# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:09:39 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:09:39 PDT 2018)
#        host: surya
#        when: Thu May 10 17:55:58 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.207 C 0.291 G 0.291 T 0.211


MOTIF AGRKGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGRKGGCG   CGCCMYCT         91          9   8.0e-020   2.6e-015
#         AGGTGGCG   CGCCACCT         32          3   1.5e-007   4.7e-003
#         AGGGGGCG   CGCCCCCT         22          0   2.0e-007   6.2e-003
#         AGAGGGCG   CGCCCTCT         25          5   1.4e-004   4.4e+000
#         AGATGGCG   CGCCATCT         13          1   8.7e-004   2.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 92 E= 2.6e-015
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.413043 0.000000 0.586957 0.000000
0.000000 0.000000 0.510870 0.489130
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACAGCGMC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCGMC   GKCGCTGT         40          0   4.6e-013   1.5e-008
#         ACAGCGAC   GTCGCTGT         20          0   8.1e-007   2.6e-002
#         ACAGCGCC   GGCGCTGT         20          0   8.1e-007   2.6e-002

letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.5e-008
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.500000 0.500000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCACHAGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACHAGG   CCTDGTGG         50         10   4.0e-008   1.3e-003
#         CCACCAGG   CCTGGTGG         22          5   6.7e-004   2.1e+001
#         CCACAAGG   CCTTGTGG         18          4   2.0e-003   6.3e+001
#         CCACTAGG   CCTAGTGG         10          1   5.7e-003   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.3e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.346154 0.442308 0.000000 0.211538
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GGAAR DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGAAR      YTTCC        291        203   1.6e-007   5.0e-003
#            GGAAG      CTTCC        201        135   1.4e-005   4.4e-001
#            GGAAA      TTTCC        137         87   1.4e-004   4.3e+000

letter-probability matrix: alength= 4 w= 5 nsites= 410 E= 5.0e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.397561 0.000000 0.602439 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 18.89 seconds