# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF184.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF184.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF184.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF184.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:02:09 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF184.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:02:09 PDT 2018) # host: surya # when: Thu May 10 17:40:22 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.282 C 0.212 G 0.212 T 0.293 MOTIF ASTGYTGG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ASTGYTGG CCARCAST 288 14 2.2e-086 6.3e-082 # AGTGTTGG CCAACACT 205 5 3.2e-063 9.1e-059 # AGTGCTGG CCAGCACT 63 2 1.2e-017 3.3e-013 # ACTGCTGG CCAGCAGT 29 2 1.7e-007 4.9e-003 # ACTGTTGG CCAACAGT 20 5 1.9e-003 5.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 317 E= 6.3e-082 1.000000 0.000000 0.000000 0.000000 0.000000 0.154574 0.845426 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.290221 0.000000 0.709779 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GWCTTTY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GWCTTTY RAAAGWC 223 27 1.1e-048 3.2e-044 # GTCTTTT AAAAGAC 123 8 1.4e-030 4.1e-026 # GACTTTT AAAAGTC 60 5 6.5e-014 1.9e-009 # GTCTTTC GAAAGAC 24 8 3.1e-003 8.9e+001 # GACTTTC GAAAGTC 20 7 8.9e-003 2.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 229 E= 3.2e-044 0.000000 0.000000 1.000000 0.000000 0.353712 0.000000 0.000000 0.646288 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.196507 0.000000 0.803493 MOTIF AGGATRTG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGGATRTG CAYATCCT 116 7 2.9e-029 8.3e-025 # AGGATGTG CACATCCT 81 4 4.0e-021 1.1e-016 # AGGATATG CATATCCT 35 3 2.2e-008 6.1e-004 letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 8.3e-025 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.301724 0.000000 0.698276 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TGKTATTR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TGKTATTR YAATAMCA 120 17 9.7e-023 2.7e-018 # TGTTATTA TAATAACA 41 2 5.7e-011 1.6e-006 # TGTTATTG CAATAACA 42 6 2.9e-008 8.2e-004 # TGGTATTG CAATACCA 23 7 2.3e-003 6.6e+001 # TGGTATTA TAATACCA 15 3 3.6e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 2.7e-018 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.314050 0.685950 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.462810 0.000000 0.537190 0.000000 MOTIF CWTTYTA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CWTTYTA TARAAWG 193 60 7.7e-022 2.2e-017 # CATTCTA TAGAATG 61 9 2.0e-011 5.5e-007 # CATTTTA TAAAATG 58 16 2.2e-007 6.2e-003 # CTTTCTA TAGAAAG 40 11 2.0e-005 5.6e-001 # CTTTTTA TAAAAAG 53 24 4.3e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 214 E= 2.2e-017 0.000000 1.000000 0.000000 0.000000 0.565421 0.000000 0.000000 0.434579 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.471963 0.000000 0.528037 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGRGTTCY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGRGTTCY RGAACYCT 81 9 6.3e-017 1.7e-012 # AGGGTTCC GGAACCCT 31 2 4.6e-008 1.3e-003 # AGAGTTCC GGAACTCT 26 4 2.4e-005 6.7e-001 # AGGGTTCT AGAACCCT 10 0 9.4e-004 2.6e+001 # AGAGTTCT AGAACTCT 14 3 6.1e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.7e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.493827 0.000000 0.506173 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.703704 0.000000 0.296296 MOTIF GAGAAATW DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GAGAAATW WATTTCTC 48 2 4.6e-013 1.3e-008 # GAGAAATT AATTTCTC 30 0 6.4e-010 1.8e-005 # GAGAAATA TATTTCTC 19 2 9.8e-005 2.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.3e-008 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.387755 0.000000 0.000000 0.612245 MOTIF ATTHTAG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATTHTAG CTADAAT 81 16 9.2e-013 2.5e-008 # ATTTTAG CTAAAAT 44 7 3.4e-008 9.2e-004 # ATTCTAG CTAGAAT 15 2 1.1e-003 3.0e+001 # ATTATAG CTATAAT 22 7 3.7e-003 1.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 82 E= 2.5e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.268293 0.182927 0.000000 0.548780 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TGACTCAB DREME-9 # Word RC Word Pos Neg P-value E-value # BEST TGACTCAB VTGAGTCA 42 3 2.3e-010 6.2e-006 # TGACTCAG CTGAGTCA 15 0 2.8e-005 7.6e-001 # TGACTCAT ATGAGTCA 20 2 5.3e-005 1.4e+000 # TGACTCAC GTGAGTCA 13 1 8.7e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 6.2e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.290909 0.345455 0.363636 MOTIF ATCYTCA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ATCYTCA TGARGAT 68 16 1.3e-009 3.5e-005 # ATCTTCA TGAAGAT 38 8 3.2e-006 8.5e-002 # ATCCTCA TGAGGAT 32 8 7.1e-005 1.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 72 E= 3.5e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.000000 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATTCCYA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CATTCCYA TRGGAATG 33 1 1.3e-009 3.6e-005 # CATTCCCA TGGGAATG 25 1 3.2e-007 8.6e-003 # CATTCCTA TAGGAATG 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.6e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.757576 0.000000 0.242424 1.000000 0.000000 0.000000 0.000000 MOTIF CCATMCTA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CCATMCTA TAGKATGG 31 1 5.3e-009 1.4e-004 # CCATCCTA TAGGATGG 20 1 9.1e-006 2.4e-001 # CCATACTA TAGTATGG 11 0 4.7e-004 1.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.354839 0.645161 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYTGGCWC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CYTGGCWC GWGCCARG 33 2 1.2e-008 3.3e-004 # CCTGGCAC GTGCCAGG 12 1 1.6e-003 4.4e+001 # CTTGGCAC GTGCCAAG 12 1 1.6e-003 4.4e+001 # CTTGGCTC GAGCCAAG 8 0 3.8e-003 1.0e+002 # CCTGGCTC GAGCCAGG 7 0 7.7e-003 2.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 3.3e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.487805 0.000000 0.512195 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.634146 0.000000 0.000000 0.365854 0.000000 1.000000 0.000000 0.000000 MOTIF GGTGTGAR DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GGTGTGAR YTCACACC 29 1 2.1e-008 5.6e-004 # GGTGTGAA TTCACACC 18 1 3.4e-005 9.1e-001 # GGTGTGAG CTCACACC 11 0 4.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.6e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.633333 0.000000 0.366667 0.000000 MOTIF TRGAGCAA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST TRGAGCAA TTGCTCYA 25 0 2.3e-008 6.2e-004 # TGGAGCAA TTGCTCCA 14 0 5.7e-005 1.5e+000 # TAGAGCAA TTGCTCTA 11 0 4.7e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 6.2e-004 0.000000 0.000000 0.000000 1.000000 0.440000 0.000000 0.560000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWCCAGCA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CWCCAGCA TGCTGGWG 48 9 3.9e-008 1.1e-003 # CACCAGCA TGCTGGTG 22 3 6.8e-005 1.8e+000 # CTCCAGCA TGCTGGAG 27 6 1.3e-004 3.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.1e-003 0.000000 1.000000 0.000000 0.000000 0.460000 0.000000 0.000000 0.540000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 60.87 seconds