# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:10 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF157.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:10 PDT 2018) # host: wotan # when: Thu May 10 17:37:53 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.258 C 0.240 G 0.242 T 0.260 MOTIF CARTATAC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CARTATAC GTATAYTG 207 3 6.7e-067 1.9e-062 # CAATATAC GTATATTG 148 2 3.2e-046 9.2e-042 # CAGTATAC GTATACTG 59 1 1.2e-017 3.5e-013 letter-probability matrix: alength= 4 w= 8 nsites= 208 E= 1.9e-062 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.716346 0.000000 0.283654 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCYTGCCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCYTGCCA TGGCARGG 168 5 2.6e-049 7.4e-045 # CCTTGCCA TGGCAAGG 132 2 1.6e-040 4.4e-036 # CCCTGCCA TGGCAGGG 36 3 1.1e-008 3.2e-004 letter-probability matrix: alength= 4 w= 8 nsites= 168 E= 7.4e-045 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGAAGYA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAGAAGYA TRCTTCTG 136 1 1.6e-043 4.4e-039 # CAGAAGCA TGCTTCTG 126 1 5.4e-040 1.5e-035 # CAGAAGTA TACTTCTG 10 0 9.4e-004 2.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 136 E= 4.4e-039 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.926471 0.000000 0.073529 1.000000 0.000000 0.000000 0.000000 MOTIF AADGCAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AADGCAAA TTTGCHTT 173 13 1.2e-042 3.5e-038 # AAGGCAAA TTTGCCTT 97 3 2.5e-027 6.9e-023 # AAAGCAAA TTTGCTTT 62 6 1.0e-013 2.9e-009 # AATGCAAA TTTGCATT 15 4 9.1e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 175 E= 3.5e-038 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.354286 0.000000 0.560000 0.085714 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGTRAAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CAGTRAAG CTTYACTG 133 3 1.8e-039 5.0e-035 # CAGTAAAG CTTTACTG 83 1 2.2e-025 6.3e-021 # CAGTGAAG CTTCACTG 50 2 1.1e-013 3.2e-009 letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 5.0e-035 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.624060 0.000000 0.375940 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTGTAY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GTGTAY RTACAC 212 50 2.6e-031 7.4e-027 # GTGTAT ATACAC 128 29 2.2e-018 6.3e-014 # GTGTAC GTACAC 100 24 1.1e-013 3.1e-009 letter-probability matrix: alength= 4 w= 6 nsites= 250 E= 7.4e-027 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.436000 0.000000 0.564000 MOTIF CTACMTCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTACMTCA TGAKGTAG 97 1 5.0e-030 1.4e-025 # CTACCTCA TGAGGTAG 89 1 2.3e-027 6.4e-023 # CTACATCA TGATGTAG 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 1.4e-025 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.082474 0.917526 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF KGGCCTTA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST KGGCCTTA TAAGGCCM 90 2 2.7e-026 7.4e-022 # GGGCCTTA TAAGGCCC 81 2 2.3e-023 6.2e-019 # TGGCCTTA TAAGGCCA 11 0 4.7e-004 1.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 92 E= 7.4e-022 0.000000 0.000000 0.880435 0.119565 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTSTCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CTSTCC GGASAG 192 55 1.5e-023 4.1e-019 # CTGTCC GGACAG 129 25 1.3e-020 3.4e-016 # CTCTCC GGAGAG 74 30 3.9e-006 1.1e-001 letter-probability matrix: alength= 4 w= 6 nsites= 215 E= 4.1e-019 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.353488 0.646512 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TATRTCAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TATRTCAA TTGAYATA 64 2 5.6e-018 1.5e-013 # TATATCAA TTGATATA 56 2 1.7e-015 4.6e-011 # TATGTCAA TTGACATA 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 1.5e-013 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.875000 0.000000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGGAGAA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ATGGAGAA TTCTCCAT 46 1 1.4e-013 3.9e-009 # ATGGAGAA TTCTCCAT 46 1 1.4e-013 3.9e-009 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.9e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCADGACA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CCADGACA TGTCHTGG 41 3 4.4e-010 1.2e-005 # CCAGGACA TGTCCTGG 14 0 5.7e-005 1.5e+000 # CCATGACA TGTCATGG 16 2 6.1e-004 1.6e+001 # CCAAGACA TGTCTTGG 11 1 3.1e-003 8.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.2e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.268293 0.000000 0.341463 0.390244 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAGACMA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AAGACMA TKGTCTT 45 11 1.6e-006 4.4e-002 # AAGACCA TGGTCTT 31 9 2.8e-004 7.4e+000 # AAGACAA TTGTCTT 14 2 2.0e-003 5.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 45 E= 4.4e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.311111 0.688889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 185.60 seconds