG 1 chr12:98566769-98567269 ( 37) CAGCGACATCTAGTGT 1 chr1:7975207-7975707 ( 39) CAGCACCACCCTGTGG 1 chr17:1574359-1574859 ( 53) CAGCACCCCCTGCCGG 1 chrX:153539435-153539935 ( 27) CACTGACACCTGGTGG 1 chr1:20361744-20362244 ( 34) CAGCGCCCTCTGCTGA 1 chr8:42152457-42152957 ( 47) CAGCGCCCCCTCCAGG 1 chr10:43078819-43079319 ( 68) AAGCGCCCTCTTGCGG 1 chr5:149656520-149657020 ( 50) CAGTGCCCTCATGTGG 1 chr8:74171321-74171821 ( 56) CAGTGACACCATGTGG 1 chr20:38242799-38243299 ( 47) CAGTGACACCATGTGG 1 chr2:70341141-70341641 ( 16) CAGTGCCCTCTAGAGG 1 chrX:68462578-68463078 ( 84) AAGTGACCTCTGGTGG 1 chr17:17568641-17569141 ( 49) CAGCGCCACCTACCGT 1 chr5:147453784-147454284 ( 52) TCGCGCCCCCTGGTGG 1 chr16:30187223-30187723 ( 54) CAGCGCCACCTGCCGC 1 chr15:73636393-73636893 ( 56) TCGCGCCCCCTGGTGG 1 chr16:30953564-30954064 ( 53) CAGCTCCCCCTGCAGG 1 chr19:34501449-34501949 ( 83) GGGCGCCACCTGGTGG 1 chr14:100154950-10015545 ( 46) CGATGCCACCTGGTGG 1 chr20:2387148-2387648 ( 40) CAGTGACCCCATGTGG 1 chr6:2482726-2483226 ( 48) CAGCGCCACCATGTGA 1 chr2:190382820-190383320 ( 30) TAGAGACACCTGGTGG 1 chr5:149268885-149269385 ( 61) CATTGCCACCTAGTGG 1 chr9:34379253-34379753 ( 56) TAGCTCCCCCTCGTGG 1 chr12:110469039-11046953 ( 62) CAGCGCCCCCTCGGGG 1 chr1:18820690-18821190 ( 52) CAGCACCATCTGCTGT 1 chr16:25233632-25234132 ( 63) CAGCGGCACCATGTGG 1 chr6:166951279-166951779 ( 66) AAGAGCCCTCTAGTGG 1 chr10:97463572-97464072 ( 12) CAGCACCACCCTCTGG 1 chr6:13795038-13795538 ( 35) CGCCGCCCTCTAGTGG 1 chr10:117216577-11721707 ( 38) ACGCGCCACCTGCTGG 1 chr16:712802-713302 ( 34) CGGCACCCCCTGGCGG 1 chr2:126886260-126886760 ( 22) CAGCGCCCCCTCGCGT 1 chr19:35135336-35135836 ( 16) CTGCTCCCTCTGGTGG 1 chr22:19144636-19145136 ( 26) CAGCACCCCCTCGTGT 1 chr15:100869469-10086996 ( 59) TGACGCCACCTGGTGG 1 chr10:72274689-72275189 ( 23) CAGCGCCCCCCGCAGG 1 chr4:7238256-7238756 ( 33) CAGCGCCACCCAGTGA 1 chr15:66862763-66863263 ( 45) AGGCGCCCTCTCGTGG 1 chr10:77719538-77720038 ( 1) TAGCGACACCGTGTGG 1 chr1:84620619-84621119 ( 25) CGGCGCCCTCTGCAGG 1 chr16:67928405-67928905 ( 46) AGGCGCCATCTGGTGT 1 chr10:102422614-10242311 ( 36) CACTGCCACCATGTGG 1 chr1:41444206-41444706 ( 29) CAGCGACCCCATGCGG 1 chr19:33406728-33407228 ( 79) CACTGCCCTCTTCTGG 1 chr8:27592139-27592639 ( 51) CGCTGCCCCCTTGTGG 1 chr9:33466528-33467028 ( 72) CACCGCCGCCTGCTGG 1 chr17:18166850-18167350 ( 39) CAGTGACACCACGTGG 1 chr7:151018058-151018558 ( 54) CTGCGCCATCTGCCGG 1 chr12:106282308-10628280 ( 61) TTGCTCCACCTGGTGG 1 chr19:33184198-33184698 ( 14) CAGCGCCATCTATCGG 1 chr22:20885442-20885942 ( 21) CAGCACCTCCTAGTGG 1 chr22:41597190-41597690 ( 67) CAGCGCCACCTGGTAT 1 chr21:7798482-7798982 ( 23) CAGCGTCCCCATGTGG 1 chr17:32253015-32253515 ( 3) CAGTGTCCTCTAGTGG 1 chr1:110196856-110197356 ( 29) AGGCTCCCCCTGCTGG 1 chr17:36148868-36149368 ( 63) TTGCGCCATCTACTGG 1 chr14:68926132-68926632 ( 66) CAGCACCAGCTAGTGG 1 chr10:119139415-11913991 ( 25) CAGCATCCCCTGCTGG 1 chr14:92973180-92973680 ( 29) CAGCGCCACAGGGTGG 1 chr17:40113050-40113550 ( 31) AAGTGCCCCCTTCAGG 1 chr5:61357695-61358195 ( 59) TAGCGCCATCTTATGG 1 chr12:51341295-51341795 ( 77) CAGCAGCATCTGCTGG 1 chr22:38114427-38114927 ( 40) AAGCGCCCTCTAGGGG 1 chr17:32936835-32937335 ( 65) TGCTGCCACCTGGTGG 1 chr8:28072701-28073201 ( 29) AACTGACACCTTGTGG 1 chr7:101244130-101244630 ( 41) AGATGCCACCTGGTGG 1 chr17:82153796-82154296 ( 52) CACTGCCCCCCAGTGG 1 chr22:43060151-43060651 ( 55) CAGCGCCCCACGGTGG 1 chr9:128035085-128035585 ( 70) TAGCACCACCTACAGG 1 chr6:2448724-2449224 ( 6) CAGCACCCTCCACTGG 1 chr16:30054951-30055451 ( 44) TAGCTCCCCCTGCAGG 1 chr3:48435858-48436358 ( 66) CAGCACCCTCCTCTGG 1 chr6:111997053-111997553 ( 64) CAGCGACCTCTAGCGT 1 chr22:23929977-23930477 ( 28) AGGAGCCCTCTGGTGG 1 chr7:96414862-96415362 ( 47) CAGCACCGTCTACTGG 1 chr7:140517857-140518357 ( 29) TGATGCCACCTGGTGG 1 chr16:87635412-87635912 ( 53) GAGTGACACCTGCTGG 1 chr12:10674060-10674560 ( 68) CAGCGCCACCTCACGG 1 chr6:35294286-35294786 ( 32) CAGTGCCACCTGTTGA 1 chr1:225474924-225475424 ( 19) GAGCGACCCCTGGCGG 1 chr9:133532960-133533460 ( 74) CAGCGACCCCAGGGGG 1 chr19:14217327-14217827 ( 8) AAGCGGCCCCTAGCGG 1 chr14:103520955-10352145 ( 80) CTGCGCCCTCTCGCGG 1 chr5:169850349-169850849 ( 40) CAATGCCACCTTTTGG 1 chr17:80575280-80575780 ( 41) TGGCGCCCCCTCGTGT 1 chr5:149775743-149776243 ( 42) TATTGCCCCCTAGTGG 1 chr9:126009012-126009512 ( 45) CAGTGGCACCGTGTGG 1 chr22:50241057-50241557 ( 19) AGGAGCCCTCTAGTGG 1 chr10:71956060-71956560 ( 2) AGGAGCCCTCTAGTGG 1 chr1:53185615-53186115 ( 77) AGGAGCCCTCTAGTGG 1 chr12:122335982-12233648 ( 31) AGGCGCCCTCTGTTGG 1 chr14:100377743-10037824 ( 71) CCGCGCCCTCTGCTGT 1 chr19:48826677-48827177 ( 71) CAGCGCCCCCGCCAGG 1 chr4:157045454-157045954 ( 58) CAGGGACACCATGTGG 1 chr2:96507950-96508450 ( 65) AGGCGGCCCCTGCTGG 1 chr1:180252583-180253083 ( 26) CATCGCCCCCTGCTGC 1 chr1:226547648-226548148 ( 14) CAGCGCCGTCTGGCGT 1 chr11:57619268-57619768 ( 38) CAATGACACCAAGTGG 1 chr12:3202871-3203371 ( 84) CCCTGCCACCTGCTGG 1 chr1:168082165-168082665 ( 61) CGCTGCCACCTAGTGT 1 chr1:53125522-53126022 ( 57) CAGGGCCACCCCGTGG 1 chr6:112337123-112337623 ( 27) CACTGCCATCTACTGT 1 chr5:142699009-142699509 ( 76) CACTGCCCTCTGCAGG 1 chr8:42140547-42141047 ( 77) CAGCACCACCTTCCGA 1 chr13:93248495-93248995 ( 23) CAGAGCCTCCTTCTGG 1 chr22:29701212-29701712 ( 3) CAGCTCCCCCTGCAGC 1 chr6:151324169-151324669 ( 41) TCGCGCCCCCTGGTGC 1 chr19:43950895-43951395 ( 1) CACTTCCCCCTGGAGG 1 chr22:20564263-20564763 ( 51) TAGCGCCGCCTGCTGC 1 chr1:225777399-225777899 ( 54) CAGCGCCCCCGGTAGG 1 chr19:35643379-35643879 ( 26) CTGTACCACCTCCTGG 1 chr15:66851142-66851642 ( 17) AGGCTCCCTCTGGCGG 1 chr20:1900259-1900759 ( 41) TAGAGACACCTAGAGG 1 chr5:138178831-138179331 ( 63) AAGCTGCACCTCGTGG 1 chr1:87325947-87326447 ( 3) CAGCGCCACCTCTGGG 1 chr17:30340041-30340541 ( 55) AAGGGACCTCTAGTGG 1 chr1:33298559-33299059 ( 79) AAGAGCCCTCCAGTGG 1 chr3:55405430-55405930 ( 34) CAACGGCACCATGTGG 1 chr1:1375028-1375528 ( 30) CAGCGCCCGCTGGCGT 1 chr5:1594384-1594884 ( 41) CAGCGCCACCGTCCGC 1 chr16:86019365-86019865 ( 25) CAGCGACACAGTGTGG 1 chr5:188535-189035 ( 28) CGAGGCCACCTTGTGG 1 chr13:27481736-27482236 ( 18) CACTGACACCACGTGG 1 chr10:100342272-10034277 ( 67) CACCTCCCTCTGTTGG 1 chr5:6820799-6821299 ( 41) TGGCGACCTCTAGAGG 1 chr19:48107254-48107754 ( 44) AGGGGCCCTCTAGTGG 1 chr15:89358592-89359092 ( 37) CAGCACCGCCGACTGG 1 chr6:27251651-27252151 ( 30) CAGCGCCCCCAACAGC 1 chr10:79562100-79562600 ( 3) TGGTTCCCCCTGGCGG 1 chr8:101756197-101756697 ( 66) CAGCGCCACTGTGTGG 1 chr9:129006671-129007171 ( 39) AGACGCCCCCTAGAGG 1 chr6:125956541-125957041 ( 22) GCGCGCCCTCTAGTGG 1 chr17:74437608-74438108 ( 39) CAGTGACCACTAGTGG 1 chr12:12266939-12267439 ( 82) ATGCGCCACCGGGAGG 1 chr1:234486893-234487393 ( 41) CAGCACCATCTAATGT 1 chr19:16631392-16631892 ( 64) CAGCGACACCTTGTAA 1 chr16:4624159-4624659 ( 32) CTACGCCCTCTGCCGG 1 chr11:2532650-2533150 ( 23) AAGCGCCCCCAACCGT 1 chr22:37933810-37934310 ( 69) CAGCGGCGCCCTGTGG 1 chr3:14791279-14791779 ( 19) AGACGCCCCCCAGTGG 1 chr6:90286843-90287343 ( 35) TGGCTCCATCTAGTGC 1 chr19:37371260-37371760 ( 40) CAGCTACACCTGCAGA 1 chr17:44350679-44351179 ( 51) TGCTACCCCCTAGTGG 1 chr10:101602731-10160323 ( 27) CAGCGCCACCTATGGC 1 chr6:131628058-131628558 ( 30) CGGCGCCACCAGAAGG 1 chr21:45555916-45556416 ( 4) CAGGGTCCCCTCCTGG 1 chr12:123232757-12323325 ( 30) TAGCGGCCCCTTGAGT 1 chr19:11381905-11382405 ( 61) CACTGCCCCCCACAGG 1 chr10:93126406-93126906 ( 34) TGCTGCCCCCTGGTGA 1 chr12:53675998-53676498 ( 35) TTGCTCCACCTGGCGT 1 chr5:6765618-6766118 ( 44) CAGCGCCCCCTTCTTC 1 chr8:38425587-38426087 ( 64) CAACGCCTCCTTCAGG 1 chr6:149026425-149026925 ( 48) TAGCGCCACCTAGCAT 1 chr12:106357648-10635814 ( 73) CGGCGCCGCCAGCTGC 1 chr1:93078897-93079397 ( 65) CTGCGTCCCCGACTGG 1 chr1:53470084-53470584 ( 26) TCGCGCCCTCTCCCGG 1 chr7:100559691-100560191 ( 55) TTCTGCCCCCTAGTGT 1 chr1:204516293-204516793 ( 47) CAGCTCCCGCTCCCGG 1 chr6:130020964-130021464 ( 49) GGGAGACCTCTAGTGG 1 chr15:72473614-72474114 ( 10) CAGCTACCTAAAGTGG 1 chr5:95554962-95555462 ( 63) CGCCTCCCTCTGGCGT 1 chr15:64387530-64388030 ( 9) CGGTGCGACCTTGCGG 1 chr12:123601781-12360228 ( 75) CAGCTCCAGCGGCCGG 1 chr1:45303860-45304360 ( 59) GCGCGCCCTCCAGTGG 1 chr3:195850817-195851317 ( 54) TGATGTCCCCTAGTGG 1 chr2:27370148-27370648 ( 42) CAGCGCCACCTGGGCT 1 chr1:43946282-43946782 ( 50) CAGCGCCCCGCGCCGG 1 chr17:58631467-58631967 ( 79) TATCTCCCTCTCGCGG 1 chr17:44014673-44015173 ( 71) CGACGCCATCTTGGGA 1 chr9:133417916-133418416 ( 25) CAGCGGCATCCGGGGT 1 chr3:194672259-194672759 ( 62) TAGCTCCGCCTTCCGC 1 chr17:41688763-41689263 ( 25) CGCCGCCGCCTTCCGC 1 chr7:102572220-102572720 ( 34) AAGTGACGCCGGCTGC 1 chr19:37655841-37656341 ( 63) CCGCGCCCCCGCGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 7.62079 E= 2.5e-412 -57 134 -361 -84 170 -287 -67 -189 -198 -161 159 -357 -208 142 -361 -27 -103 -1469 151 -113 -36 146 -274 -308 -1469 185 -619 -1469 116 70 -274 -430 -589 137 -419 24 -357 182 -619 -589 -113 -187 -187 174 7 -144 62 9 -389 7 126 -289 -124 -87 -319 170 -389 -619 182 -589 -243 -211 154 -130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 265 E= 2.5e-412 0.150943 0.701887 0.022642 0.124528 0.728302 0.037736 0.173585 0.060377 0.056604 0.090566 0.833962 0.018868 0.052830 0.739623 0.022642 0.184906 0.109434 0.000000 0.788679 0.101887 0.173585 0.758491 0.041509 0.026415 0.000000 0.996226 0.003774 0.000000 0.498113 0.449057 0.041509 0.011321 0.003774 0.716981 0.015094 0.264151 0.018868 0.973585 0.003774 0.003774 0.101887 0.075472 0.075472 0.747170 0.233962 0.101887 0.426415 0.237736 0.015094 0.290566 0.664151 0.030189 0.094340 0.150943 0.030189 0.724528 0.015094 0.003774 0.977358 0.003774 0.041509 0.064151 0.803774 0.090566 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGCCMCCTDGTGG MEME-1 regular expression -------------------------------------------------------------------------------- CAGCGCC[AC][CT]CT[GTA][GC]TGG -------------------------------------------------------------------------------- Time 355.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTGTGTGTGTGTGTG MEME-2 width = 22 sites = 44 llr = 845 E-value = 3.0e-149 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::::1:1:::::11::1 pos.