Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
AGCARTAYACCT 12 AGCAATATACCT
TTYASCTGGCARGG 14 TTCACCTGGCAAGG
TAAGGCCCACCAGAAGC 17 TAAGGCCCACCAGAAGC
TACCCCTGAGGTAGGACAGTRA 22 TACCCCTGAGGTAGGACAGTGA
CCTTTTTCTCCATTCCTGTCCA 22 CCTTTTTCTCCATTCCTGTCCA
ACCAGAAGCARTTTGC 16 ACCAGAAGCAATTTGC
TATCAACTCTCC 12 TATCAACTCTCC
RCTTTGTCATGGCAGCCCTAGCARACK 27 GCTTTGTCATGGCAGCCCTAGCAAACT
GGACAGGAATGG 12 GGACAGGAATGG
CTGAGGTARGACAGTR 16 CTGAGGTAGGACAGTA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.273 C 0.227 G 0.227 T 0.273


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 + 48635051 48635077 3.78e-15 6.62e-10 gctttgtcatggcagcccgagcagact
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 225605949 225605975 4.78e-15 6.62e-10 attttgtcatggcagccctagcaaact
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 7383470 7383496 4.78e-15 6.62e-10 ACTTTGTCATGACAGCCCTAGCAAACT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 + 89221061 89221087 5.06e-15 6.62e-10 gctttgtcatggcagccccagcaaagg
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 + 61094869 61094895 6.05e-15 6.62e-10 gcttggtcttggcagccctagcagact
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 7689396 7689422 7.01e-15 6.62e-10 ACTTTGTCATGGCAACCCTAGCAAACG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 44718228 44718254 1e-14 7.77e-10 ACTTTGACATGGCAGCCCTAGCAAACT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 15011151 15011177 1.1e-14 7.77e-10 GCTTTGTCGTGGCAGCCCTAGCAAACC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 - 90910075 90910101 2.34e-14 1.48e-09 GCTTTGTCTTGGCAGCCCTATCAGACT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 54178219 54178245 4.09e-14 2.32e-09 gttttgtcatggcagccctagcagtgt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 1377412 1377438 1.61e-13 8.29e-09 gctttgtcttggcagccatagcagatg
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 - 89119555 89119581 2.52e-13 1.19e-08 GCTTTGTCATGGCAGCCCTAGCCAACT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 11279720 11279746 2.85e-13 1.24e-08 gcttggtcatgacagccttagcaaact
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 - 38461078 38461104 1.14e-12 4.61e-08 ACATTGTCTTGGCAACCCTAGCAAATG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 - 72092340 72092366 2.54e-12 9.6e-08 ACTTTGTTACGGCAGCCCCAGCAATGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 124625014 124625040 3.57e-11 1.26e-06 GCTTTGTCACGGTGGCCCTGGCAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr18 - 13296302 13296328 5e-11 1.67e-06 ACTTTGTTAGGACAGCCCTAGCAGATT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr20 + 17537016 17537042 1.62e-10 5.09e-06 gctttgttctggaagccctagcaaacg
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 9981544 9981570 2.13e-08 0.000636 ACTTTGTCTTGGTAAGCACAGCAGTat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 + 11417424 11417450 2.29e-08 0.000649 actttgttgtggaagtcctagaaaact
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 - 42388012 42388038 3.52e-08 0.000948 GCTTGGTCCTGGCGGTCACATCAATGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 116541668 116541694 7.86e-08 0.00202 GCTTTGTCATGGAAACCACCACAATGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 43252742 43252768 1.1e-07 0.00271 GCTTTGACTTGGCAGTGACAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 + 118106683 118106709 1.15e-07 0.00271 GCTTGGTCTTGGCGACCCTTCCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 2261599 2261625 1.4e-07 0.00317 CCTTTGTCATGGCAGCGATAACAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 4602184 4602210 2.44e-07 0.00531 GCTTTGTCCTGGCAGGCCCAATAATGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 6681292 6681318 2.72e-07 0.00571 ATTTTGTTATTGCAGCCTGAGCTAATA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 48377789 48377815 4.13e-07 0.00836 gctttgacctggaagcattaacagagt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 2261599 2261625 8.44e-07 0.0165 ATATTGTTATCGCTGCCATGACAAAGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 52205802 52205828 9.87e-07 0.0186 