# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF169.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF169.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF169.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF169.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:57:09 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF169.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:57:10 PDT 2018)
#        host: indra
#        when: Thu May 10 17:39:40 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.238 C 0.255 G 0.275 T 0.232


MOTIF TAYTGCAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAYTGCAA   TTGCARTA         26          0   1.1e-008   3.1e-004
#         TATTGCAA   TTGCAATA         16          0   1.4e-005   3.8e-001
#         TACTGCAA   TTGCAGTA         11          0   4.7e-004   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.1e-004
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.413793 0.000000 0.586207
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACCACCAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCACCAT   ATGGTGGT         23          1   1.2e-006   3.4e-002
#         ACCACCAT   ATGGTGGT         23          1   1.2e-006   3.4e-002

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATAAARTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAARTC   GAYTTTAT         19          0   1.7e-006   4.6e-002
#         ATAAAATC   GATTTTAT         11          0   4.7e-004   1.3e+001
#         ATAAAGTC   GACTTTAT          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.6e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.578947 0.000000 0.421053 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 15.64 seconds