-specific C 1:1:211:112:::::1::11: probability G :a:9:9:a:8181819:819:8 matrix T 8:918:9:9:728191918:8: bits 2.2 1.9 1.7 * * 1.5 *** *** * * * Relative 1.3 ********* * *** * Entropy 1.1 ********* ***** ** (27.7 bits) 0.9 ********* *********** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGTGTGTGTGTGTGTGTGTGTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:37141754-37142254 + 10 5.04e-14 CTGAGTGAg tgtgtgtgtgtgtgtgtgtgtg tgtACTTAGA chr1:201435687-201436187 + 31 5.04e-14 CGCGTGCCtg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr10:96229449-96229949 + 8 5.04e-14 GTGGCtg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtt chr19:35947343-35947843 + 56 5.04e-14 GCACTGTTCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr12:57111956-57112456 - 68 5.04e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TGGTGTTGTG chr10:101442068-10144256 + 29 5.04e-14 tctgtgtgta tgtgtgtgtgtgtgtgtgtgtg tAAATGAGAT chr15:68875663-68876163 + 21 5.04e-14 AGCAGGATCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtAAA chr9:133532960-133533460 + 6 5.04e-14 gcctg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtg chr1:179814845-179815345 - 71 5.04e-14 TGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TCTGTGCGCG chr12:6778717-6779217 - 2 5.04e-14 GCGCCGCGCG TGTGTGTGTGTGTGTGTGTGTG T chr7:128360869-128361369 - 37 5.04e-14 TGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTG TGAGAGAGAG chr1:208021757-208022257 + 72 5.04e-14 CGGTATCTCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgt chr20:52972195-52972695 + 31 1.54e-13 tgcgagggtg tgtgtgtgtgtttgtgtgtgtg tgcatatgtg chr1:150235793-150236293 - 60 5.83e-13 GAACTGCGGG TGTGTGTGTGTATGTGTGTGTG TATGTGTGTG chr14:103104979-10310547 + 6 7.93e-12 AGGAG TGTGTGTGTGTGTTTGTGTCTG TGTGTTGGTG chr16:75233851-75234351 - 47 1.66e-11 TGTGTTCACG TGTGCTTGTGTGTGTGTGTGTG TCCACGTGTG chr9:135967589-135968089 + 2 2.66e-11 g tgtgtgtgtgtgtgtgtgCGCG CGCGCGCGCG chr3:194326393-194326893 - 27 1.36e-10 TGTGTTGTGT TGTGTGTGTGGTTGTGTGTGTT GTGTGTGGTG chr8:37513938-37514438 - 79 2.07e-10 . CGTGTGTGTCTGTGTGTGTGTC CATGTGAGTG chr7:66920751-66921251 - 57 4.98e-10 GGTCTGGTGT TGTGCGTGTGCGTGTGTGCGTA GTGCGTGTAT chr19:36604746-36605246 - 25 7.98e-10 GGAGGGAGAC TGTGTGATTGTGTTTGTGTGTG CCGTTCTGTG chr10:5548725-5549225 - 27 1.53e-09 AGGAGGCGTG TGTGTGTGCACGAGTGTGTGTG TGCATGCATG chr5:80959765-80960265 + 16 2.00e-09 gcgcgcattg tgtttgtgtgcatttgtgagtg tatttttgtg chr9:136631247-136631747 - 17 2.00e-09 TGAGCATGGG TGCGTGTGTGCGTGTGTGAGCA TGCGTGTGTG chr19:37371260-37371760 + 16 3.11e-09 AAACTGTGAA TATGTGTGTTTGTGTGTGACTG TCTCTGCAGG chr1:54047548-54048048 - 47 4.02e-09 CAGTTATTTT TGTGTGTGTGTTTGTTTTGGTA CAGATGGGGT chr18:58781559-58782059 + 28 8.49e-09 gtgtgtggca tgtgcctgtgtgtgtgtatgcc ttggtggtgg chr10:101830536-10183103 - 29 1.08e-08 CCCAGGCCCG CGCGCGTGTGTGTGTGTATGGG GAGGCGTGCC chr8:28401272-28401772 + 16 1.37e-08 atgtgtgtga cgcgtgtgtacgtgtgtatgcg cacgtgtgag chr7:150359954-150360454 - 19 1.49e-08 TGTAGTGGGT TGTGTGTGTGGTGGGTTGTGTG TGTGTGGAGT chr2:172098495-172098995 + 66 1.49e-08 ACGGTGTTCG AGTGTGTGTCATTGTGTGTGCG CCTGAGAATA chr1:229224144-229224644 + 49 1.49e-08 tgcatatgcg tgtttgtgtatatttgtgtgca tgcttgtatt chr6:138088266-138088766 - 13 1.74e-08 AACTCAGAAG TGTGTGAGCATGCGTGTGTGTA TTTAGAGATA chr19:36850923-36851423 + 15 3.71e-08 ACTTTTTGTT TATGTTTGTGCGGGTGTGAGTA GAGTTTAATT chr19:47241493-47241993 + 79 5.35e-08 ggcagtgAGA TGTGTGTGCCCATGTGATTGTG chr1:228782555-228783055 + 78 5.75e-08 gtgtatgtgt tgtgtgcatgtgggtgcatgtg t chr19:36489043-36489543 - 19 6.63e-08 CCTCGGAGAC TGTGGCTGCTGGTGTGTGTGTG AGAGGGAGCA chr5:141877102-141877602 + 43 8.79e-08 CTGAGATACT GGGTTGTGTGTTTGTGTGGGTG CAGTAGAGGG chr1:227953745-227954245 - 19 9.43e-08 GGAGCTGTTC TGTGTCTGTCTGTCTGTCTCTG TCTCTGTCTG chr22:49975477-49975977 + 2 2.42e-07 g tgtgtgtgtcatgtgttgtgtg gtgtgtgctg chr19:40090484-40090984 - 45 4.02e-07 GATCCCCAGG CGTGTGTGTGCGCGGGTATCAG AGGAGGGGGA chr19:37595026-37595526 + 5 4.85e-07 ggtc tgtgcgcgcgcgtgtccgagtg tcctctgtgg chr15:70097496-70097996 - 79 5.83e-07 . CGCGCGTGTGTGTGTGTTGGGT GTGTGTGTTT chr15:68559575-68560075 - 59 3.38e-06 TTGTGCTCTC CGTGCGCGCGCGTTTGCGGGAG ACCTGCTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:37141754-37142254 5e-14 9_[+2]_69 chr1:201435687-201436187 5e-14 30_[+2]_48 chr10:96229449-96229949 5e-14 7_[+2]_71 chr19:35947343-35947843 5e-14 55_[+2]_23 chr12:57111956-57112456 5e-14 67_[-2]_11 chr10:101442068-10144256 5e-14 28_[+2]_50 chr15:68875663-68876163 5e-14 20_[+2]_58 chr9:133532960-133533460 5e-14 5_[+2]_73 chr1:179814845-179815345 5e-14 70_[-2]_8 chr12:6778717-6779217 5e-14 1_[-2]_77 chr7:128360869-128361369 5e-14 36_[-2]_42 chr1:208021757-208022257 5e-14 71_[+2]_7 chr20:52972195-52972695 1.5e-13 30_[+2]_48 chr1:150235793-150236293 5.8e-13 59_[-2]_19 chr14:103104979-10310547 7.9e-12 5_[+2]_73 chr16:75233851-75234351 1.7e-11 46_[-2]_32 chr9:135967589-135968089 2.7e-11 1_[+2]_77 chr3:194326393-194326893 1.4e-10 26_[-2]_52 chr8:37513938-37514438 2.1e-10 78_[-2] chr7:66920751-66921251 5e-10 56_[-2]_22 chr19:36604746-36605246 8e-10 24_[-2]_54 chr10:5548725-5549225 1.5e-09 26_[-2]_52 chr5:80959765-80960265 2e-09 15_[+2]_63 chr9:136631247-136631747 2e-09 16_[-2]_62 chr19:37371260-37371760 3.1e-09 15_[+2]_63 chr1:54047548-54048048 4e-09 46_[-2]_32 chr18:58781559-58782059 8.5e-09 27_[+2]_51 chr10:101830536-10183103 1.1e-08 28_[-2]_50 chr8:28401272-28401772 1.4e-08 15_[+2]_63 chr7:150359954-150360454 1.5e-08 18_[-2]_60 chr2:172098495-172098995 1.5e-08 65_[+2]_13 chr1:229224144-229224644 1.5e-08 48_[+2]_30 chr6:138088266-138088766 1.7e-08 12_[-2]_66 chr19:36850923-36851423 3.7e-08 14_[+2]_64 chr19:47241493-47241993 5.3e-08 78_[+2] chr1:228782555-228783055 5.7e-08 77_[+2]_1 chr19:36489043-36489543 6.6e-08 18_[-2]_60 chr5:141877102-141877602 8.8e-08 42_[+2]_36 chr1:227953745-227954245 9.4e-08 18_[-2]_60 chr22:49975477-49975977 2.4e-07 1_[+2]_77 chr19:40090484-40090984 4e-07 44_[-2]_34 chr19:37595026-37595526 4.9e-07 4_[+2]_74 chr15:70097496-70097996 5.8e-07 78_[-2] chr15:68559575-68560075 3.4e-06 58_[-2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTGTGTGTGTGTGTG width=22 seqs=44 chr6:37141754-37142254 ( 10) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:201435687-201436187 ( 31) TGTGTGTGTGTGTGTGTGTGTG 1 chr10:96229449-96229949 ( 8) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:35947343-35947843 ( 56) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111956-57112456 ( 68) TGTGTGTGTGTGTGTGTGTGTG 1 chr10:101442068-10144256 ( 29) TGTGTGTGTGTGTGTGTGTGTG 1 chr15:68875663-68876163 ( 21) TGTGTGTGTGTGTGTGTGTGTG 1 chr9:133532960-133533460 ( 6) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:179814845-179815345 ( 71) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:6778717-6779217 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr7:128360869-128361369 ( 37) TGTGTGTGTGTGTGTGTGTGTG 1 chr1:208021757-208022257 ( 72) TGTGTGTGTGTGTGTGTGTGTG 1 chr20:52972195-52972695 ( 31) TGTGTGTGTGTTTGTGTGTGTG 1 chr1:150235793-150236293 ( 60) TGTGTGTGTGTATGTGTGTGTG 1 chr14:103104979-10310547 ( 6) TGTGTGTGTGTGTTTGTGTCTG 1 chr16:75233851-75234351 ( 47) TGTGCTTGTGTGTGTGTGTGTG 1 chr9:135967589-135968089 ( 2) TGTGTGTGTGTGTGTGTGCGCG 1 chr3:194326393-194326893 ( 27) TGTGTGTGTGGTTGTGTGTGTT 1 chr8:37513938-37514438 ( 79) CGTGTGTGTCTGTGTGTGTGTC 1 chr7:66920751-66921251 ( 57) TGTGCGTGTGCGTGTGTGCGTA 1 chr19:36604746-36605246 ( 25) TGTGTGATTGTGTTTGTGTGTG 1 chr10:5548725-5549225 ( 27) TGTGTGTGCACGAGTGTGTGTG 1 chr5:80959765-80960265 ( 16) TGTTTGTGTGCATTTGTGAGTG 1 chr9:136631247-136631747 ( 17) TGCGTGTGTGCGTGTGTGAGCA 1 chr19:37371260-37371760 ( 16) TATGTGTGTTTGTGTGTGACTG 1 chr1:54047548-54048048 ( 47) TGTGTGTGTGTTTGTTTTGGTA 1 chr18:58781559-58782059 ( 28) TGTGCCTGTGTGTGTGTATGCC 1 chr10:101830536-10183103 ( 29) CGCGCGTGTGTGTGTGTATGGG 1 chr8:28401272-28401772 ( 16) CGCGTGTGTACGTGTGTATGCG 1 chr7:150359954-150360454 ( 19) TGTGTGTGTGGTGGGTTGTGTG 1 chr2:172098495-172098995 ( 66) AGTGTGTGTCATTGTGTGTGCG 1 chr1:229224144-229224644 ( 49) TGTTTGTGTATATTTGTGTGCA 1 chr6:138088266-138088766 ( 13) TGTGTGAGCATGCGTGTGTGTA 1 chr19:36850923-36851423 ( 15) TATGTTTGTGCGGGTGTGAGTA 1 chr19:47241493-47241993 ( 79) TGTGTGTGCCCATGTGATTGTG 1 chr1:228782555-228783055 ( 78) TGTGTGCATGTGGGTGCATGTG 1 chr19:36489043-36489543 ( 19) TGTGGCTGCTGGTGTGTGTGTG 1 chr5:141877102-141877602 ( 43) GGGTTGTGTGTTTGTGTGGGTG 1 chr1:227953745-227954245 ( 19) TGTGTCTGTCTGTCTGTCTCTG 1 chr22:49975477-49975977 ( 2) TGTGTGTGTCATGTGTTGTGTG 1 chr19:40090484-40090984 ( 45) CGTGTGTGTGCGCGGGTATCAG 1 chr19:37595026-37595526 ( 5) TGTGCGCGCGCGTGTCCGAGTG 1 chr15:70097496-70097996 ( 79) CGCGCGTGTGTGTGTGTTGGGT 1 chr15:68559575-68560075 ( 59) CGTGCGCGCGCGTTTGCGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.4272 E= 3.0e-149 -329 -102 -360 187 -230 -1210 179 -1210 -1210 -160 -360 199 -1210 -1210 175 -171 -1210 -80 -360 187 -1210 -202 168 -230 -230 -202 -1210 199 -329 -1210 179 -329 -1210 -102 -1210 195 -130 -128 144 -230 -230 -28 -202 156 -130 -1210 144 -49 -329 -260 -160 191 -1210 -360 160 -71 -1210 -1210 -202 206 -1210 -360 172 -171 -329 -202 -1210 202 -98 -360 152 -171 -98 -260 -160 175 -1210 -160 172 -1210 -230 -102 -260 179 -71 -260 148 -230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 44 E= 3.0e-149 0.022727 0.136364 0.022727 0.818182 0.045455 0.000000 0.954545 0.000000 0.000000 0.090909 0.022727 0.886364 0.000000 0.000000 0.931818 0.068182 0.000000 0.159091 0.022727 0.818182 0.000000 0.068182 0.886364 0.045455 0.045455 0.068182 0.000000 0.886364 0.022727 0.000000 0.954545 0.022727 0.000000 0.136364 0.000000 0.863636 0.090909 0.113636 0.750000 0.045455 0.045455 0.227273 0.068182 0.659091 0.090909 0.000000 0.750000 0.159091 0.022727 0.045455 0.090909 0.840909 0.000000 0.022727 0.840909 0.136364 0.000000 0.000000 0.068182 0.931818 0.000000 0.022727 0.909091 0.068182 0.022727 0.068182 0.000000 0.909091 0.113636 0.022727 0.795455 0.068182 0.113636 0.045455 0.090909 0.750000 0.000000 0.090909 0.909091 0.000000 0.045455 0.136364 0.045455 0.772727 0.136364 0.045455 0.772727 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTGTGTGTGTGTG MEME-2 regular expression -------------------------------------------------------------------------------- TGTGTGTGTG[TC]GTGTGTGTGTG -------------------------------------------------------------------------------- Time 658.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCAYCWAWAHAAAC MEME-3 width = 16 sites = 43 llr = 571 E-value = 2.5e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::8::3867379a: pos.