ACTTGGTCTTGGAAGGCTTTGCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 - 44571700 44571726 1.02e-06 0.0186 GCTTTGCCTTGGTAGGGTAAGCAGATG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr14 - 104514339 104514365 1.06e-06 0.0188 GATTGGTCTTGGCAACCCCCACAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 81582726 81582752 1.18e-06 0.0194 TCATGGTCTTGGAAACCCAAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr4 - 7751152 7751178 1.19e-06 0.0194 GCTTTCACCTGGCAGGAATAGCAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 + 38997229 38997255 1.2e-06 0.0194 GTTCTGTCTTGATAACCACAGCTGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 + 89436296 89436322 1.37e-06 0.0215 cttttatcacagcagccacagaaaacc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr13 - 45384667 45384693 1.65e-06 0.0252 GCTTTCACATGGCAGGGACAGCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 58491578 58491604 1.83e-06 0.0273 CCGTGGTCTCGGCAACACCAACAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 440248 440274 2.18e-06 0.0316 GCTTGGTCTTGGTAAGGGCAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 11168764 11168790 2.7e-06 0.0383 GCATGGTCATGGTTGGCATAACAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 109252985 109253011 3.26e-06 0.0449 GCTTTGACACAACATGGTTAGCAATGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 44718228 44718254 3.33e-06 0.0449 agtttgctagggctgccatgtcaaagt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 - 133778506 133778532 4.08e-06 0.0536 GCTTTGACATGGTAGGCGATGCAGCGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr15 + 65286059 65286085 4.32e-06 0.0536 GCGTTGACATGAGGGTGTTAGCAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 18119627 18119653 4.34e-06 0.0536 GCATTGTCTAGGCAAAGACAACAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 122291385 122291411 4.39e-06 0.0536 GCTTTTACTTGGCAGGGGTAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 5218637 5218663 4.53e-06 0.0536 ACTTGGTCCTGGAAACCCTAGTCATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 204755748 204755774 4.54e-06 0.0536 tctgtgtcatggtagacccagtagggc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 36167880 36167906 5.49e-06 0.0619 GCTTTTAATTGGCAGACCCAACAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 7566432 7566458 5.55e-06 0.0619 GCCTTGACTTGGTAGGGCTAACACAGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 - 64812592 64812618 5.58e-06 0.0619 GCTTTCACCTGACAGAGCTAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr20 + 62145730 62145756 5.84e-06 0.0636 GACTTGGCTTGGTAGGGCCAGCAGTCT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 52205905 52205931 6.13e-06 0.0656 TCATTGCCAGGGAGGCCCCAGCTAAGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 3532566 3532592 6.35e-06 0.0666 ACGCTGACAGGACAACCACTGCAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr20 - 63632979 63633005 7.13e-06 0.0735 TCTTTTACATGACAGGACCAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 1563471 1563497 7.56e-06 0.0749 GCTTGGTCATGGTTGGGTCTTCAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 93999714 93999740 7.63e-06 0.0749 ATATTGAATTGCTAGCCATGACAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chrX - 9540218 9540244 7.67e-06 0.0749 TCTTTGTCTTGGTAACCCAACTAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr4 - 114980987 114981013 7.95e-06 0.076 GCTTTGACTCTTAAGCTCAAGCAATCC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 + 132211763 132211789 8.05e-06 0.076 gccttgccatagctaccatagctatgc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 1362144 1362170 8.18e-06 0.076 gtttcctcatggaagccatggctgggt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 244006527 244006553 8.52e-06 0.0779 ACTCTGTTCTGACAGGAATAGCAAAGA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 1612559 1612585 9.22e-06 0.0829 GGCTGGTGTTGGTGGGCACAGCAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 - 132211763 132211789 1.01e-05 0.088 GCATAGCTATGGTAGCTATGGCAAGGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 733299 733325 1.03e-05 0.088 GTGCTGTCATGGGAGACTCAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 + 34933780 34933806 1.03e-05 0.088 TCTGGGTCTGGGTGGCCTTGGAAATGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 + 23035049 23035075 1.04e-05 0.088 gctttcagttggcaaggccagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 40789237 40789263 1.06e-05 0.088 TCTGTGTCTTGGTGTACCCAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 116541668 116541694 1.13e-05 0.0931 acattgtggtggtttccatgacaaagc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 + 4565397 4565423 1.17e-05 0.0944 GTTTTTACCTGGTAGGGACAGCAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr13 - 34431318 34431344 1.2e-05 0.0955 ACTTTCACCTGAAAGGCATAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 7616874 7616900 1.21e-05 0.0955 GCATGGACTTGGGAGGGTGTGCAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 115920975 115921001 1.27e-05 0.0987 gcttgtttctggcaagcccaacagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 + 133774659 133774685 1.29e-05 0.0987 gctttcacatggccgggatggcagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 + 42388012 42388038 1.33e-05 0.1 ACATTGATGTGACCGCCAGGACCAAGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 - 168445859 168445885 1.36e-05 0.101 GCATGGTCTTGTTAGGGACTGCAATTG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr18 - 64535736 64535762 1.37e-05 0.101 GCCTTCATCTGGCAAGGCTAGCAATGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 + 1366939 1366965 1.39e-05 0.101 GCATTTACATGGCAACCCCTCCAACAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 - 150331536 150331562 1.46e-05 0.104 GCTTTCAGCTGGCAAGGCCAGCAATGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 1362063 1362089 1.47e-05 0.104 ACTTTCACCTGGCAGGGACAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 112686237 112686263 1.49e-05 0.104 TCTTGATCCTTGCAGCCCTTTCAGACA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 19107878 19107904 1.54e-05 0.106 GCTCTGTCCTGGCAGGTACAGCAACAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 + 1366872 1366898 1.68e-05 0.113 ACATTTACATGGCAACCCCTCCAACAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 + 1367006 1367032 1.68e-05 0.113 ACATTTACATGGCAACCCCTCCAACAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 228128655 228128681 1.7e-05 0.113 gctttcacttgggaaggccaacagtgt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr22 - 23188457 23188483 1.83e-05 0.121 TCTTTGTCCTGGTGAGGTTAGCAGTCA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 108065481 108065507 1.87e-05 0.122 GCTTTTACCTGGCAGGGACAGTAATGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr4 - 2753647 2753673 1.91e-05 0.123 GCAGGGACCTCACAACCAGAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr3 + 133489797 133489823 1.95e-05 0.124 gccctgttgtggcagggacagcagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr15 + 68880573 68880599 2.05e-05 0.129 gctttcacatggcaggggctgcagaat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 70524526 70524552 2.25e-05 0.139 gctttcacctgacaacaccagtggtcc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 214881131 214881157 2.26e-05 0.139 ACTTTTACAGGGCAAGGACAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 440402 440428 2.37e-05 0.143 TCTGGGATACTGGGGCCCTAGCTGACT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 + 15011151 15011177 2.39e-05 0.143 ggtttgctagggctgccacgacaaagc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 + 62356594 62356620 2.41e-05 0.143 gctttcatctggcaaggccagcaatac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 - 67298663 67298689 2.44e-05 0.144 GCATTTACATGGCAGGGACAACAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 - 89221061 89221087 2.49e-05 0.146 CCTTTGCTGGGGCTGCCATGACAAAGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 + 79136187 79136213 2.64e-05 0.153 GCTCAGCCCTGACAGCCCCCGCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 - 43760405 43760431 2.69e-05 0.154 GTCTGGTCATGAGAGGGTTAACAGTCC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr22 + 22765495 22765521 2.86e-05 0.162 actgtgcacctgcagccatagcattct
