# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:55:09 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF16.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:55:10 PDT 2018) # host: indra # when: Thu May 10 17:31:01 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.228 C 0.269 G 0.283 T 0.220 MOTIF GGGAGCYA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GGGAGCYA TRGCTCCC 455 22 1.0e-166 2.8e-162 # GGGAGCCA TGGCTCCC 401 18 4.6e-138 1.3e-133 # GGGAGCTA TAGCTCCC 57 4 7.2e-014 2.0e-009 letter-probability matrix: alength= 4 w= 8 nsites= 464 E= 2.8e-162 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 MOTIF RCCYTCCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RCCYTCCA TGGARGGY 110 14 8.3e-022 2.3e-017 # ACCCTCCA TGGAGGGT 40 5 2.3e-008 6.5e-004 # ACCTTCCA TGGAAGGT 30 3 5.2e-007 1.4e-002 # GCCTTCCA TGGAAGGC 14 0 5.7e-005 1.6e+000 # GCCCTCCA TGGAGGGC 27 6 1.3e-004 3.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 114 E= 2.3e-017 0.631579 0.000000 0.368421 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.596491 0.000000 0.403509 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF KTGAGCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST KTGAGCA TGCTCAM 139 30 9.1e-021 2.5e-016 # TTGAGCA TGCTCAA 95 18 2.7e-015 7.4e-011 # GTGAGCA TGCTCAC 47 13 3.7e-006 1.0e-001 letter-probability matrix: alength= 4 w= 7 nsites= 144 E= 2.5e-016 0.000000 0.000000 0.340278 0.659722 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AACCTKC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AACCTKC GMAGGTT 64 5 4.5e-015 1.2e-010 # AACCTTC GAAGGTT 32 1 2.7e-009 7.3e-005 # AACCTGC GCAGGTT 32 4 7.0e-007 1.9e-002 letter-probability matrix: alength= 4 w= 7 nsites= 65 E= 1.2e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.507692 0.492308 0.000000 1.000000 0.000000 0.000000 MOTIF AAAGYCCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAAGYCCA TGGRCTTT 55 5 1.8e-012 4.8e-008 # AAAGCCCA TGGGCTTT 42 5 6.9e-009 1.9e-004 # AAAGTCCA TGGACTTT 13 0 1.1e-004 3.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 4.8e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.763636 0.000000 0.236364 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AKTGCCY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AKTGCCY RGGCAMT 122 42 7.0e-012 1.9e-007 # ATTGCCC GGGCAAT 29 6 4.7e-005 1.3e+000 # AGTGCCC GGGCACT 43 17 4.0e-004 1.1e+001 # ATTGCCT AGGCAAT 24 8 3.1e-003 8.6e+001 # AGTGCCT AGGCACT 28 12 7.4e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 124 E= 1.9e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.572581 0.427419 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.580645 0.000000 0.419355 MOTIF GAGGRA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GAGGRA TYCCTC 238 134 5.2e-011 1.4e-006 # GAGGGA TCCCTC 173 91 6.7e-009 1.8e-004 # GAGGAA TTCCTC 94 50 6.1e-005 1.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 292 E= 1.4e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.332192 0.000000 0.667808 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCTCTAAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GCTCTAAA TTTAGAGC 25 1 3.2e-007 8.5e-003 # GCTCTAAA TTTAGAGC 25 1 3.2e-007 8.5e-003 letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 8.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGTSA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GAGTSA TSACTC 139 75 8.8e-007 2.4e-002 # GAGTCA TGACTC 73 37 2.1e-004 5.6e+000 # GAGTGA TCACTC 74 42 1.2e-003 3.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 151 E= 2.4e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.503311 0.496689 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 79.49 seconds