-specific C a::726a:::1321:7 probability G ::a:::::2:2::::: matrix T :9:3:4:7:3:411:2 bits 2.2 1.9 * 1.7 * * * 1.5 *** * * ** Relative 1.3 *** * * * ** Entropy 1.1 *** ***** ** (19.2 bits) 0.9 ********* **** 0.6 *********** **** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CTGCACCTAAATAAAC consensus T T AGTGAC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr7:81030421-81030921 + 52 3.95e-10 TCATTTTCCT CTGCATCTAAATAAAC AACTACAGTA chr8:69654174-69654674 - 32 5.36e-10 TTCATTAGTT CTGCACCTATATAAAC TTACTCTATT chr6:144729424-144729924 - 33 1.33e-09 ACTTTCACCC CTGCACCTATAAAAAC AACCAAACTC chr12:31271769-31272269 + 30 3.05e-09 AGGTAAGCTT CTGCATCTATAAAAAC TGTGTTAAAC chr19:14088534-14089034 + 49 7.57e-09 GCGCCCGGGA CTGCATCAAAACAAAC AGACACCAGT chr3:187186700-187187200 - 45 1.18e-08 CCGGCCAAGT CTGCACCAGAATAAAC TCATGAGTCA chr3:150242131-150242631 + 36 1.56e-08 AAGGAAGAAG CTGCATCTGTATAAAC ATCATCCAGC chr12:406864-407364 + 69 2.33e-08 aagcaagacc ctgtatctaaaacaac aaaaGCAAAA chr18:50819775-50820275 + 55 5.04e-08 GACCTTTCCT CTGCACCAAACAAAAC CTCCCTGCCA chr19:36114140-36114640 - 19 6.29e-08 CCGACAACAG CTGCATCTATGTCAAC AAGATCACGC chr18:41954696-41955196 - 57 6.29e-08 TGAGCTTGAG CTGTACCTAAAACAAT ACGAAAGAAA chr15:94478726-94479226 - 30 7.98e-08 ATTCTGCATA CTGCACCTGTGAAAAC AAATAGCCGT chr1:151809140-151809640 + 45 8.90e-08 cagagcaagt ctgcctcaaaacaaac aaacagaaca chr12:112220521-11222102 + 69 1.25e-07 gagtgagact ctgtctctaaataaat aaacaagaga chr12:31323439-31323939 + 22 1.68e-07 CCAACTCCCC CTACACCAAAACAAAC CTTGCCCTTC chr10:129707358-12970785 - 30 1.68e-07 GATGGCACGG CTGCACCTAAATCATC AAGCACTCAC chr13:97141560-97142060 - 66 2.07e-07 TGCCTTCCAT CTGCCTCTGAACAAAC AAACAGCTAC chr1:167270154-167270654 - 23 2.07e-07 TTGCAGACTG CTGTACCCAAAAAAAC AAAACAAGGA chr17:79776432-79776932 + 26 2.30e-07 TTTACTGCCT CTGCCCCTGAGTAAAC AAACACCTTC chr7:116698898-116699398 - 31 2.53e-07 CATTGCTCCT CTGCACCAAGGTAAAC AGGAGCACGA chr11:44179109-44179609 - 33 2.80e-07 GAAGGCAGGA CTGCATCTAAGGAAAC AATGTGTGTA chr5:119328732-119329232 - 59 2.80e-07 TTCACACTTG CAGCACCAATGAAAAC ACTAAATCAG chr12:45615201-45615701 - 54 2.80e-07 ATTCAATTTC AAGCACCTAAATAAAC AAGCAGTGTT chr12:30599467-30599967 + 20 3.07e-07 TCACACTGAA CTGTATCAAAGCAAAT AGAGAACAGT chrX:14095683-14096183 + 55 3.07e-07 TGTTTAGCAA CTGTACCTATCACAAC ATTAGGCTTG chr6:124479820-124480320 - 27 4.07e-07 AAAACCTGAA CTGCATCTAAAATAAG ATTGTATTTT chr1:91819307-91819807 + 53 4.48e-07 CAGGCATCAG CAGCACCTAAACATAC AGCCTTTCCT chr6:16850908-16851408 + 13 4.48e-07 AAATGCAATG CTGTACTTAAATAAAT AACACTGCTT chr12:7995082-7995582 + 43 4.89e-07 CTCACCTCAG CTGCACCTATGCTAAT TCTCACTTCC chr15:67720625-67721125 - 71 5.83e-07 CCTGGGCAAA CTGTACCTAAACTTAC ACTTTATTGC chr10:79562100-79562600 - 62 8.25e-07 TGCTGGTAAA CTGTACCTGTCTCAAC ATCAAACTCG chr19:35901748-35902248 - 7 9.71e-07 AGACAGGATT CTGCCCCTATCACAAC ACACAC chr2:190382820-190383320 - 50 9.71e-07 AATGTTGCAT CTGCACCTGCACAAAT CTGCTAGAGA chr21:45645713-45646213 - 31 1.14e-06 GACATCAGAG CTGCCCCAAAATCTAC AGCATTTATT chr15:71532904-71533404 + 71 1.14e-06 GTAATCTGAG CAGGATCAAAATAAAC TTCGTTACTC chr9:14326238-14326738 + 43 1.57e-06 TAACTACATG CTGCACCTGTGCACAC ATAGATCTGA chr6:124487902-124488402 + 5 1.57e-06 CAGC ATGCATCAAAATTAAT TCTGTCAGGA chr6:43321868-43322368 + 20 1.97e-06 gcatgagcca ctacacctggataaac aatacgttcc chr1:24043484-24043984 - 26 2.12e-06 GAGCAAGACC CTGTCTCAAAAAAAAA TAAACAAGAA chr12:7859947-7860447 - 28 2.64e-06 CTCACCTCAG CTGTACCTGTGCTAAT TCTCACTTCC chr20:53609865-53610365 - 27 3.49e-06 TACAAAAGGA CTGTACCAATTTACAC TTCCACTTAC chr3:47837645-47838145 - 81 4.01e-06 TGAG CTGTACCAACATCCAC CAGCCACTGT chr16:11916112-11916612 + 84 1.60e-05 GGAAAACGGA CAGCATCTATAACATG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:81030421-81030921 4e-10 51_[+3]_33 chr8:69654174-69654674 5.4e-10 31_[-3]_53 chr6:144729424-144729924 1.3e-09 32_[-3]_52 chr12:31271769-31272269 3.1e-09 29_[+3]_55 chr19:14088534-14089034 7.6e-09 48_[+3]_36 chr3:187186700-187187200 1.2e-08 44_[-3]_40 chr3:150242131-150242631 1.6e-08 35_[+3]_49 chr12:406864-407364 2.3e-08 68_[+3]_16 chr18:50819775-50820275 5e-08 54_[+3]_30 chr19:36114140-36114640 6.3e-08 18_[-3]_66 chr18:41954696-41955196 6.3e-08 56_[-3]_28 chr15:94478726-94479226 8e-08 29_[-3]_55 chr1:151809140-151809640 8.9e-08 44_[+3]_40 chr12:112220521-11222102 1.3e-07 68_[+3]_16 chr12:31323439-31323939 1.7e-07 21_[+3]_63 chr10:129707358-12970785 1.7e-07 29_[-3]_55 chr13:97141560-97142060 2.1e-07 65_[-3]_19 chr1:167270154-167270654 2.1e-07 22_[-3]_62 chr17:79776432-79776932 2.3e-07 25_[+3]_59 chr7:116698898-116699398 2.5e-07 30_[-3]_54 chr11:44179109-44179609 2.8e-07 32_[-3]_52 chr5:119328732-119329232 2.8e-07 58_[-3]_26 chr12:45615201-45615701 2.8e-07 53_[-3]_31 chr12:30599467-30599967 3.1e-07 19_[+3]_65 chrX:14095683-14096183 3.1e-07 54_[+3]_30 chr6:124479820-124480320 4.1e-07 26_[-3]_58 chr1:91819307-91819807 4.5e-07 52_[+3]_32 chr6:16850908-16851408 4.5e-07 12_[+3]_72 chr12:7995082-7995582 4.9e-07 42_[+3]_42 chr15:67720625-67721125 5.8e-07 70_[-3]_14 chr10:79562100-79562600 8.3e-07 61_[-3]_23 chr19:35901748-35902248 9.7e-07 6_[-3]_78 chr2:190382820-190383320 9.7e-07 49_[-3]_35 chr21:45645713-45646213 1.1e-06 30_[-3]_54 chr15:71532904-71533404 1.1e-06 70_[+3]_14 chr9:14326238-14326738 1.6e-06 42_[+3]_42 chr6:124487902-124488402 1.6e-06 4_[+3]_80 chr6:43321868-43322368 2e-06 19_[+3]_65 chr1:24043484-24043984 2.1e-06 25_[-3]_59 chr12:7859947-7860447 2.6e-06 27_[-3]_57 chr20:53609865-53610365 3.5e-06 26_[-3]_58 chr3:47837645-47838145 4e-06 80_[-3]_4 chr16:11916112-11916612 1.6e-05 83_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCAYCWAWAHAAAC width=16 seqs=43 chr7:81030421-81030921 ( 52) CTGCATCTAAATAAAC 1 chr8:69654174-69654674 ( 32) CTGCACCTATATAAAC 1 chr6:144729424-144729924 ( 33) CTGCACCTATAAAAAC 1 chr12:31271769-31272269 ( 30) CTGCATCTATAAAAAC 1 chr19:14088534-14089034 ( 49) CTGCATCAAAACAAAC 1 chr3:187186700-187187200 ( 45) CTGCACCAGAATAAAC 1 chr3:150242131-150242631 ( 36) CTGCATCTGTATAAAC 1 chr12:406864-407364 ( 69) CTGTATCTAAAACAAC 1 chr18:50819775-50820275 ( 55) CTGCACCAAACAAAAC 1 chr19:36114140-36114640 ( 19) CTGCATCTATGTCAAC 1 chr18:41954696-41955196 ( 57) CTGTACCTAAAACAAT 1 chr15:94478726-94479226 ( 30) CTGCACCTGTGAAAAC 1 chr1:151809140-151809640 ( 45) CTGCCTCAAAACAAAC 1 chr12:112220521-11222102 ( 69) CTGTCTCTAAATAAAT 1 chr12:31323439-31323939 ( 22) CTACACCAAAACAAAC 1 chr10:129707358-12970785 ( 30) CTGCACCTAAATCATC 1 chr13:97141560-97142060 ( 66) CTGCCTCTGAACAAAC 1 chr1:167270154-167270654 ( 23) CTGTACCCAAAAAAAC 1 chr17:79776432-79776932 ( 26) CTGCCCCTGAGTAAAC 1 chr7:116698898-116699398 ( 31) CTGCACCAAGGTAAAC 1 chr11:44179109-44179609 ( 33) CTGCATCTAAGGAAAC 1 chr5:119328732-119329232 ( 59) CAGCACCAATGAAAAC 1 chr12:45615201-45615701 ( 54) AAGCACCTAAATAAAC 1 chr12:30599467-30599967 ( 20) CTGTATCAAAGCAAAT 1 chrX:14095683-14096183 ( 55) CTGTACCTATCACAAC 1 chr6:124479820-124480320 ( 27) CTGCATCTAAAATAAG 1 chr1:91819307-91819807 ( 53) CAGCACCTAAACATAC 1 chr6:16850908-16851408 ( 13) CTGTACTTAAATAAAT 1 chr12:7995082-7995582 ( 43) CTGCACCTATGCTAAT 1 chr15:67720625-67721125 ( 71) CTGTACCTAAACTTAC 1 chr10:79562100-79562600 ( 62) CTGTACCTGTCTCAAC 1 chr19:35901748-35902248 ( 7) CTGCCCCTATCACAAC 1 chr2:190382820-190383320 ( 50) CTGCACCTGCACAAAT 1 chr21:45645713-45646213 ( 31) CTGCCCCAAAATCTAC 1 chr15:71532904-71533404 ( 71) CAGGATCAAAATAAAC 1 chr9:14326238-14326738 ( 43) CTGCACCTGTGCACAC 1 chr6:124487902-124488402 ( 5) ATGCATCAAAATTAAT 1 chr6:43321868-43322368 ( 20) CTACACCTGGATAAAC 1 chr1:24043484-24043984 ( 26) CTGTCTCAAAAAAAAA 1 chr12:7859947-7860447 ( 28) CTGTACCTGTGCTAAT 1 chr20:53609865-53610365 ( 27) CTGTACCAATTTACAC 1 chr3:47837645-47838145 ( 81) CTGTACCAACATCCAC 1 chr16:11916112-11916612 ( 84) CAGCATCTATAACATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.5413 E= 2.5e-048 -226 179 -1207 -1207 -94 -1207 -1207 198 -226 -1207 179 -1207 -1207 129 -357 44 191 -76 -1207 -1207 -1207 118 -1207 74 -1207 182 -1207 -326 54 -357 -1207 154 178 -1207 -25 -1207 132 -257 -257 64 154 -157 -25 -326 44 -11 -357 91 154 -25 -1207 -94 194 -199 -1207 -168 209 -1207 -1207 -226 -326 143 -257 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 43 E= 2.5e-048 0.046512 0.953488 0.000000 0.000000 0.116279 0.000000 0.000000 0.883721 0.046512 0.000000 0.953488 0.000000 0.000000 0.674419 0.023256 0.302326 0.837209 0.162791 0.000000 0.000000 0.000000 0.627907 0.000000 0.372093 0.000000 0.976744 0.000000 0.023256 0.325581 0.023256 0.000000 0.651163 0.767442 0.000000 0.232558 0.000000 0.558140 0.046512 0.046512 0.348837 0.651163 0.093023 0.232558 0.023256 0.302326 0.255814 0.023256 0.418605 0.651163 0.232558 0.000000 0.116279 0.860465 0.069767 0.000000 0.069767 0.953488 0.000000 0.000000 0.046512 0.023256 0.744186 0.046512 0.186047 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCAYCWAWAHAAAC MEME-3 regular expression -------------------------------------------------------------------------------- CTG[CT]A[CT]C[TA][AG][AT][AG][TAC][AC]AAC -------------------------------------------------------------------------------- Time 938.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGRGAGARAGARAGAGARAGA MEME-4 width = 22 sites = 15 llr = 303 E-value = 1.4e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9171a:7391a37:a2938:a pos.-specific C 1:::1:1:::1:1:2:1::::: probability G 91938:82617:618:7:5:a: matrix T ::1:::111:1::1:::112:: bits 2.2 * * * * 1.9 * * * ** 1.7 * * * * * ** 1.5 * * * * * * *** Relative 1.3 *** * * * * * *** Entropy 1.1 ****** * * * *** * *** (29.1 bits) 0.9 ******** * * *** * *** 0.6 ********** *********** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GAGAGAGAGAGAGAGAGAGAGA consensus G GA A C A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:155244579-155245079 + 71 5.04e-14 gagagcgagc gagagagagagagagagagaga ggagCCGG chr17:48728678-48729178 - 2 5.04e-14 GAGACAGAGA GAGAGAGAGAGAGAGAGAGAGA G chr7:128360869-128361369 - 8 5.04e-14 GTGTGAGAGA GAGAGAGAGAGAGAGAGAGAGA CAGGGGA chr1:201435687-201436187 + 67 1.96e-12 tgtgtgtgAa gagagagagagaaacagagaga gaaagggaaa chr12:54032549-54033049 - 74 2.52e-11 GGGGA GAGGGAGTGAGAGAGAGAAAGA GGGAAGGGGG chr1:61692261-61692761 + 17 2.52e-11 aggaagaaga gagaaagaaagaaagaaaaaga aagagaaaga chr10:101442068-10144256 - 1 3.16e-11 CACATACACA CAGAGACAGAGAGAGAGAGAGA chr5:142699009-142699509 + 37 3.20e-10 CCACTACCCT GAGAAAGAGACAGAGAGATTGA ACCAACAGCT chr10:79445875-79446375 - 44 4.15e-10 TAGTCTAAGA GAGAGAGAAAGAAGGAGTATGA GAAAGGAGGG chr1:234723932-234724432 + 26 1.38e-09 aggaagggag gagggaggtggagagagagaga AAAAAACCAC chr12:106357648-10635814 - 1 2.61e-09 TGCTGCTCAC GAAGGAGGAAGAAACAGATAGA chr22:20496157-20496657 - 32 3.63e-09 GAGAGTTAAG GAGGGAGGGAAAGGGAATGAGA GAGGGAGGGG chr1:155226592-155227092 - 61 4.97e-09 CTCAAAAAAA GGGGGAGAAAAAGTGACAAAGA AGTTGTGAGG chr12:45615201-45615701 - 3 1.94e-08 GGAGGGAAGT CAGAGATAAATAATGAAAATGA TT chr8:37513938-37514438 + 37 6.07e-08 gatacacaca gatacacagacacacacagaga cacacacaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:155244579-155245079 5e-14 70_[+4]_8 chr17:48728678-48729178 5e-14 1_[-4]_77 chr7:128360869-128361369 5e-14 7_[-4]_71 chr1:201435687-201436187 2e-12 66_[+4]_12 chr12:54032549-54033049 2.5e-11 73_[-4]_5 chr1:61692261-61692761 2.5e-11 16_[+4]_62 chr10:101442068-10144256 3.2e-11 [-4]_78 chr5:142699009-142699509 3.2e-10 36_[+4]_42 chr10:79445875-79446375 4.1e-10 43_[-4]_35 chr1:234723932-234724432 1.4e-09 25_[+4]_53 chr12:106357648-10635814 2.6e-09 [-4]_78 chr22:20496157-20496657 3.6e-09 31_[-4]_47 chr1:155226592-155227092 5e-09 60_[-4]_18 chr12:45615201-45615701 1.9e-08 2_[-4]_76 chr8:37513938-37514438 6.1e-08 36_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGRGAGARAGARAGAGARAGA width=22 seqs=15 chr1:155244579-155245079 ( 71) GAGAGAGAGAGAGAGAGAGAGA 1 chr17:48728678-48729178 ( 2) GAGAGAGAGAGAGAGAGAGAGA 1 chr7:128360869-128361369 ( 8) GAGAGAGAGAGAGAGAGAGAGA 1 chr1:201435687-201436187 ( 67) GAGAGAGAGAGAAACAGAGAGA 1 chr12:54032549-54033049 ( 74) GAGGGAGTGAGAGAGAGAAAGA 1 chr1:61692261-61692761 ( 17) GAGAAAGAAAGAAAGAAAAAGA 1 chr10:101442068-10144256 ( 