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 - 85652244 85652270 2.93e-05 0.164 GCTTTTACCTGGCAGGGCCAACAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 + 89119555 89119581 2.95e-05 0.164 agttggctagggctgccatgacaaagc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 90175861 90175887 3.05e-05 0.168 CTTTTGTCACCTCAGCCCCCTCCATTC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 129631393 129631419 3.09e-05 0.168 GCTTTCAGTTGGAAGGGTCAGCAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chrX + 134095553 134095579 3.12e-05 0.169 gctttcagctggcaaggctagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 11168764 11168790 3.29e-05 0.176 atactgttatgccaaccatgaccatgc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 440011 440037 3.57e-05 0.189 TCCTTGAGATGGCTGCCCCTGGAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 75579803 75579829 3.63e-05 0.189 tctttctgttggcagggatagcagtac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 10688223 10688249 3.64e-05 0.189 GCTTTCACCTGGCAATGCCATTAATGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 69172895 69172921 3.73e-05 0.192 gcacaggcagggcagggTTAGCAAACC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 1495002 1495028 3.87e-05 0.196 GCAGTGTCCCGGCAAGGACTGCAGTGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 8040049 8040075 3.9e-05 0.196 ACTTGGCTTGGCTACCCTGATCAAATC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 - 30057853 30057879 3.96e-05 0.196 GCTTTCAGCTGGCAGGGCCAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chrX + 16435562 16435588 3.99e-05 0.196 gcttttacctagcagggatagcagaac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr20 - 5490472 5490498 4e-05 0.196 GCTGTGACCTGGTAGTGCTAACAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 42866739 42866765 4.02e-05 0.196 gccttcaattggcagggccagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 1495043 1495069 4.05e-05 0.196 CTTTGATCACAGCAACCTCTGAAAACC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 - 29936905 29936931 4.15e-05 0.199 GGTTTTACTTGGCAGGGCCAACAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 130698817 130698843 4.38e-05 0.206 GTATTGTTGTCCCTGCCAGATGAAAGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chrX + 2720095 2720121 4.39e-05 0.206 acctttttattttggccctagaaattc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 78325872 78325898 4.39e-05 0.206 aaagtgtattgatagccctgccaactg
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 241453916 241453942 4.7e-05 0.213 GCTTTTAGTTGGCAAGGCCAGCAACAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr4 - 155741854 155741880 4.73e-05 0.213 GATGTGGTTTGATTGCTTGAGCAAACT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 + 3267633 3267659 4.77e-05 0.213 gctgttgcctggcaaggccagcagtgc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 149445754 149445780 4.79e-05 0.213 TCTCGAACATTGCAACCCCAGCCAACA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 + 175905442 175905468 4.81e-05 0.213 gctctgtcatgaccatccaaaaagatc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 177933741 177933767 4.81e-05 0.213 GCTCTGTCATGACCATCCAAAAAGATC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 81370049 81370075 4.82e-05 0.213 AACTGCTTCTGGTGACCCTTGCAAATT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 + 82062491 82062517 4.86e-05 0.214 actttgagaggccaaggtgagcagatc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 - 44571871 44571897 5.02e-05 0.215 AGATTGTCTTGAGAACCAAATGAGCCT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr18 + 11130399 11130425 5.12e-05 0.215 gctttcagctggcaaggccagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 + 36113305 36113331 5.12e-05 0.215 gctttcaactggcaaggccagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 64132860 64132886 5.12e-05 0.215 GCTTTCAGCTGGCAAGGCCAGCAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 - 90701607 90701633 5.12e-05 0.215 GCTTTTAGCTGGCAAGACCAGCAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 - 213472191 213472217 5.12e-05 0.215 GCTTTCAACTGGCAAGGCCAGCAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 119967191 119967217 5.2e-05 0.216 