# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:03:25 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF189.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:03:25 PDT 2018)
#        host: indra
#        when: Thu May 10 17:45:28 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.203 C 0.288 G 0.294 T 0.215


MOTIF CBSTTCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CBSTTCC    GGAASVG        457         99   7.2e-102   2.2e-097
#          CTGTTCC    GGAACAG        279         11   6.3e-086   1.9e-081
#          CCCTTCC    GGAAGGG        113         36   5.6e-012   1.7e-007
#          CTCTTCC    GGAAGAG         83         31   1.7e-007   5.3e-003
#          CGGTTCC    GGAACCG         47         10   2.1e-007   6.4e-003
#          CCGTTCC    GGAACGG         33         10   2.4e-004   7.5e+000
#          CGCTTCC    GGAAGCG         22          8   7.4e-003   2.3e+002

letter-probability matrix: alength= 4 w= 7 nsites= 667 E= 2.2e-097
0.000000 1.000000 0.000000 0.000000
0.000000 0.241379 0.104948 0.653673
0.000000 0.353823 0.646177 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCBGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCBGGAA    TTCCVGG        101         11   2.8e-021   8.4e-017
#          CCTGGAA    TTCCAGG         75          6   1.8e-017   5.3e-013
#          CCCGGAA    TTCCGGG         14          2   2.0e-003   5.9e+001
#          CCGGGAA    TTCCCGG         15          3   3.6e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 105 E= 8.4e-017
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.123810 0.142857 0.733333
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TRTGCAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TRTGCAAA   TTTGCAYA         48          2   4.6e-013   1.4e-008
#         TGTGCAAA   TTTGCACA         33          2   1.2e-008   3.6e-004
#         TATGCAAA   TTTGCATA         15          0   2.8e-005   8.3e-001

letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.4e-008
0.000000 0.000000 0.000000 1.000000
0.312500 0.000000 0.687500 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTCWGAGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCWGAGC   GCTCWGAG         41          3   4.4e-010   1.3e-005
#         CTCTGAGC   GCTCAGAG         30          1   1.1e-008   3.1e-004
#         CTCAGAGC   GCTCTGAG         14          3   6.1e-003   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.3e-005
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.279070 0.000000 0.000000 0.720930
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTGASTCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGASTCA   TGASTCAC         20          0   8.1e-007   2.4e-002
#         GTGAGTCA   TGACTCAC         11          0   4.7e-004   1.4e+001
#         GTGACTCA   TGAGTCAC          9          0   1.9e-003   5.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.4e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.450000 0.550000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 35.28 seconds