1) CAGAGACAGAGAGAGAGAGAGA 1 chr5:142699009-142699509 ( 37) GAGAAAGAGACAGAGAGATTGA 1 chr10:79445875-79446375 ( 44) GAGAGAGAAAGAAGGAGTATGA 1 chr1:234723932-234724432 ( 26) GAGGGAGGTGGAGAGAGAGAGA 1 chr12:106357648-10635814 ( 1) GAAGGAGGAAGAAACAGATAGA 1 chr22:20496157-20496657 ( 32) GAGGGAGGGAAAGGGAATGAGA 1 chr1:155226592-155227092 ( 61) GGGGGAGAAAAAGTGACAAAGA 1 chr12:45615201-45615701 ( 3) CAGAGATAAATAATGAAAATGA 1 chr8:37513938-37514438 ( 37) GATACACAGACACACACAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 12.9001 E= 1.4e-026 -1055 -105 165 -1055 206 -1055 -205 -1055 -174 -1055 165 -174 158 -1055 27 -1055 -74 -205 153 -1055 216 -1055 -1055 -1055 -1055 -105 153 -174 171 -1055 -47 -174 58 -1055 112 -174 206 -1055 -205 -1055 -74 -105 127 -174 216 -1055 -1055 -1055 58 -205 112 -1055 171 -1055 -105 -74 -1055 -47 153 -1055 216 -1055 -1055 -1055 -16 -105 127 -1055 195 -1055 -1055 -74 58 -1055 95 -74 184 -1055 -1055 -16 -1055 -1055 185 -1055 216 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 15 E= 1.4e-026 0.000000 0.133333 0.866667 0.000000 0.933333 0.000000 0.066667 0.000000 0.066667 0.000000 0.866667 0.066667 0.666667 0.000000 0.333333 0.000000 0.133333 0.066667 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.133333 0.800000 0.066667 0.733333 0.000000 0.200000 0.066667 0.333333 0.000000 0.600000 0.066667 0.933333 0.000000 0.066667 0.000000 0.133333 0.133333 0.666667 0.066667 1.000000 0.000000 0.000000 0.000000 0.333333 0.066667 0.600000 0.000000 0.733333 0.000000 0.133333 0.133333 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.133333 0.666667 0.000000 0.866667 0.000000 0.000000 0.133333 0.333333 0.000000 0.533333 0.133333 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRGAGARAGARAGAGARAGA MEME-4 regular expression -------------------------------------------------------------------------------- GAG[AG]GAG[AG][GA]AGA[GA]A[GC]A[GA]A[GA][AT]GA -------------------------------------------------------------------------------- Time 1207.84 secs. ******************************************************************************** ******************************************************************************** MOTIF WMACAAMAYAMAMAMAMMACAA MEME-5 width = 22 sites = 17 llr = 288 E-value = 2.7e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 54918669:a5a4957557286 pos.-specific C 15:8:24:5:3:6:51551822 probability G 11:::1:1::::::::1::1:: matrix T 3111221:5:2:11:2::2::1 bits 2.2 * * 1.9 * * 1.7 * * * * * 1.5 * * * * * * Relative 1.3 * * * * * * * Entropy 1.1 *** *** * *** * * (24.4 bits) 0.9 *** **** ***** ***** 0.6 *** **************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel ACACAAAACAAACAAAAAACAA consensus TA T C T C A CTCC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrX:68462578-68463078 + 6 7.82e-13 caaaa aaacaaaacaaaaacaaaacaa aaacacagtg chr1:151809140-151809640 + 61 6.29e-11 caaaacaaac aaacagaacaaacaaacaacaa caacaaaaac chrX:41333454-41333954 + 60 2.57e-10 GTGTTAGGaa aaaaaaaacaaaaacaaaaaaa acgaaaaaCG chr22:49975477-49975977 - 47 4.85e-10 ACACCACAAA ACACATAACACACACACCACAC ACAACACCAC chr12:7995082-7995582 + 2 5.46e-10 C TAACTAAATACACAATCCACAA GCCACTGATC chr12:7859947-7860447 - 63 5.46e-10 TCTTCAGGCC TAACTAAATACACAATCCACAA GCCACTGATC chr1:229224144-229224644 - 8 2.89e-09 ACAAAGACAC ATACAACATATACACAAAACAT ACAAATA chr6:28898184-28898684 - 47 8.28e-09 AGCAAAACTC CGTCAAAACAAACAAACAAAAA CTGGATAAAC chr19:38243749-38244249 + 10 9.89e-09 aaaacaaag aaataaaataaaataaaaCCAA TTCACATAGC chr3:194326393-194326893 + 64 9.89e-09 acacacaacc acacacaacatacaacacacac aaccacacac chr7:150359954-150360454 + 43 1.18e-08 cacacacaac ccactacacacaaacaccacac acacacacag chr1:228782555-228783055 - 50 1.95e-08 CACAACACAT ACACATCACAAACACACACCCC ACACAGCATA chr17:42459172-42459672 - 79 6.88e-08 . TCACAAAACAAAATATGAAGAA ACAGCAATTC chr18:58781559-58782059 - 54 8.98e-08 ACACTACACT GCACATTATACACACACCACCA CCAAGGCATA chr6:56529579-56530079 + 52 8.98e-08 caaataaaaa tgaaaacataaataaaactaaa gcaTGACATG chr5:59303279-59303779 - 76 1.48e-07 ATC TCTCACCGTATACAAAAATCAA CTCAAGATGG chr7:133492144-133492644 - 27 1.57e-07 CCCCTATCTA ACACTCCATAAAAACTACTCCT CTTTTTATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:68462578-68463078 7.8e-13 5_[+5]_73 chr1:151809140-151809640 6.3e-11 60_[+5]_18 chrX:41333454-41333954 2.6e-10 59_[+5]_19 chr22:49975477-49975977 4.9e-10 46_[-5]_32 chr12:7995082-7995582 5.5e-10 1_[+5]_77 chr12:7859947-7860447 5.5e-10 62_[-5]_16 chr1:229224144-229224644 2.9e-09 7_[-5]_71 chr6:28898184-28898684 8.3e-09 46_[-5]_32 chr19:38243749-38244249 9.9e-09 9_[+5]_69 chr3:194326393-194326893 9.9e-09 63_[+5]_15 chr7:150359954-150360454 1.2e-08 42_[+5]_36 chr1:228782555-228783055 1.9e-08 49_[-5]_29 chr17:42459172-42459672 6.9e-08 78_[-5] chr18:58781559-58782059 9e-08 53_[-5]_25 chr6:56529579-56530079 9e-08 51_[+5]_27 chr5:59303279-59303779 1.5e-07 75_[-5]_3 chr7:133492144-133492644 1.6e-07 26_[-5]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WMACAAMAYAMAMAMAMMACAA width=22 seqs=17 chrX:68462578-68463078 ( 6) AAACAAAACAAAAACAAAACAA 1 chr1:151809140-151809640 ( 61) AAACAGAACAAACAAACAACAA 1 chrX:41333454-41333954 ( 60) AAAAAAAACAAAAACAAAAAAA 1 chr22:49975477-49975977 ( 47) ACACATAACACACACACCACAC 1 chr12:7995082-7995582 ( 2) TAACTAAATACACAATCCACAA 1 chr12:7859947-7860447 ( 63) TAACTAAATACACAATCCACAA 1 chr1:229224144-229224644 ( 8) ATACAACATATACACAAAACAT 1 chr6:28898184-28898684 ( 47) CGTCAAAACAAACAAACAAAAA 1 chr19:38243749-38244249 ( 10) AAATAAAATAAAATAAAACCAA 1 chr3:194326393-194326893 ( 64) ACACACAACATACAACACACAC 1 chr7:150359954-150360454 ( 43) CCACTACACACAAACACCACAC 1 chr1:228782555-228783055 ( 50) ACACATCACAAACACACACCCC 1 chr17:42459172-42459672 ( 79) TCACAAAACAAAATATGAAGAA 1 chr18:58781559-58782059 ( 54) GCACATTATACACACACCACCA 1 chr6:56529579-56530079 ( 52) TGAAAACATAAATAAAACTAAA 1 chr5:59303279-59303779 ( 76) TCTCACCGTATACAAAAATCAA 1 chr7:133492144-133492644 ( 27) ACACTCCATAAAAACTACTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.2105 E= 2.7e-012 124 -123 -223 40 66 77 -123 -192 198 -1073 -1073 -93 -93 157 -1073 -192 177 -1073 -1073 7 140 -65 -223 -34 140 35 -1073 -192 207 -1073 -223 -1073 -1073 94 -1073 107 216 -1073 -1073 -1073 124 9 -1073 -34 216 -1073 -1073 -1073 66 109 -1073 -192 198 -1073 -1073 -93 124 77 -1073 -1073 166 -223 -1073 7 107 77 -223 -1073 124 77 -1073 -1073 166 -123 -1073 -34 -34 147 -223 -1073 188 -65 -1073 -1073 153 -23 -1073 -93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 17 E= 2.7e-012 0.529412 0.117647 0.058824 0.294118 0.352941 0.470588 0.117647 0.058824 0.882353 0.000000 0.000000 0.117647 0.117647 0.823529 0.000000 0.058824 0.764706 0.000000 0.000000 0.235294 0.588235 0.176471 0.058824 0.176471 0.588235 0.352941 0.000000 0.058824 0.941176 0.000000 0.058824 0.000000 0.000000 0.529412 0.000000 0.470588 1.000000 0.000000 0.000000 0.000000 0.529412 0.294118 0.000000 0.176471 1.000000 0.000000 0.000000 0.000000 0.352941 0.588235 0.000000 0.058824 0.882353 0.000000 0.000000 0.117647 0.529412 0.470588 0.000000 0.000000 0.705882 0.058824 0.000000 0.235294 0.470588 0.470588 0.058824 0.000000 0.529412 0.470588 0.000000 0.000000 0.705882 0.117647 0.000000 0.176471 0.176471 0.764706 0.058824 0.000000 0.823529 0.176471 0.000000 0.000000 0.647059 0.235294 0.000000 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMACAAMAYAMAMAMAMMACAA MEME-5 regular expression -------------------------------------------------------------------------------- [AT][CA]AC[AT]A[AC]A[CT]A[AC]A[CA]A[AC][AT][AC][AC]ACA[AC] -------------------------------------------------------------------------------- Time 1480.18 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGAASACTRGTCCTG MEME-6 width = 16 sites = 29 llr = 395 E-value = 8.7e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::9a:81131::1:: pos.-specific C :::::5172::2871: probability G :1a1:4112691::19 matrix T a9:::::15117229: bits 2.2 * * 1.9 * * * 1.7 * * * 1.5 ***** * Relative 1.3 ***** * ** Entropy 1.1 ***** * * * ** (19.6 bits) 0.9 ***** * * **** 0.6 ******** ******* 0.4 ******** ******* 0.2 **************** 0.0 ---------------- Multilevel TTGAACACTGGTCCTG consensus G CA CTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr20:2387148-2387648 + 56 2.13e-10 ggggtcactg ttgaacactggtcctg caCAGTGCTC chr8:74171321-74171821 - 40 2.13e-10 GGTGTCACTG TTGAACACTGGTCCTG CACAGTCTAG chr5:173592012-173592512 + 50 3.74e-09 ggtggcactg ttgaacaccagtcctg cacagctcca chr20:38242799-38243299 - 31 1.91e-08 GGTGTCACTG TTGAACACTGGTCCCG CACAGCCCAG chr13:27481736-27482236 + 34 2.54e-08 ggtgtcagtg ttgaagagtagtcctg taccctgcag chr2:128469137-128469637 + 58 3.22e-08 ggtgtcactg ttgaacacaagccctg cacagctctg chr9:126009012-126009512 - 29 3.63e-08 GGTGCCACTG TTGAAGACTGGACCTG CACAGCTTGG chr20:33947635-33948135 + 43 6.00e-08 ggtgtcgctg ttgaagactgattctg catagtctca chr19:5515655-5516155 + 62 6.00e-08 ggtgttgctg ttgaacaatagtcttg cacagtctgt chr20:64145405-64145905 - 43 1.03e-07 GGTGTCGCCG TGGAACACCGGTCTTG TACAGTCCTG chr6:18823734-18824234 - 34 1.26e-07 GGTGGCGCTG TTGAACACTGGTTCTT GCACAGCCCA chr16:86019365-86019865 + 41 1.26e-07 tgtgtcgctg ttgaacactgggtttg catagcctga chr17:74085368-74085868 - 53 1.26e-07 GATGTCGCTG TTGGAGACTGGGCCTG CAGAGCTCAG chr11:57619268-57619768 + 54 1.53e-07 ggtgtcattg ttgaaggcttgtcctg catagcccca chr1:41444206-41444706 + 45 1.70e-07 ggggtcgctg ttgaagacatgttctg cacagctttg chr6:2482726-2483226 - 32 2.09e-07 GGTGGCGCTG TTGAAGCTTAGTCCTG CACAGCCCTG chr13:44876844-44877344 - 53 2.52e-07 GGTGTCGCTG TTGGAGACGAGTCTTG CATGGTTTGT chr19:16631392-16631892 - 48 2.52e-07 GGTGTCGCTG TGGAAGACTATTCCTG TACAGCTGTG chr6:131923340-131923840 + 30 5.13e-07 ggtgtcgctg ttggacatgggtcttg ctaggttcag chr3:55405430-55405930 - 18 6.70e-07 GGTGCCGTTG TTGGAGATGGGTTCTG TATGGTCTGA chr21:7798482-7798982 + 39 7.83e-07 ggggacgctg ttgaacaccggcctgg tgcagTTGGC chr12:111304504-11130500 + 48 8.44e-07 ggtgtcgctg ttgaacaccggtcata gcagctttgt chr17:18166850-18167350 + 55 9.20e-07 ggtgtcactg ttgaagcatggccctg tgcagtccag chr9:122379276-122379776 + 54 9.20e-07 ggtggcactg ttgaatgccagtcctg tgcagcctca chr12:132194005-13219450 - 44 1.07e-06 GGTGTCGCTG TTGAAGATGGTCCCTG CACGGCTGCA chr4:4726002-4726502 - 47 1.25e-06 GGTGTCACTG TTGAAGACAAACTCTG TGCAGCTTGC chr8:101756197-101756697 - 50 2.08e-06 AGTGGCGCTG TTGAACACGGGCCAGG TACAGTCTGA chr2:231410177-231410677 + 9 2.08e-06 gggcgctg tggaacagcgggcctg cacagtcctg chr1:53125522-53126022 - 41 3.59e-06 GGTGGCCCTG TGGAACGCAGGTCCCG CACGCTCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:2387148-2387648 2.1e-10 55_[+6]_29 chr8:74171321-74171821 2.1e-10 39_[-6]_45 chr5:173592012-173592512 3.7e-09 49_[+6]_35 chr20:38242799-38243299 1.9e-08 30_[-6]_54 chr13:27481736-27482236 2.5e-08 33_[+6]_51 chr2:128469137-128469637 3.2e-08 57_[+6]_27 chr9:126009012-126009512 3.6e-08 28_[-6]_56 chr20:33947635-33948135 6e-08 42_[+6]_42 chr19:5515655-5516155 6e-08 61_[+6]_23 chr20:64145405-64145905 1e-07 