ATTTTGATATAACAGGCTTGTTTAATT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr13 + 100338387 100338413 5.38e-05 0.218 ccttggatctgggaacctctgcagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 74016147 74016173 5.39e-05 0.218 GCTTATACTTGGCATGGATAGCAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr9 + 136513044 136513070 5.4e-05 0.218 ACTTGTACCCGGCAACGTCGTCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 49828582 49828608 5.45e-05 0.218 GTTTGGTCTCCCCAAGTCCCTCAAAGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 + 149445748 149445774 5.45e-05 0.218 gcatggtgttggctggggttgcaatgt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 + 72280887 72280913 5.47e-05 0.218 GGTTTGTGGCTGTAAGCTTAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr3 + 73632782 73632808 5.54e-05 0.218 GATTTGACATGTGAAACCCTGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 + 106821002 106821028 5.57e-05 0.218 gctttcatctggcaaggtcagcaatac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 + 72092340 72092366 5.59e-05 0.218 CCAttgctggggctgccgtaacaaagt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 - 30727786 30727812 5.62e-05 0.218 GCAGGGTTCTGGTAAGGAGAGCAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 + 92061687 92061713 5.66e-05 0.218 gccttcagatggcaaggccagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 + 46094812 46094838 5.74e-05 0.218 acgatgatacgtctgacacagcagatg
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 - 50580224 50580250 5.74e-05 0.218 ATGGTGTCATGACAACACTCCCTAAGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 - 146451348 146451374 5.82e-05 0.22 GCTTCCTCCTGGTAGAGATAGCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 71574606 71574632 5.94e-05 0.221 gcattcacctggcaggagcagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 225605949 225605975 5.96e-05 0.221 AGTTTGCTAGGGCTGCCATGACAAAAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 117778997 117779023 5.97e-05 0.221 ATTATAAAGGGACAGCTTTAGCAAATG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 - 15498479 15498505 6.02e-05 0.221 GTTTCCAAATGGGAAACCTTGCAGAGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 - 33864331 33864357 6.08e-05 0.222 GCTTATACACGGTAAGGACAGCAAGGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 7171301 7171327 6.33e-05 0.23 ATATTGTTTAGACCACCTTCTCAAGTC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 38328600 38328626 6.55e-05 0.232 GCATGGTGTTGGCAGTACCTCCAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr18 + 10095547 10095573 6.58e-05 0.232 gtcttcagttggcagggctagcaatac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 34851546 34851572 6.58e-05 0.232 ACTTTCTCACAAAAAGCCTGTCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 48378000 48378026 6.58e-05 0.232 TTATTGAGATGGAAGGCATATGAAATT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chrX + 2720013 2720039 6.59e-05 0.232 ggtttggcatgggaaccatactggttt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 + 50580233 50580259 6.7e-05 0.234 GTGTTGTCATGACACCATGATGGATCC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr18 + 47434490 47434516 6.76e-05 0.235 gctttcacctggcaaggattgcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr21 - 35963110 35963136 6.86e-05 0.235 GCCTTTCCGTGGCAAGGATAGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr4 + 7751180 7751206 6.87e-05 0.235 acttgcttatggtgtccttactaatag
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 + 133964015 133964041 6.89e-05 0.235 tctttcagttggcaatgccagcaatat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 25727906 25727932 6.93e-05 0.235 ACTGTGTTATCAAAGCCTTGTCATGTG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 44705626 44705652 7.23e-05 0.242 ACTTTGATGGTGCAGCCTGTGCGGGTG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 - 39060839 39060865 7.32e-05 0.242 GCTTTCAGCTGGCAAGGCCAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 53643420 53643446 7.32e-05 0.242 gcttttagctggcaaggccagcaatac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 122974449 122974475 7.32e-05 0.242 GCTTTCAGCTGGCAAGGCCAGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 + 85419194 85419220 7.38e-05 0.243 CCTTAGTCTCTGCAGGGACAGCAGTGA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 78325877 78325903 7.63e-05 0.248 TCTTTCAGTTGGCAGGGCTATCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr8 + 142900159 142900185 7.63e-05 0.248 gcttttagctggcaaggttagcagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 8117051 8117077 7.65e-05 0.248 GCATAGTGAAGCCAGCCAGACCCGAGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 + 62722127 62722153 7.74e-05 0.248 CTATGGTCTTGGGAGGGACTGCAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 124625014 124625040 7.74e-05 0.248 GCACtgccagggccaccgtgacaaagc
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 122974566 122974592 7.81e-05 0.248 GATGTGGTTTCATTGCCTGAGCAAATT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr7 - 138781189 138781215 7.83e-05 0.248 GCTTTTAGCTGGCAAGGCCAGCAGTAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 + 36132092 36132118 7.97e-05 0.251 gttttcaccttgcagggctatcagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 + 91042926 91042952 8.24e-05 0.257 gatttggtttgattgcttgaggaaatt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 154815474 154815500 8.24e-05 0.257 GATTTTTCAGGGCAACACAAGAAACGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 - 44705805 44705831 8.42e-05 0.259 GCAGGGTCTTGGTGTTCTTCGCAATAC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 79493375 79493401 8.42e-05 0.259 GATGTGTTTTTATTGCTTGAGCAAATT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 24893140 24893166 8.57e-05 0.262 AGATGGTCAGGGAAGGTCTCTCAGAGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 - 48377789 48377815 8.61e-05 0.262 ACTCTGTTAATGCTTCCAGGTCAAAGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr1 - 24892943 24892969 8.72e-05 0.263 CAGTTTACATGGCAGGGACAGCAGAGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr20 - 61916497 61916523 8.73e-05 0.263 GAATGGTTATGATGACGACAGCAGCTA
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 7383470 7383496 8.81e-05 0.264 agtttgctagggctgtcatgacaaagt
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr5 - 61911599 61911625 8.88e-05 0.264 GTCTTCACCTGGCAAGGCCAGCAATAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 36670714 36670740 8.99e-05 0.264 gctttcactgtgctgcctcaggagtat
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr12 + 110835776 110835802 9.03e-05 0.264 GCAGGGTCACAGCATGGCCTGCAATCT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr17 - 41146038 41146064 9.07e-05 0.264 ACATTTTCATGGCAAGGAACGCAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 + 239014607 239014633 9.07e-05 0.264 GCAGGGACCTGGGAGGGGTAGCAATGG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr10 - 90701717 90701743 9.1e-05 0.264 GTTGGCATTTCATTGCCTGAGCAAATG
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr3 + 184574638 184574664 9.16e-05 0.265 ATGTTGTCATGAGAAGGTGAACAGTGC
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr16 + 50615562 50615588 9.21e-05 0.265 gtgagagcatggcaggctcagaaaagg
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr2 - 121223641 121223667 9.29e-05 0.266 GCATTGGCATGGTAGATGCCACAATGT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr6 + 142193790 142193816 9.54e-05 0.271 gctttcatctggcatggccagcagtac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr13 + 41008440 41008466 9.56e-05 0.271 gctttgactctgttggcttctcaatac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 8116180 8116206 9.62e-05 0.271 gctttgtcctgatagggtatgcagtac
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr11 - 43875824 43875850 9.68e-05 0.271 GCATTTACTTGGCATGGCCAACAGTAT
RCTTTGTCATGGCAGCCCTAGCARACK MEME-8 chr19 + 2483671 2483697 9.94e-05 0.277 ACATGTGCCTGGGAATCCCAGCAGTAT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_9 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif RCTTTGTCATGGCAGCCCTAGCARACK /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_9 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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