# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF19.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF19.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF19.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF19.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:11:04 PST 2017) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF19.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:11:04 PST 2017) # host: indra # when: Mon Dec 18 16:25:44 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.336 C 0.168 G 0.172 T 0.323 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 337 66 1.4e-065 3.8e-061 # TAAATAAA TTTATTTA 337 66 1.4e-065 3.8e-061 letter-probability matrix: alength= 4 w= 8 nsites= 1595 E= 3.8e-061 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYRTCTC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CYRTCTC GAGAYRG 207 14 8.1e-054 2.2e-049 # CTGTCTC GAGACAG 104 7 1.9e-025 5.3e-021 # CCGTCTC GAGACGG 41 0 2.2e-013 6.2e-009 # CCATCTC GAGATGG 52 5 1.2e-011 3.4e-007 # CTATCTC GAGATAG 12 2 6.2e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 212 E= 2.2e-049 0.000000 1.000000 0.000000 0.000000 0.000000 0.438679 0.000000 0.561321 0.301887 0.000000 0.698113 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGYGARAC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGYGARAC GTYTCRCT 97 2 1.3e-028 3.6e-024 # AGTGAGAC GTCTCACT 42 1 2.5e-012 6.7e-008 # AGCGAGAC GTCTCGCT 32 1 2.7e-009 7.2e-005 # AGTGAAAC GTTTCACT 14 0 5.7e-005 1.5e+000 # AGCGAAAC GTTTCGCT 9 0 1.9e-003 5.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 3.6e-024 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.422680 0.000000 0.577320 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.237113 0.000000 0.762887 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGKC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTGKC GMCAG 226 96 9.7e-018 2.6e-013 # CTGTC GACAG 144 43 2.0e-016 5.4e-012 # CTGGC GCCAG 104 59 9.7e-005 2.6e+000 letter-probability matrix: alength= 4 w= 5 nsites= 273 E= 2.6e-013 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.439560 0.560440 0.000000 1.000000 0.000000 0.000000 MOTIF CCCAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCCAG CTGGG 146 53 2.0e-013 5.2e-009 # CCCAG CTGGG 146 53 2.0e-013 5.2e-009 letter-probability matrix: alength= 4 w= 5 nsites= 160 E= 5.2e-009 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGTYTTGC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGTYTTGC GCAARACT 39 1 2.0e-011 5.2e-007 # AGTCTTGC GCAAGACT 27 0 5.5e-009 1.4e-004 # AGTTTTGC GCAAAACT 12 1 1.6e-003 4.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 5.2e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.692308 0.000000 0.307692 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GAGAC GTCTC 84 30 5.6e-008 1.4e-003 # GAGAC GTCTC 84 30 5.6e-008 1.4e-003 letter-probability matrix: alength= 4 w= 5 nsites= 92 E= 1.4e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 36.68 seconds