42_[-6]_42 chr6:18823734-18824234 1.3e-07 33_[-6]_51 chr16:86019365-86019865 1.3e-07 40_[+6]_44 chr17:74085368-74085868 1.3e-07 52_[-6]_32 chr11:57619268-57619768 1.5e-07 53_[+6]_31 chr1:41444206-41444706 1.7e-07 44_[+6]_40 chr6:2482726-2483226 2.1e-07 31_[-6]_53 chr13:44876844-44877344 2.5e-07 52_[-6]_32 chr19:16631392-16631892 2.5e-07 47_[-6]_37 chr6:131923340-131923840 5.1e-07 29_[+6]_55 chr3:55405430-55405930 6.7e-07 17_[-6]_67 chr21:7798482-7798982 7.8e-07 38_[+6]_46 chr12:111304504-11130500 8.4e-07 47_[+6]_37 chr17:18166850-18167350 9.2e-07 54_[+6]_30 chr9:122379276-122379776 9.2e-07 53_[+6]_31 chr12:132194005-13219450 1.1e-06 43_[-6]_41 chr4:4726002-4726502 1.2e-06 46_[-6]_38 chr8:101756197-101756697 2.1e-06 49_[-6]_35 chr2:231410177-231410677 2.1e-06 8_[+6]_76 chr1:53125522-53126022 3.6e-06 40_[-6]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGAASACTRGTCCTG width=16 seqs=29 chr20:2387148-2387648 ( 56) TTGAACACTGGTCCTG 1 chr8:74171321-74171821 ( 40) TTGAACACTGGTCCTG 1 chr5:173592012-173592512 ( 50) TTGAACACCAGTCCTG 1 chr20:38242799-38243299 ( 31) TTGAACACTGGTCCCG 1 chr13:27481736-27482236 ( 34) TTGAAGAGTAGTCCTG 1 chr2:128469137-128469637 ( 58) TTGAACACAAGCCCTG 1 chr9:126009012-126009512 ( 29) TTGAAGACTGGACCTG 1 chr20:33947635-33948135 ( 43) TTGAAGACTGATTCTG 1 chr19:5515655-5516155 ( 62) TTGAACAATAGTCTTG 1 chr20:64145405-64145905 ( 43) TGGAACACCGGTCTTG 1 chr6:18823734-18824234 ( 34) TTGAACACTGGTTCTT 1 chr16:86019365-86019865 ( 41) TTGAACACTGGGTTTG 1 chr17:74085368-74085868 ( 53) TTGGAGACTGGGCCTG 1 chr11:57619268-57619768 ( 54) TTGAAGGCTTGTCCTG 1 chr1:41444206-41444706 ( 45) TTGAAGACATGTTCTG 1 chr6:2482726-2483226 ( 32) TTGAAGCTTAGTCCTG 1 chr13:44876844-44877344 ( 53) TTGGAGACGAGTCTTG 1 chr19:16631392-16631892 ( 48) TGGAAGACTATTCCTG 1 chr6:131923340-131923840 ( 30) TTGGACATGGGTCTTG 1 chr3:55405430-55405930 ( 18) TTGGAGATGGGTTCTG 1 chr21:7798482-7798982 ( 39) TTGAACACCGGCCTGG 1 chr12:111304504-11130500 ( 48) TTGAACACCGGTCATA 1 chr17:18166850-18167350 ( 55) TTGAAGCATGGCCCTG 1 chr9:122379276-122379776 ( 54) TTGAATGCCAGTCCTG 1 chr12:132194005-13219450 ( 44) TTGAAGATGGTCCCTG 1 chr4:4726002-4726502 ( 47) TTGAAGACAAACTCTG 1 chr8:101756197-101756697 ( 50) TTGAACACGGGCCAGG 1 chr2:231410177-231410677 ( 9) TGGAACAGCGGGCCTG 1 chr1:53125522-53126022 ( 41) TGGAACGCAGGTCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.6646 E= 8.7e-023 -1150 -1150 -1150 216 -1150 -1150 -100 195 -1150 -1150 185 -1150 195 -1150 -100 -1150 216 -1150 -1150 -1150 -1150 90 70 -269 189 -200 -142 -1150 -170 139 -200 -70 -70 -42 -68 111 47 -1150 117 -170 -170 -1150 164 -170 -269 -42 -142 155 -1150 152 -1150 -11 -170 139 -1150 -11 -1150 -200 -200 195 -269 -1150 175 -269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 29 E= 8.7e-023 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.137931 0.862069 0.000000 0.000000 1.000000 0.000000 0.862069 0.000000 0.137931 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.517241 0.448276 0.034483 0.827586 0.068966 0.103448 0.000000 0.068966 0.724138 0.068966 0.137931 0.137931 0.206897 0.172414 0.482759 0.310345 0.000000 0.620690 0.068966 0.068966 0.000000 0.862069 0.068966 0.034483 0.206897 0.103448 0.655172 0.000000 0.793103 0.000000 0.206897 0.068966 0.724138 0.000000 0.206897 0.000000 0.068966 0.068966 0.862069 0.034483 0.000000 0.931034 0.034483 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGAASACTRGTCCTG MEME-6 regular expression -------------------------------------------------------------------------------- TTGAA[CG]AC[TC][GA]G[TC][CT][CT]TG -------------------------------------------------------------------------------- Time 1744.12 secs. ******************************************************************************** ******************************************************************************** MOTIF WGCAACCAAGCTGTMCTGDGYT MEME-7 width = 22 sites = 23 llr = 376 E-value = 1.4e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 Description -------------------------------------------------------------------------------- Simplified A 62:8a:197:::1:3:1221:: pos.-specific C 1:71:a8:1:a::2571:1:63 probability G :81::::11a::8:11:747:: matrix T 3:21::1::::a:7227:2137 bits 2.2 1.9 ** * * 1.7 ** * * * 1.5 ** * *** Relative 1.3 *** * *** Entropy 1.1 * *** * **** * (23.6 bits) 0.9 ************* ** * 0.6 ************** *** *** 0.4 ************** *** *** 0.2 ********************** 0.0 ---------------------- Multilevel AGCAACCAAGCTGTCCTGGGCT consensus T T A A TC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr3:13762871-13763371 + 43 1.01e-11 gggtctgagc tgcaaccaagctgtcttgtgct aacactgcta chr4:7238256-7238756 - 51 3.47e-11 CACTCCTGAG AGCAACCAAGCTGCTCTGAGCT CACAGCGCCA chr9:36991483-36991983 + 44 3.99e-11 aaccctggac agcaactaagctgtcctgggtc gatggtgcca chr17:74437608-74438108 - 57 2.60e-10 CTGGGAAAAC AGCAACCAAGCTTTCCTGGTCT GACAGTGACC chr19:5534862-5535362 + 37 3.78e-10 CCAACCTTGC TGCAACCAAGCTGTACCATGCT ACAAGCTCCA chr15:100869469-10086996 + 35 4.25e-10 TTGCAATAGT AGGTaccaagctgtcctgggtt aatgacgcca chr16:51813543-51814043 - 57 5.40e-10 AAAGCAGACT AGCAACTACGCTGTCCTGGGCC CATCCTGCCA chr12:106282308-10628280 + 37 1.86e-09 cccagcagcc tgcaaccgagctgtcctggcct acttgctcca chr10:93126406-93126906 - 52 2.06e-09 GAATACAAGG CACAACCAAGCTGTATTGTGCC AGTGCTGCCC chr5:61357695-61358195 + 35 2.83e-09 CTAGTTGATG AGTTACCAAGCTGTCCTTGGTT GTTAGCGCCA chr5:169850349-169850849 - 58 1.11e-08 CATATTAAGC TGCAACCAAGCTACCCCAAGCT CACAATGCCA chr14:68926132-68926632 + 42 1.76e-08 CAGGTGAGGC AGCAACTAAGCCATCCTGTGCC AACAGCACCA chr5:6820799-6821299 - 59 2.10e-08 CCCACCGCTC AACCACCAAGCTGTCGTGGGAT GGTGGCGACC chr6:90286843-90287343 - 53 2.29e-08 ACCCTTCTCC AGCAACCATGCTATGTTGAGTT GATGGCTCCA chr5:149775743-149776243 + 18 2.50e-08 ATTCTTATGA CATAACCAAGCTGTCCAAAGCC AGTATTGCCC chr6:149026425-149026925 + 24 2.97e-08 TGACTTGGCA aataaccgagctgttctggttc aatagcgcca chr19:970610-971110 - 32 3.82e-08 GGCGGGGGCC TGCAACAAGGCTGCTCTGTGTC GACAGCGCCA chr5:149268885-149269385 + 33 6.24e-08 TTactctgac agcaaccaagctgtagacaact agtcaacatt chr5:142699009-142699509 + 3 2.58e-07 AC TGTATCCAAGCTGGACTGCACT TTCCACTACC chr8:74171321-74171821 - 10 3.41e-07 TGCACAGTCT AGCAACCACGGTGTTTTACTCT TTGCCAGAT chr11:70942538-70943038 + 43 3.41e-07 CTCCTTAACT CTGCACCAAGCTGTACCGGGTT AACACTGCCA chr7:2028659-2029159 + 42 5.78e-07 cttcacacag tgcaacaaggctgcgcagggca acaaggctgc chr13:93248495-93248995 - 74 7.00e-07 TCCAC AGTAACCAGGCTGAAATGCGGT TGAAGGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:13762871-13763371 1e-11 42_[+7]_36 chr4:7238256-7238756 3.5e-11 50_[-7]_28 chr9:36991483-36991983 4e-11 43_[+7]_35 chr17:74437608-74438108 2.6e-10 56_[-7]_22 chr19:5534862-5535362 3.8e-10 36_[+7]_42 chr15:100869469-10086996 4.2e-10 34_[+7]_44 chr16:51813543-51814043 5.4e-10 56_[-7]_22 chr12:106282308-10628280 1.9e-09 36_[+7]_42 chr10:93126406-93126906 2.1e-09 51_[-7]_27 chr5:61357695-61358195 2.8e-09 34_[+7]_44 chr5:169850349-169850849 1.1e-08 57_[-7]_21 chr14:68926132-68926632 1.8e-08 41_[+7]_37 chr5:6820799-6821299 2.1e-08 58_[-7]_20 chr6:90286843-90287343 2.3e-08 52_[-7]_26 chr5:149775743-149776243 2.5e-08 17_[+7]_61 chr6:149026425-149026925 3e-08 23_[+7]_55 chr19:970610-971110 3.8e-08 31_[-7]_47 chr5:149268885-149269385 6.2e-08 32_[+7]_46 chr5:142699009-142699509 2.6e-07 2_[+7]_76 chr8:74171321-74171821 3.4e-07 9_[-7]_69 chr11:70942538-70943038 3.4e-07 42_[+7]_36 chr7:2028659-2029159 5.8e-07 41_[+7]_37 chr13:93248495-93248995 7e-07 73_[-7]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGCAACCAAGCTGTMCTGDGYT width=22 seqs=23 chr3:13762871-13763371 ( 43) TGCAACCAAGCTGTCTTGTGCT 1 chr4:7238256-7238756 ( 51) AGCAACCAAGCTGCTCTGAGCT 1 chr9:36991483-36991983 ( 44) AGCAACTAAGCTGTCCTGGGTC 1 chr17:74437608-74438108 ( 57) AGCAACCAAGCTTTCCTGGTCT 1 chr19:5534862-5535362 ( 37) TGCAACCAAGCTGTACCATGCT 1 chr15:100869469-10086996 ( 35) AGGTACCAAGCTGTCCTGGGTT 1 chr16:51813543-51814043 ( 57) AGCAACTACGCTGTCCTGGGCC 1 chr12:106282308-10628280 ( 37) TGCAACCGAGCTGTCCTGGCCT 1 chr10:93126406-93126906 ( 52) CACAACCAAGCTGTATTGTGCC 1 chr5:61357695-61358195 ( 35) AGTTACCAAGCTGTCCTTGGTT 1 chr5:169850349-169850849 ( 58) TGCAACCAAGCTACCCCAAGCT 1 chr14:68926132-68926632 ( 42) AGCAACTAAGCCATCCTGTGCC 1 chr5:6820799-6821299 ( 59) AACCACCAAGCTGTCGTGGGAT 1 chr6:90286843-90287343 ( 53) AGCAACCATGCTATGTTGAGTT 1 chr5:149775743-149776243 ( 18) CATAACCAAGCTGTCCAAAGCC 1 chr6:149026425-149026925 ( 24) AATAACCGAGCTGTTCTGGTTC 1 chr19:970610-971110 ( 32) TGCAACAAGGCTGCTCTGTGTC 1 chr5:149268885-149269385 ( 33) AGCAACCAAGCTGTAGACAACT 1 chr5:142699009-142699509 ( 3) TGTATCCAAGCTGGACTGCACT 1 chr8:74171321-74171821 ( 10) AGCAACCACGGTGTTTTACTCT 1 chr11:70942538-70943038 ( 43) CTGCACCAAGCTGTACCGGGTT 1 chr7:2028659-2029159 ( 42) TGCAACAAGGCTGCGCAGGGCA 1 chr13:93248495-93248995 ( 74) AGTAACCAGGCTGAAATGCGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.6152 E= 1.4e-025 134 -108 -1117 45 -36 -1117 150 -236 -1117 133 -167 -4 189 -167 -1117 -136 210 -1117 -1117 -236 -1117 185 -1117 -1117 -136 150 -1117 -78 203 -1117 -167 -1117 173 -167 -108 -236 -1117 -1117 185 -1117 -1117 179 -267 -1117 -1117 -267 -1117 210 -78 -1117 158 -236 -236 -67 -267 173 22 79 -167 -36 -236 133 -167 -36 -78 -108 -1117 173 -36 -267 142 -236 -4 -108 65 -4 -136 -267 142 -78 -236 114 -267 45 -236 14 -1117 154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 23 E= 1.4e-025 0.565217 0.130435 0.000000 0.304348 0.173913 0.000000 0.782609 0.043478 0.000000 0.695652 0.086957 0.217391 0.826087 0.086957 0.000000 0.086957 0.956522 0.000000 0.000000 0.043478 0.000000 1.000000 0.000000 0.000000 0.086957 0.782609 0.000000 0.130435 0.913043 0.000000 0.086957 0.000000 0.739130 0.086957 0.130435 0.043478 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 0.043478 0.000000 0.956522 0.130435 0.000000 0.826087 0.043478 0.043478 0.173913 0.043478 0.739130 0.260870 0.478261 0.086957 0.173913 0.043478 0.695652 0.086957 0.173913 0.130435 0.130435 0.000000 0.739130 0.173913 0.043478 0.739130 0.043478 0.217391 0.130435 0.434783 0.217391 0.086957 0.043478 0.739130 0.130435 0.043478 0.608696 0.043478 0.304348 0.043478 0.304348 0.000000 0.652174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAACCAAGCTGTMCTGDGYT MEME-7 regular expression -------------------------------------------------------------------------------- [AT]G[CT]AACCAAGCTGT[CA]CTG[GAT]G[CT][TC] -------------------------------------------------------------------------------- Time 2001.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACRCACACAC MEME-8 width = 15 sites = 25 llr = 344 E-value = 3.3e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 Description -------------------------------------------------------------------------------- Simplified A :9:a:915:829:8: pos.