# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:10:18 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:10:18 PST 2017)
#        host: kadru
#        when: Mon Dec 18 16:29:45 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.211 C 0.282 G 0.292 T 0.215


MOTIF CYSTTCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CYSTTCC    GGAASRG        419         60   4.2e-108   1.3e-103
#          CTGTTCC    GGAACAG        291         12   5.3e-090   1.6e-085
#          CCCTTCC    GGAAGGG        110         21   1.2e-017   3.7e-013
#          CTCTTCC    GGAAGAG         81         24   2.4e-009   7.4e-005
#          CCGTTCC    GGAACGG         36          5   2.6e-007   8.1e-003

letter-probability matrix: alength= 4 w= 7 nsites= 606 E= 1.3e-103
0.000000 1.000000 0.000000 0.000000
0.000000 0.265677 0.000000 0.734323
0.000000 0.346535 0.653465 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF DGGAAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      DGGAAC     GTTCCH        184         60   1.3e-019   3.8e-015
#           TGGAAC     GTTCCA         89         24   4.1e-011   1.2e-006
#           AGGAAC     GTTCCT         45         11   1.6e-006   4.9e-002
#           GGGAAC     GTTCCC         70         26   1.7e-006   5.0e-002

letter-probability matrix: alength= 4 w= 6 nsites= 215 E= 3.8e-015
0.223256 0.000000 0.334884 0.441860
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTTTGCAY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTTGCAY   RTGCAAAG         60          7   2.0e-012   5.8e-008
#         CTTTGCAC   GTGCAAAG         42          5   6.9e-009   2.0e-004
#         CTTTGCAT   ATGCAAAG         19          2   9.8e-005   2.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 5.8e-008
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.688525 0.000000 0.311475


MOTIF ATTCCAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ATTCCAG    CTGGAAT         46          4   1.1e-010   3.1e-006
#          ATTCCAG    CTGGAAT         46          4   1.1e-010   3.1e-006

letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 3.1e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTCWGAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCWGAGC   GCTCWGAG         42          3   2.3e-010   6.7e-006
#         CTCTGAGC   GCTCAGAG         32          2   2.4e-008   7.0e-004
#         CTCAGAGC   GCTCTGAG         14          2   2.0e-003   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 6.7e-006
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.272727 0.000000 0.000000 0.727273
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 40.37 seconds