-specific C a:a:8:6:9:8:8:9 probability G ::::1::4:2:::21 matrix T :1::2:211:::2:: bits 2.2 * 1.9 ** 1.7 **** * 1.5 **** * * Relative 1.3 **** * ** **** Entropy 1.1 **** * ******* (19.8 bits) 0.9 ****** ******* 0.6 ******* ******* 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CACACACACACACAC consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr19:35947343-35947843 - 79 9.53e-10 TTCGACA CACACACACACACAC ACACACACAC chr12:57111956-57112456 + 2 9.53e-10 a cacacacacacacac acacacGTGC chr14:103104979-10310547 - 50 2.13e-09 CTCTGCTACA CACACACGCACACAC ACCCCTCAGA chr1:201435687-201436187 - 4 3.85e-09 GGCACGCGCA CACACATGCACACAC ATG chr7:150359954-150360454 + 80 5.40e-09 cacagcccac cacacacacaaacac cacaca chr16:75233851-75234351 + 1 1.41e-08 . cacacacacgcacac gtggacgcac chr9:136631247-136631747 + 76 3.92e-08 catgctccca cacatacacacatac atgctctcac chr20:52972195-52972695 - 69 4.75e-08 CGCTTCCTCG CACACACACACTCAC ACCCCCCACA chr10:96229449-96229949 - 33 5.25e-08 CACGCGCGTG CACACACGAACACAC ACACACACAC chr8:28401272-28401772 - 59 7.53e-08 CGCGCGCGTG CACACAAGCACATAC ACCCGAGTGC chr8:37513938-37514438 + 5 7.95e-08 caga cacacatgcacacag acacagagat chr1:150235793-150236293 + 28 1.11e-07 ctagcgcgcg cacacacacgcacgc acgcgcgcac chr7:128360869-128361369 + 59 1.65e-07 cacacacaca cacacacacacacGG CATGTACTGT chr10:5548725-5549225 + 7 2.09e-07 caaaga cacacatgcacatgc atgcacacac chr9:135967589-135968089 - 60 2.80e-07 ATACACAGTG CACACATATGCACAC ATGCACACAA chr19:36850923-36851423 - 65 3.10e-07 CCAGGAACCT CACACTCGCAAACAC AGTGCCCAAC chr1:229224144-229224644 - 81 6.43e-07 AGACA AACATACACAAACAC AATACAAGCA chr1:29236763-29237263 - 75 6.89e-07 CACAACCAAA CTCAGATGCACACAC AACCCACTTG chr19:36572896-36573396 + 1 8.74e-07 . CACACACACACACCA CAATGACGTC chr5:141877102-141877602 - 4 9.38e-07 CGCTTGATGG CACACACTCTAACAC AGG chr19:47241493-47241993 - 40 1.17e-06 CAGCATGCTG CACAGAACCACACAC ATCACACCAT chr5:80959765-80960265 - 47 1.37e-06 ATCCACAATG CACACACTCAGACGC ACAAAAATAC chr19:37371260-37371760 - 57 1.57e-06 ACCCCAGTCT CTCATAAACACATAC ACAGCTACAC chr19:36772288-36772788 + 29 5.12e-06 ACCGGTTCTT CACATCCGCACGCAC AACGAGGGTC chr17:80575280-80575780 - 82 5.12e-06 TATG CACACGTGTGCACAC AGCGGTGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35947343-35947843 9.5e-10 78_[-8]_7 chr12:57111956-57112456 9.5e-10 1_[+8]_84 chr14:103104979-10310547 2.1e-09 49_[-8]_36 chr1:201435687-201436187 3.9e-09 3_[-8]_82 chr7:150359954-150360454 5.4e-09 79_[+8]_6 chr16:75233851-75234351 1.4e-08 [+8]_85 chr9:136631247-136631747 3.9e-08 75_[+8]_10 chr20:52972195-52972695 4.8e-08 68_[-8]_17 chr10:96229449-96229949 5.3e-08 32_[-8]_53 chr8:28401272-28401772 7.5e-08 58_[-8]_27 chr8:37513938-37514438 8e-08 4_[+8]_81 chr1:150235793-150236293 1.1e-07 27_[+8]_58 chr7:128360869-128361369 1.7e-07 58_[+8]_27 chr10:5548725-5549225 2.1e-07 6_[+8]_79 chr9:135967589-135968089 2.8e-07 59_[-8]_26 chr19:36850923-36851423 3.1e-07 64_[-8]_21 chr1:229224144-229224644 6.4e-07 80_[-8]_5 chr1:29236763-29237263 6.9e-07 74_[-8]_11 chr19:36572896-36573396 8.7e-07 [+8]_85 chr5:141877102-141877602 9.4e-07 3_[-8]_82 chr19:47241493-47241993 1.2e-06 39_[-8]_46 chr5:80959765-80960265 1.4e-06 46_[-8]_39 chr19:37371260-37371760 1.6e-06 56_[-8]_29 chr19:36772288-36772788 5.1e-06 28_[+8]_57 chr17:80575280-80575780 5.1e-06 81_[-8]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACRCACACAC width=15 seqs=25 chr19:35947343-35947843 ( 79) CACACACACACACAC 1 chr12:57111956-57112456 ( 2) CACACACACACACAC 1 chr14:103104979-10310547 ( 50) CACACACGCACACAC 1 chr1:201435687-201436187 ( 4) CACACATGCACACAC 1 chr7:150359954-150360454 ( 80) CACACACACAAACAC 1 chr16:75233851-75234351 ( 1) CACACACACGCACAC 1 chr9:136631247-136631747 ( 76) CACATACACACATAC 1 chr20:52972195-52972695 ( 69) CACACACACACTCAC 1 chr10:96229449-96229949 ( 33) CACACACGAACACAC 1 chr8:28401272-28401772 ( 59) CACACAAGCACATAC 1 chr8:37513938-37514438 ( 5) CACACATGCACACAG 1 chr1:150235793-150236293 ( 28) CACACACACGCACGC 1 chr7:128360869-128361369 ( 59) CACACACACACACGG 1 chr10:5548725-5549225 ( 7) CACACATGCACATGC 1 chr9:135967589-135968089 ( 60) CACACATATGCACAC 1 chr19:36850923-36851423 ( 65) CACACTCGCAAACAC 1 chr1:229224144-229224644 ( 81) AACATACACAAACAC 1 chr1:29236763-29237263 ( 75) CTCAGATGCACACAC 1 chr19:36572896-36573396 ( 1) CACACACACACACCA 1 chr5:141877102-141877602 ( 4) CACACACTCTAACAC 1 chr19:47241493-47241993 ( 40) CACAGAACCACACAC 1 chr5:80959765-80960265 ( 47) CACACACTCAGACGC 1 chr19:37371260-37371760 ( 57) CTCATAAACACATAC 1 chr19:36772288-36772788 ( 29) CACATCCGCACGCAC 1 chr17:80575280-80575780 ( 82) CACACGTGTGCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.1438 E= 3.3e-018 -248 180 -1129 -1129 204 -1129 -1129 -148 -1129 185 -1129 -1129 216 -1129 -1129 -1129 -1129 146 -179 -48 198 -279 -279 -248 -90 121 -1129 10 110 -279 53 -148 -248 167 -1129 -148 184 -1129 -79 -248 -48 153 -279 -1129 204 -1129 -279 -248 -1129 160 -1129 -48 184 -279 -79 -1129 -248 167 -179 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 25 E= 3.3e-018 0.040000 0.960000 0.000000 0.000000 0.920000 0.000000 0.000000 0.080000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.760000 0.080000 0.160000 0.880000 0.040000 0.040000 0.040000 0.120000 0.640000 0.000000 0.240000 0.480000 0.040000 0.400000 0.080000 0.040000 0.880000 0.000000 0.080000 0.800000 0.000000 0.160000 0.040000 0.160000 0.800000 0.040000 0.000000 0.920000 0.000000 0.040000 0.040000 0.000000 0.840000 0.000000 0.160000 0.800000 0.040000 0.160000 0.000000 0.040000 0.880000 0.080000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACAC MEME-8 regular expression -------------------------------------------------------------------------------- CACACA[CT][AG]CACACAC -------------------------------------------------------------------------------- Time 2257.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 width = 31 sites = 7 llr = 226 E-value = 6.7e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :1::::7::3::96:4::a::3::::::9a: pos.-specific C ::::a1::4:::::7:7a::617a:1::1:: probability G :79::::a37a::4:63::a:6::19aa::a matrix T a11a:93:3::a1:3:::::4:3:9:::::: bits 2.2 * * * * * 1.9 * ** * ** *** * ** ** 1.7 * ** * ** *** * ** ** 1.5 * *** * *** *** ** ***** Relative 1.3 * ****** *** *** ******** Entropy 1.1 * ****** ************ ********* (46.5 bits) 0.9 ******** ************ ********* 0.6 ******** ********************** 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TGGTCTAGCGGTAACGCCAGCGCCTGGGAAG consensus T GA GTAG TAT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr6:166951279-166951779 - 35 3.26e-18 GAGGGCTCTT TGGTCTAGTGGTAACACCAGTGCCTGGGAAG GCAACCATTA chr1:53185615-53186115 - 46 6.84e-18 GAGGGCTCCT TGGTCTAGCGGTAGCGCCAGTGCCTGGGAAG GCACCCGTTA chr10:71956060-71956560 + 18 4.41e-17 gagggctcct tggtctagcggtagtaccagtgcctgggaag gcacccgtta chr19:48107254-48107754 + 60 1.62e-16 gagggcccct tggtcttggggtaacgccagcgtctgggaag atgcccattg chr22:50241057-50241557 + 35 1.44e-15 gagggctcct tagtctagtggtaatggcagcacctgggaag acgcccatta chr22:23929977-23930477 + 44 9.79e-15 gagggctcct ttgtccagcagtagcgccagcatctgggaag atgcccgttg chr14:75295968-75296468 + 65 7.03e-13 GCCCTCTGGT TGTTCTTGGAGTTACAGCAGCCCCGCGGCAG CTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:166951279-166951779 3.3e-18 34_[-9]_35 chr1:53185615-53186115 6.8e-18 45_[-9]_24 chr10:71956060-71956560 4.4e-17 17_[+9]_52 chr19:48107254-48107754 1.6e-16 59_[+9]_10 chr22:50241057-50241557 1.4e-15 34_[+9]_35 chr22:23929977-23930477 9.8e-15 43_[+9]_26 chr14:75295968-75296468 7e-13 64_[+9]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG width=31 seqs=7 chr6:166951279-166951779 ( 35) TGGTCTAGTGGTAACACCAGTGCCTGGGAAG 1 chr1:53185615-53186115 ( 46) TGGTCTAGCGGTAGCGCCAGTGCCTGGGAAG 1 chr10:71956060-71956560 ( 18) TGGTCTAGCGGTAGTACCAGTGCCTGGGAAG 1 chr19:48107254-48107754 ( 60) TGGTCTTGGGGTAACGCCAGCGTCTGGGAAG 1 chr22:50241057-50241557 ( 35) TAGTCTAGTGGTAATGGCAGCACCTGGGAAG 1 chr22:23929977-23930477 ( 44) TTGTCCAGCAGTAGCGCCAGCATCTGGGAAG 1 chr14:75295968-75296468 ( 65) TGTTCTTGGAGTTACAGCAGCCCCGCGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.3944 E= 6.7e-018 -945 -945 -945 216 -64 -945 137 -64 -945 -945 163 -64 -945 -945 -945 216 -945 185 -945 -945 -945 -95 -945 194 167 -945 -945 35 -945 -945 185 -945 -945 63 5 35 35 -945 137 -945 -945 -945 185 -945 -945 -945 -945 216 194 -945 -945 -64 135 -945 63 -945 -945 137 -945 35 94 -945 105 -945 -945 137 5 -945 -945 185 -945 -945 216 -945 -945 -945 -945 -945 185 -945 -945 105 -945 94 35 -95 105 -945 -945 137 -945 35 -945 185 -945 -945 -945 -945 -95 194 -945 -95 163 -945 -945 -945 185 -945 -945 -945 185 -945 194 -95 -945 -945 216 -945 -945 -945 -945 -945 185 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 7 E= 6.7e-018 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.714286 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.714286 0.000000 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.285714 0.285714 0.285714 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.857143 0.000000 0.000000 0.142857 0.571429 0.000000 0.428571 0.000000 0.000000 0.714286 0.000000 0.285714 0.428571 0.000000 0.571429 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.285714 0.142857 0.571429 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGTCTAGBGGTARCRCCAGYRCCTGGGAAG MEME-9 regular expression -------------------------------------------------------------------------------- TGGTCT[AT]G[CGT][GA]GTA[AG][CT][GA][CG]CAG[CT][GA][CT]CTGGGAAG -------------------------------------------------------------------------------- Time 2513.51 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 width = 31 sites = 4 llr = 162 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::::aaa::::::::a::a:a:::5::a::: pos.-specific C :a8a::::::8::::::::a:::a:::::aa probability G :::::::a:a::a8a::::::aa:5:a:a:: matrix T a:3:::::a:3a:3::aa:::::::a::::: bits 2.2 * *** * * **** * * * 1.9 ** ******* ** ********** ****** 1.7 ** ******* ** ********** ****** 1.5 ** ******* ** ********** ****** Relative 1.3 ** ******* ** ********** ****** Entropy 1.1 ******************************* (58.4 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TCCCAAAGTGCTGGGATTACAGGCATGAGCC consensus T T T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr19:44259495-44259995 + 59 5.59e-19 ccccttggcc tcccaaagtgctgggattacaggcgtgagcc actgcacctg chr5:134039384-134039884 + 1 5.59e-19 . tcccaaagtgctgggattacaggcgtgagcc accgcgcccg chr16:712802-713302 - 51 1.17e-18 CACCTCAGCC TCCCAAAGTGTTGGGATTACAGGCATGAGCC ACGGCACCCC chr19:36170476-36170976 + 10 2.42e-18 gcctcacct tctcaaagtgctgtgattacaggcatgagcc acggtgcccg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:44259495-44259995 5.6e-19 58_[+10]_11 chr5:134039384-134039884 5.6e-19 [+10]_69 chr16:712802-713302 1.2e-18 50_[-10]_19 chr19:36170476-36170976 2.4e-18 9_[+10]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCAAAGTGCTGGGATTACAGGCRTGAGCC width=31 seqs=4 chr19:44259495-44259995 ( 59) TCCCAAAGTGCTGGGATTACAGGCGTGAGCC 1 chr5:134039384-134039884 ( 1) TCCCAAAGTGCTGGGATTACAGGCGTGAGCC 1 chr16:712802-713302 ( 51) TCCCAAAGTGTTGGGATTACAGGCATGAGCC 1 chr19:36170476-36170976 ( 10) TCTCAAAGTGCTGTGATTACAGGCATGAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 14.095 E= 1.2e-008 -865 -865 -865 216 -865 185 -865 -865 -865 144 -865 16 -865 185 -865 -865 216 -865 -865 -865 216 -865 -865 -865 216 -865 -865 -865 -865 -865 185 -865 -865 -865 -865 216 -865 -865 185 -865 -865 144 -865 16 -865 -865 -865 216 -865 -865 185 -865 -865 -865 144 16 -865 -865 185 -865 216 -865 -865 -865 -865 -865 -865 216 -865 -865 -865 216 216 -865 -865 -865 -865 185 -865 -865 216 -865 -865 -865 -865 -865 185 -865 -865 -865 185 -865 -865 185 -865 -865 116 -865 85 -865 -865 -865 -865 216 -865 -865 185 -865 216 -865 -865 -865 -865 -865 185 -865 -865 185 -865 -865 -865 185 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 4 E= 1.2e-008 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCAAAGTGCTGGGATTACAGGCRTGAGCC MEME-10 regular expression -------------------------------------------------------------------------------- TC[CT]CAAAGTG[CT]TG[GT]GATTACAGGC[AG]TGAGCC -------------------------------------------------------------------------------- Time 2772.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:22298326-22298826 5.06e-01 100 chr1:84753445-84753945 8.76e-03 78_[+1(2.50e-07)]_6 chr1:120176302-120176802 5.48e-02 65_[-9(1.32e-05)]_4 chr6:85642862-85643362 3.19e-01 100 chr5:111092026-111092526 7.38e-03 22_[-6(6.03e-05)]_24_[+9(4.09e-05)]_\ 7 chr19:29694554-29695054 1.24e-03 9_[-1(4.40e-07)]_9_[-10(3.95e-05)]_\ 35 chr19:37217751-37218251 1.49e-01 34_[-6(9.31e-05)]_6_[-4(5.06e-05)]_\ 22 chr5:142699009-142699509 3.33e-09 2_[+7(2.58e-07)]_12_[+4(3.20e-10)]_\ 17_[+1(1.14e-05)]_9 chr9:92325206-92325706 9.14e-02 42_[-4(5.85e-06)]_36 chr19:44212436-44212936 9.78e-01 100 chr9:35657499-35657999 6.21e-01 100 chr10:72204249-72204749 4.24e-01 100 chr18:59402354-59402854 4.41e-01 100 chr6:31541652-31542152 4.31e-01 100 chr19:34734123-34734623 8.00e-01 100 chr1:109484022-109484522 8.00e-01 100 chr3:55405430-55405930 7.72e-05 17_[-6(6.70e-07)]_[+1(1.69e-05)]_51 chr17:42459172-42459672 1.83e-03 78_[-5(6.88e-08)] chr10:42782577-42783077 7.70e-01 100 chr14:28768017-28768517 4.31e-02 9_[-10(6.86e-05)]_60 chr1:25858976-25859476 6.07e-01 100 chr16:712802-713302 3.91e-13 33_[-1(1.79e-06)]_1_[-10(1.17e-18)]_\ 19 chr14:90383197-90383697 2.65e-01 100 chr1:204516293-204516793 7.80e-02 48_[+4(7.08e-05)]_30 chr17:40560190-40560690 5.27e-04 4_[+4(1.09e-05)]_26_[+1(5.37e-08)]_\ 32 chr14:102314212-10231471 4.09e-01 100 chr12:56116532-56117032 9.31e-02 21_[-4(8.53e-05)]_57 chrX:53225024-53225524 6.10e-01 100 chr1:110196856-110197356 5.01e-02 28_[-1(3.20e-06)]_56 chr17:74437608-74438108 8.20e-06 38_[-1(2.47e-05)]_2_[-7(2.60e-10)]_\ 22 chr17:74203446-74203946 3.79e-01 100 chr2:201860552-201861052 4.03e-02 41_[-7(1.16e-05)]_37 chr8:23246565-23247065 8.01e-01 100 chr15:100869469-10086996 1.46e-06 34_[+7(4.25e-10)]_2_[+1(2.00e-06)]_\ 26 chr6:53651761-53652261 2.20e-01 100 chrX:101408008-101408508 5.60e-01 73_[+4(7.08e-05)]_5 chr11:76799165-76799665 7.30e-02 45_[+1(3.83e-07)]_39 chr12:122335982-12233648 9.47e-02 30_[-1(8.44e-06)]_54 chr6:125956541-125957041 1.30e-01 21_[+1(2.47e-05)]_38_[-4(8.14e-05)]_\ 3 chr7:100559691-100560191 3.71e-01 54_[+1(9.74e-05)]_30 chr5:149656520-149657020 6.45e-03 49_[-1(8.43e-07)]_35 chr19:39411829-39412329 7.17e-01 100 chr1:234612480-234612980 1.58e-01 100 chr5:172188521-172189021 4.87e-01 100 chr1:8525872-8526372 6.00e-01 100 chr1:225474924-225475424 2.56e-01 18_[-1(6.86e-06)]_66 chr19:48107254-48107754 6.70e-10 43_[-1(2.05e-05)]_[+9(1.62e-16)]_10 chr19:11381905-11382405 1.14e-03 71_[-8(4.03e-05)]_14 chr19:12669271-12669771 5.83e-01 100 chr19:54200661-54201161 4.00e-02 65_[+6(4.87e-05)]_19 chr11:10933924-10934424 6.42e-02 68_[-7(1.93e-05)]_10 chr6:112337123-112337623 4.13e-02 26_[-1(1.14e-05)]_58 chr9:33466528-33467028 1.08e-01 71_[+1(2.55e-06)]_13 chr9:129006671-129007171 9.44e-02 38_[+1(2.47e-05)]_46 chr12:53006496-53006996 4.17e-01 100 chr22:19144636-19145136 7.23e-02 25_[-1(2.00e-06)]_59 chr19:37595026-37595526 8.69e-03 4_[+2(4.85e-07)]_74 chr19:34218230-34218730 9.30e-03 [-5(7.37e-06)]_78 chr3:14791279-14791779 2.35e-01 18_[-1(3.24e-05)]_66 chr5:134527122-134527622 3.68e-01 100 chr16:11916112-11916612 2.98e-01 83_[+3(1.60e-05)]_1 chr4:4726002-4726502 6.25e-03 46_[-6(1.25e-06)]_38 chr5:69217704-69218204 8.52e-01 100 chr12:117155114-11715561 1.25e-01 100 chr1:53470084-53470584 4.29e-01 25_[-1(8.29e-05)]_37_[-6(5.05e-05)]_\ 6 chr17:61927562-61928062 2.13e-01 100 chr1:53125522-53126022 1.02e-02 40_[-6(3.59e-06)]_[+1(1.14e-05)]_28 chr10:117216577-11721707 2.69e-01 37_[-1(1.79e-06)]_47 chr19:34501449-34501949 3.42e-02 82_[+1(1.23e-06)]_2 chr5:95554962-95555462 2.33e-01 100 chr14:23006732-23007232 7.51e-01 100 chr10:125823100-12582360 1.14e-01 100 chr22:37933810-37934310 1.41e-01 68_[+1(3.24e-05)]_16 chr17:58631467-58631967 5.29e-03 100 chr1:24043484-24043984 3.98e-06 11_[-5(1.66e-06)]_67 chr1:229224144-229224644 1.76e-11 7_[-5(2.89e-09)]_19_[+2(1.49e-08)]_\ 10_[-8(6.43e-07)]_5 chr7:83267035-83267535 1.03e-01 100 chr7:133492144-133492644 3.79e-04 26_[-5(1.57e-07)]_52 chr5:141618973-141619473 5.27e-02 78_[+1(4.99e-07)]_6 chr1:155226592-155227092 9.58e-05 60_[-4(4.97e-09)]_18 chr11:65013705-65014205 7.17e-01 100 chr1:208021757-208022257 3.43e-14 71_[+2(5.04e-14)]_7 chr9:125746077-125746577 2.92e-01 100 chr14:23953791-23954291 1.02e-01 36_[+3(6.04e-05)]_48 chr15:64387530-64388030 4.11e-01 100 chr3:194672259-194672759 1.53e-01 100 chr11:57619268-57619768 1.04e-03 2_[-6(7.15e-05)]_19_[-1(1.04e-05)]_\ [+6(1.53e-07)]_31 chr12:48815124-48815624 1.51e-01 54_[+4(2.03e-05)]_24 chr8:37513938-37514438 1.25e-11 4_[+8(7.95e-08)]_9_[-2(3.11e-09)]_\ [+8(2.11e-05)]_13_[-2(2.07e-10)] chr1:43946282-43946782 9.04e-01 100 chr1:167714410-167714910 7.15e-01 100 chr10:23344240-23344740 5.24e-01 100 chr10:119139415-11913991 6.11e-02 24_[-1(3.58e-06)]_60 chr16:51813543-51814043 4.30e-05 56_[-7(5.40e-10)]_22 chr6:16850908-16851408 1.26e-03 12_[+3(4.48e-07)]_72 chr12:57771744-57772244 2.31e-01 5_[-4(1.67e-05)]_73 chr1:151809140-151809640 4.11e-09 44_[+3(8.90e-08)]_[+5(6.29e-11)]_18 chr17:42998043-42998543 8.97e-01 100 chr17:30340041-30340541 1.98e-01 54_[-1(1.54e-05)]_30 chr17:80196010-80196510 2.51e-02 53_[-1(5.72e-07)]_10_[+3(5.32e-05)]_\ 5 chr10:102399360-10239986 9.73e-01 100 chr9:136631247-136631747 4.10e-09 [+8(2.33e-05)]_1_[-2(2.00e-09)]_6_\ [+8(5.12e-06)]_16_[+8(3.92e-08)]_10 chr12:45615201-45615701 5.54e-08 2_[-4(1.94e-08)]_29_[-3(2.80e-07)]_\ 31 chr13:40770943-40771443 3.86e-01 100 chr6:110958527-110959027 7.48e-01 100 chr16:87635412-87635912 6.10e-03 52_[+1(6.17e-06)]_32 chr1:84620619-84621119 1.46e-01 24_[+1(2.26e-06)]_60 chr21:39313491-39313991 2.78e-01 100 chr19:40090484-40090984 2.21e-03 44_[-2(4.02e-07)]_34 chr1:226547648-226548148 1.11e-01 13_[-1(1.04e-05)]_71 chr12:51047722-51048222 7.37e-01 100 chr17:68511981-68512481 9.22e-01 100 chr10:22229221-22229721 8.29e-01 100 chr6:30672787-30673287 7.85e-01 100 chr1:224434755-224435255 9.61e-01 100 chr22:20564263-20564763 1.51e-01 50_[-1(1.40e-05)]_34 chr15:89893905-89894405 8.14e-01 100 chr19:36850923-36851423 1.65e-06 14_[+2(3.71e-08)]_28_[-8(3.10e-07)]_\ 21 chr17:82494539-82495039 8.52e-01 100 chr1:37690325-37690825 9.63e-01 100 chr2:70341141-70341641 6.79e-03 15_[-1(9.62e-07)]_69 chr10:93702411-93702911 2.68e-01 100 chr12:132828762-13282926 9.20e-01 100 chr5:134176556-134177056 5.51e-01 100 chr7:128360869-128361369 1.14e-20 7_[-4(5.04e-14)]_5_[-2(5.04e-14)]_\ [+8(9.53e-10)]_29 chr1:150487020-150487520 6.65e-01 100 chr22:38114427-38114927 2.72e-01 39_[-1(4.46e-06)]_45 chr5:60699727-60700227 2.17e-01 100 chr7:100673364-100673864 8.83e-01 100 chr17:76523028-76523528 1.03e-01 38_[-1(5.72e-07)]_46 chr1:15792010-15792510 9.52e-01 100 chr6:13795038-13795538 6.93e-03 34_[-1(1.79e-06)]_50 chr7:96414862-96415362 1.48e-02 46_[-1(5.55e-06)]_38 chr3:194326393-194326893 4.76e-11 4_[+5(5.03e-06)]_[-2(1.36e-10)]_15_\ [+5(9.89e-09)]_15 chr5:133460097-133460597 9.40e-04 43_[+1(4.50e-08)]_41 chr12:124914477-12491497 7.43e-01 100 chr22:23929977-23930477 2.63e-09 27_[-1(5.55e-06)]_[+9(9.79e-15)]_26 chr7:129054710-129055210 9.49e-01 100 chr17:41688763-41689263 8.74e-01 100 chr11:75451391-75451891 1.39e-02 54_[+1(6.02e-08)]_30 chr19:37371260-37371760 2.26e-13 15_[+2(3.11e-09)]_19_[-8(1.57e-06)]_\ 29 chr19:35740832-35741332 5.28e-01 100 chr2:96507950-96508450 5.12e-01 64_[+1(9.35e-06)]_20 chr17:80575280-80575780 1.19e-03 40_[+1(7.61e-06)]_25_[-8(5.12e-06)]_\ 4 chr11:118907279-11890777 6.71e-01 100 chr8:33513436-33513936 5.63e-02 100 chr1:29236763-29237263 2.31e-04 44_[-5(4.27e-05)]_8_[-8(6.89e-07)]_\ 11 chr16:31180006-31180506 5.86e-01 100 chr15:74546044-74546544 7.59e-01 100 chr12:27710660-27711160 7.72e-01 100 chr16:30021339-30021839 9.86e-01 100 chr1:148522616-148523116 2.89e-02 100 chr1:110407421-110407921 9.57e-01 100 chr1:201704132-201704632 4.03e-04 39_[+1(1.39e-07)]_45 chr19:58519587-58520087 3.03e-01 48_[+9(1.88e-06)]_21 chr12:6778717-6779217 2.86e-13 1_[-2(5.04e-14)]_77 chr16:30953564-30954064 9.62e-04 52_[-1(1.23e-06)]_32 chr5:40835037-40835537 7.27e-01 100 chr7:101138249-101138749 1.08e-01 100 chr7:81030421-81030921 1.51e-04 51_[+3(3.95e-10)]_33 chr22:41446804-41447304 6.37e-01 17_[+7(8.87e-05)]_61 chr14:68926132-68926632 2.23e-06 41_[+7(1.76e-08)]_2_[+1(3.58e-06)]_\ 19 chr1:161540033-161540533 4.02e-01 100 chr17:77542721-77543221 3.41e-01 100 chr1:87325947-87326447 1.89e-02 2_[-1(1.54e-05)]_82 chr12:112220521-11222102 2.52e-05 68_[+3(1.25e-07)]_16 chrX:54043960-54044460 9.40e-01 100 chr4:77075940-77076440 8.87e-01 100 chr10:5548725-5549225 4.21e-08 6_[+8(2.09e-07)]_5_[-2(1.53e-09)]_\ 52 chr1:85274841-85275341 9.79e-02 100 chr21:32612436-32612936 4.28e-02 100 chr22:20496157-20496657 2.28e-02 31_[-4(3.63e-09)]_25_[-4(6.02e-06)] chr10:43078819-43079319 1.38e-01 67_[+1(8.43e-07)]_17 chr3:13762871-13763371 1.18e-05 42_[+7(1.01e-11)]_36 chr19:34134444-34134944 4.46e-01 100 chr5:127313779-127314279 3.00e-03 62_[+1(2.50e-07)]_22 chr1:174799530-174800030 4.15e-01 100 chr2:218710718-218711218 1.90e-01 100 chr17:59209684-59210184 6.82e-01 100 chr2:172098495-172098995 3.11e-07 37_[-8(1.14e-05)]_13_[+2(1.49e-08)]_\ 13 chr1:235504681-235505181 7.81e-01 100 chr6:28898184-28898684 3.86e-06 26_[+3(2.42e-05)]_4_[-5(8.28e-09)]_\ 32 chr1:205122026-205122526 2.30e-02 18_[+2(2.75e-05)]_60 chr19:38976451-38976951 7.48e-01 100 chr19:43950895-43951395 1.96e-01 [+1(1.40e-05)]_84 chr17:32253015-32253515 1.35e-02 2_[-1(3.20e-06)]_20_[-9(4.53e-05)]_\ 31 chr8:28401272-28401772 1.90e-05 15_[+2(1.37e-08)]_21_[-8(7.53e-08)]_\ 4_[+2(9.68e-06)]_1 chr6:124479820-124480320 1.07e-02 26_[-3(4.07e-07)]_58 chr8:27592139-27592639 1.90e-01 50_[+1(2.55e-06)]_34 chr10:129707358-12970785 2.43e-03 29_[-3(1.68e-07)]_55 chr5:69521049-69521549 7.59e-02 38_[-5(6.86e-05)]_40 chr17:7052030-7052530 1.08e-01 100 chr12:98566769-98567269 1.08e-02 36_[-1(6.57e-07)]_48 chr1:228486523-228487023 9.53e-01 100 chr10:97497860-97498360 2.94e-02 5_[+4(6.59e-05)]_27_[-7(8.58e-05)]_\ 24 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25_[+1(1.54e-05)]_59 chr6:124487902-124488402 1.83e-02 4_[+3(1.57e-06)]_42_[+3(1.78e-05)]_\ 22 chr1:40257855-40258355 8.66e-02 100 chr12:53675998-53676498 3.88e-01 34_[+1(6.48e-05)]_50 chr6:166951279-166951779 5.31e-13 34_[-9(3.26e-18)]_[+1(1.79e-06)]_19 chr15:82530629-82531129 3.58e-01 100 chr16:29943785-29944285 1.17e-01 22_[+4(3.05e-05)]_29_[+4(8.34e-05)]_\ 5 chr19:34677010-34677510 6.17e-01 100 chr9:128035085-128035585 3.44e-02 69_[+1(5.55e-06)]_15 chr8:28072701-28073201 4.96e-02 28_[-1(4.98e-06)]_56 chrX:41333454-41333954 1.61e-07 59_[+5(2.57e-10)]_19 chr17:32936835-32937335 1.12e-02 64_[+1(4.98e-06)]_20 chr3:47837645-47838145 2.20e-04 16_[-1(1.02e-07)]_48_[-3(4.01e-06)]_\ 4 chr17:81253429-81253929 9.69e-01 100 chr2:113198977-113199477 8.97e-01 100 chr2:27370148-27370648 4.04e-01 100 chr1:53185615-53186115 2.72e-11 45_[-9(6.84e-18)]_[+1(8.44e-06)]_8 chr13:27481736-27482236 2.39e-03 17_[-1(2.05e-05)]_[+6(2.54e-08)]_51 chrX:153539435-153539935 1.22e-02 26_[-1(7.46e-07)]_58 chr16:30957587-30958087 6.76e-01 100 chr5:90558362-90558862 9.76e-01 100 chr12:2812701-2813201 1.82e-01 100 chr19:36849702-36850202 6.57e-05 14_[-9(2.21e-05)]_17_[+8(1.40e-05)]_\ 23 chr12:51341295-51341795 7.79e-04 76_[+1(4.46e-06)]_8 chr15:71532904-71533404 4.83e-03 70_[+3(1.14e-06)]_14 chr16:75233851-75234351 2.57e-10 [+8(1.41e-08)]_11_[+8(1.17e-06)]_5_\ [-2(1.66e-11)]_4_[-2(1.01e-07)]_6 chr14:74905603-74906103 9.24e-03 46_[+1(7.51e-09)]_38 chr16:50671597-50672097 3.26e-04 42_[-1(1.50e-08)]_42 chr12:57111956-57112456 3.09e-15 1_[-2(7.08e-13)]_42_[-2(5.04e-14)]_\ 13 chr17:18625549-18626049 1.67e-03 23_[-1(8.82e-08)]_32_[-1(7.46e-07)]_\ 13 chr12:124469106-12446960 1.83e-03 68_[+1(1.28e-08)]_16 chr15:66862763-66863263 1.88e-03 8_[-4(9.23e-06)]_14_[+1(2.26e-06)]_\ 40 chr11:46521132-46521632 4.38e-01 100 chr1:92831912-92832412 6.81e-02 52_[+9(4.73e-06)]_17 chr1:167270154-167270654 4.36e-05 22_[-3(2.07e-07)]_62 chr1:201895875-201896375 3.44e-01 100 chrX:68462578-68463078 3.45e-10 5_[+5(7.82e-13)]_56_[+1(1.10e-06)]_\ 1 chr22:41597190-41597690 1.03e-01 66_[+1(3.20e-06)]_18 chr19:41310149-41310649 6.42e-01 100 chr19:37594307-37594807 4.02e-02 18_[-9(9.65e-05)]_3_[-2(3.00e-05)]_\ 26 chr1:44213127-44213627 8.00e-01 100 chr8:42412301-42412801 1.03e-03 16_[-1(1.02e-07)]_68 chr5:61357695-61358195 2.74e-05 34_[+7(2.83e-09)]_2_[+1(4.46e-06)]_\ 26 chr19:36489043-36489543 2.11e-05 18_[-2(6.63e-08)]_60 chr2:231410177-231410677 3.88e-03 8_[+6(2.08e-06)]_76 chr16:86019365-86019865 1.23e-03 24_[-1(1.86e-05)]_[+6(1.26e-07)]_44 chrUn_KI270467v1:2767-32 1.18e-01 4_[-5(2.72e-05)]_20_[-5(1.42e-05)]_\ 32 chr3:150242131-150242631 8.06e-03 35_[+3(1.56e-08)]_49 chr1:228457419-228457919 9.36e-01 100 chr16:25233632-25234132 6.64e-02 62_[-1(1.79e-06)]_22 chr8:41430035-41430535 6.17e-07 27_[-1(1.10e-09)]_57 chr10:93126406-93126906 4.88e-06 33_[-1(6.48e-05)]_2_[-7(2.06e-09)]_\ 27 chr12:82685628-82686128 1.18e-03 1_[-6(1.27e-05)]_17_[-1(2.50e-07)]_\ 50 chr1:54047548-54048048 2.79e-13 46_[-2(4.02e-09)]_32 chr4:1167117-1167617 8.26e-01 100 chr6:27251651-27252151 3.78e-01 29_[-1(2.25e-05)]_55 chr12:53159296-53159796 9.26e-02 13_[+4(7.77e-05)]_65 chr19:36837960-36838460 3.97e-03 14_[-4(7.77e-05)]_64 chr7:2028659-2029159 2.23e-03 41_[+7(5.78e-07)]_37 chr1:41444206-41444706 9.10e-06 28_[-1(2.55e-06)]_[+6(1.70e-07)]_40 chr16:89565474-89565974 1.48e-01 100 chr6:27078773-27079273 5.37e-01 100 chr20:64145405-64145905 3.33e-07 [-9(6.47e-06)]_11_[-6(1.03e-07)]_\ [+1(1.62e-07)]_26 chr16:29848412-29848912 8.32e-03 72_[+1(3.77e-09)]_12 chr7:150359954-150360454 1.39e-09 18_[-2(1.49e-08)]_2_[+5(1.18e-08)]_\ 15_[+8(5.40e-09)]_6 chr22:42779988-42780488 5.87e-03 73_[-1(6.02e-08)]_11 chr20:38242799-38243299 1.26e-05 30_[-6(1.91e-08)]_[+1(9.62e-07)]_38 chr10:71956060-71956560 3.19e-11 1_[-1(8.44e-06)]_[+9(4.41e-17)]_52 chr22:50241057-50241557 8.48e-11 18_[-1(8.44e-06)]_[+9(1.44e-15)]_35 chr19:5515655-5516155 5.14e-07 45_[-1(1.82e-07)]_[+6(6.00e-08)]_23 chr5:159331335-159331835 9.59e-01 100 chr3:187186700-187187200 6.24e-05 44_[-3(1.18e-08)]_40 chr11:20387050-20387550 7.27e-01 100 chr19:36916322-36916822 4.05e-01 100 chr2:27663545-27664045 5.90e-01 100 chr19:35947343-35947843 1.12e-13 55_[+2(5.04e-14)]_[+2(2.28e-10)]_1 chr22:43060151-43060651 2.95e-02 54_[+1(5.55e-06)]_30 chr6:35294286-35294786 1.71e-03 31_[-1(6.86e-06)]_3_[-2(5.35e-05)]_\ 28 chr1:91819307-91819807 3.13e-04 52_[+3(4.48e-07)]_32 chr19:37655841-37656341 2.10e-01 34_[-5(2.99e-05)]_44 chr3:128680696-128681196 9.03e-01 100 chr13:97141560-97142060 4.55e-05 65_[-3(2.07e-07)]_19 chr15:67720625-67721125 2.61e-02 70_[-3(5.83e-07)]_14 chr19:36572896-36573396 1.61e-03 [+8(8.74e-07)]_85 chr13:112942669-11294316 2.67e-03 17_[-1(2.50e-07)]_67 chr19:35901748-35902248 5.48e-03 6_[-3(9.71e-07)]_78 chr22:20885442-20885942 2.54e-02 20_[-1(3.20e-06)]_64 chr8:74171321-74171821 6.95e-11 9_[-7(3.41e-07)]_8_[-6(2.13e-10)]_\ [+1(9.62e-07)]_29 chr1:155244579-155245079 3.81e-05 4_[+4(5.83e-08)]_44_[+4(5.04e-14)]_\ 8 chr15:65610900-65611400 9.92e-01 100 chr10:96229449-96229949 7.44e-18 5_[+2(5.04e-14)]_[+2(6.64e-10)]_13_\ [-1(2.50e-07)]_22 chr17:38333650-38334150 9.67e-01 100 chr17:40113050-40113550 6.66e-02 30_[-1(4.01e-06)]_54 chr15:63610104-63610604 5.34e-04 20_[-1(8.82e-08)]_64 chr12:30599467-30599967 3.80e-03 19_[+3(3.07e-07)]_65 chr10:122053984-12205448 1.60e-04 29_[-1(1.82e-07)]_4_[-7(5.76e-06)]_\ 29 chr1:203861228-203861728 4.70e-03 5_[-1(2.63e-08)]_79 chr13:44876844-44877344 1.75e-04 52_[-6(2.52e-07)]_[+1(4.40e-07)]_16 chr5:134039384-134039884 3.31e-13 [+10(5.59e-19)]_29_[+1(5.72e-07)]_\ 24 chr9:126009012-126009512 3.06e-07 28_[-6(3.63e-08)]_[+1(8.44e-06)]_40 chr17:36148868-36149368 7.68e-02 62_[+1(3.58e-06)]_22 chr12:12266939-12267439 4.72e-02 81_[-1(2.71e-05)]_3 chr1:234486893-234487393 2.33e-02 40_[-1(2.96e-05)]_44 chr19:36604746-36605246 1.53e-10 24_[-2(7.98e-10)]_54 chr17:82153796-82154296 2.79e-03 30_[+3(6.56e-05)]_5_[+1(5.55e-06)]_\ 33 chr16:30874931-30875431 4.60e-01 100 chr6:33123665-33124165 4.29e-04 24_[-1(3.04e-08)]_60 chr5:177390449-177390949 2.30e-03 23_[-1(1.50e-08)]_61 chr10:102422614-10242311 1.28e-01 35_[+1(2.55e-06)]_49 chr12:10674060-10674560 4.51e-02 67_[+1(6.86e-06)]_17 chr21:45645713-45646213 6.00e-03 30_[-3(1.14e-06)]_54 chr1:37989848-37990348 2.78e-02 100 chr6:127266335-127266835 1.94e-03 15_[+1(5.37e-08)]_69 chr6:18823734-18824234 4.21e-07 33_[-6(1.26e-07)]_[+1(8.82e-08)]_35 chr9:36991483-36991983 6.59e-08 43_[+7(3.99e-11)]_2_[+1(4.99e-07)]_\ 17 chr15:68559575-68560075 6.33e-02 58_[-2(3.38e-06)]_20 chr4:7238256-7238756 1.36e-07 32_[-1(2.26e-06)]_2_[-7(3.47e-11)]_\ 28 chr20:2387148-2387648 2.77e-07 16_[-6(3.73e-05)]_7_[-1(1.40e-06)]_\ [+6(2.13e-10)]_29 chr5:1594384-1594884 1.50e-01 40_[-1(1.86e-05)]_44 chr6:131923340-131923840 5.64e-07 13_[-1(1.50e-08)]_[+6(5.13e-07)]_55 chr12:31271769-31272269 8.10e-05 29_[+3(3.05e-09)]_55 chr20:48620439-48620939 5.14e-04 12_[+1(7.11e-09)]_72 chr1:155050381-155050881 1.43e-02 32_[+1(1.39e-07)]_52 chr7:116698898-116699398 2.57e-04 30_[-3(2.53e-07)]_21_[+4(4.59e-05)]_\ 11 chr20:35619442-35619942 4.28e-01 100 chr7:151018058-151018558 7.42e-02 53_[+1(2.85e-06)]_31 chr14:100377743-10037824 6.39e-02 70_[+1(9.35e-06)]_14 chr17:18166850-18167350 1.81e-04 38_[-1(2.85e-06)]_[+6(9.20e-07)]_30 chr6:149026425-149026925 6.49e-04 23_[+7(2.97e-08)]_2_[+1(7.04e-05)]_\ 37 chr16:30598103-30598603 3.49e-01 100 chr12:7995082-7995582 2.27e-09 1_[+5(5.46e-10)]_19_[+3(4.89e-07)]_\ 2_[-4(3.38e-05)]_18 chr19:44259495-44259995 1.77e-11 58_[+10(5.59e-19)]_11 chr16:8567641-8568141 1.66e-01 100 chr16:4624159-4624659 1.61e-01 31_[+1(3.24e-05)]_53 chr9:129131632-129132132 2.76e-04 20_[-1(3.04e-08)]_64 chr5:149775743-149776243 1.09e-05 17_[+7(2.50e-08)]_2_[+1(8.44e-06)]_\ 43 chr1:209747714-209748214 8.88e-01 100 chr5:141877102-141877602 8.62e-10 3_[-8(9.38e-07)]_24_[+2(8.79e-08)]_\ 36 chr8:101756197-101756697 2.97e-05 20_[+4(5.72e-05)]_7_[-6(2.08e-06)]_\ [+1(2.47e-05)]_19 chrX:73943974-73944474 5.59e-01 100 chr10:72274689-72275189 2.05e-01 22_[-1(2.26e-06)]_62 chr14:92973180-92973680 1.09e-02 28_[-1(4.01e-06)]_2_[-7(2.27e-05)]_\ 32 chr16:67928405-67928905 1.35e-05 45_[+1(2.55e-06)]_39 chr1:201435687-201436187 3.52e-22 3_[-8(3.85e-09)]_10_[+2(5.04e-14)]_\ 1_[-8(2.81e-05)]_[+4(1.96e-12)]_12 chr1:114346404-114346904 9.12e-01 100 chr17:1574359-1574859 6.13e-02 52_[-1(7.46e-07)]_32 chr1:225777399-225777899 3.13e-01 53_[-1(1.54e-05)]_31 chr1:234723932-234724432 7.55e-04 [+4(3.18e-06)]_3_[+4(1.38e-09)]_53 chr1:53541653-53542153 7.54e-02 100 chr5:1644813-1645313 6.07e-02 41_[+1(8.82e-08)]_43 chr7:101244130-101244630 2.43e-01 40_[+1(5.55e-06)]_44 chr5:112160560-112161060 5.87e-01 100 chr1:7975207-7975707 8.92e-03 38_[-1(7.46e-07)]_46 chr19:40634435-40634935 2.81e-01 12_[+1(4.46e-06)]_29_[+1(1.62e-07)]_\ 27 chr1:1375028-1375528 5.45e-01 29_[+1(1.86e-05)]_55 chr9:14326238-14326738 1.51e-03 42_[+3(1.57e-06)]_42 chr1:109493820-109494320 7.74e-01 100 chr10:101602731-10160323 2.35e-01 26_[-1(5.03e-05)]_58 chr12:111304504-11130500 8.93e-08 31_[-1(7.11e-09)]_[+6(8.44e-07)]_37 chr1:156659868-156660368 1.67e-02 39_[-1(2.13e-07)]_45 chr17:38444050-38444550 1.53e-02 25_[-1(2.13e-07)]_59 chr15:89358592-89359092 7.42e-01 36_[+1(2.25e-05)]_48 chr6:37141754-37142254 2.35e-18 9_[+2(5.04e-14)]_69 chr19:38243749-38244249 1.23e-08 9_[+5(9.89e-09)]_9_[-1(1.71e-08)]_\ 44 chr16:14289664-14290164 6.29e-04 48_[+1(8.82e-08)]_36 chr1:212665216-212665716 8.80e-01 100 chr2:219541576-219542076 8.66e-01 100 chr19:36114140-36114640 1.90e-04 18_[-3(6.29e-08)]_9_[-10(9.17e-05)]_\ 26 chr5:143013956-143014456 5.17e-05 37_[-1(6.57e-07)]_47 chr5:173592012-173592512 2.67e-10 11_[-4(7.77e-05)]_[-1(1.28e-08)]_\ [+6(3.74e-09)]_35 chr20:53609865-53610365 2.07e-02 26_[-3(3.49e-06)]_58 chr20:38337622-38338122 4.25e-03 42_[-1(4.40e-07)]_42 chr20:33947635-33948135 6.46e-07 26_[-1(2.50e-07)]_[+6(6.00e-08)]_42 chr14:100154950-10015545 9.99e-05 21_[+7(5.45e-05)]_2_[+1(1.40e-06)]_\ 39 chr19:970610-971110 3.74e-08 13_[-1(4.92e-10)]_2_[-7(3.82e-08)]_\ 13_[-3(9.38e-05)]_18 chr1:20361744-20362244 2.56e-03 33_[-1(8.43e-07)]_4_[-6(8.72e-05)]_\ 31 chr12:54032549-54033049 2.32e-05 46_[-4(6.02e-06)]_5_[-4(2.52e-11)]_\ 5 chr12:132194005-13219450 1.02e-04 43_[-6(1.07e-06)]_[+1(4.40e-07)]_25 chr1:63523113-63523613 2.43e-01 100 chr19:5534862-5535362 5.65e-07 36_[+7(3.78e-10)]_2_[+1(2.50e-07)]_\ 24 chr6:43321868-43322368 8.77e-03 19_[+3(1.97e-06)]_65 chr18:50819775-50820275 4.55e-04 54_[+3(5.04e-08)]_30 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: surya ********************************************************************************