Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
TGACTCAB 8 TGACTCAT
RTCTCAAA 8 GTCTCAAA
AAATAAAT 8 AAATAAAT
GCCTYCC 7 GCCTCCC
CCAGGM 6 CCAGGC
CRAGACTC 8 CAAGACTC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.260 C 0.240 G 0.240 T 0.260

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GCCTYCC DREME-4 chr16 - 46616 46622 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr7 - 625764 625770 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr8 + 631151 631157 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 + 1027632 1027638 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 - 1027680 1027686 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 - 1027732 1027738 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 + 1259075 1259081 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr17 + 1259209 1259215 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr17 - 1259395 1259401 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 1576211 1576217 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 - 1924705 1924711 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 - 1924880 1924886 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 - 1925003 1925009 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 6404600 6404606 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 6404632 6404638 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 6627026 6627032 4.92e-05 0.15 GCctccc
GCCTYCC DREME-4 chr5 - 6690793 6690799 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 8093755 8093761 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 8093787 8093793 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 8197621 8197627 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 8240625 8240631 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 + 10423370 10423376 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 12918711 12918717 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 12918843 12918849 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 12918875 12918881 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 - 13224269 13224275 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 - 15591350 15591356 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 - 15591485 15591491 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 - 15591517 15591523 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 16406687 16406693 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr8 + 17616280 17616286 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr8 + 17616312 17616318 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr22 + 20496503 20496509 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr16 - 21572675 21572681 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 + 21821094 21821100 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr16 + 21821126 21821132 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr8 - 21954526 21954532 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 + 22295601 22295607 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr16 + 22295633 22295639 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr14 + 22997157 22997163 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chrX - 23771875 23771881 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chrX + 24143970 24143976 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chrX + 24144435 24144441 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 - 29524884 29524890 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 29811080 29811086 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr16 - 30052589 30052595 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 - 30052621 30052627 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 + 30119066 30119072 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr6 + 30119098 30119104 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr16 + 30787271 30787277 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 - 31763106 31763112 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr5 - 32282345 32282351 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr5 - 32367359 32367365 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 - 32699835 32699841 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 + 32772189 32772195 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 33274136 33274142 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 33821614 33821620 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 34159321 34159327 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 - 34170320 34170326 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 34170454 34170460 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr5 + 34182271 34182277 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr5 + 34182529 34182535 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr5 + 34191359 34191365 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 34234982 34234988 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 34235014 34235020 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr17 + 34613085 34613091 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 35318134 35318140 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr17 - 35567406 35567412 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 35567438 35567444 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 35567635 35567641 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 35701733 35701739 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 35701980 35701986 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 35702115 35702121 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr17 - 35763789 35763795 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 35870541 35870547 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 35880465 35880471 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 35921011 35921017 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 36070276 36070282 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 36070411 36070417 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 + 36159143 36159149 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 + 36159175 36159181 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr10 - 36739835 36739841 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 36910302 36910308 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 36910438 36910444 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 37160233 37160239 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 37364947 37364953 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 37365081 37365087 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 - 37371322 37371328 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 37440991 37440997 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 37466519 37466525 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 37918763 37918769 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 38518011 38518017 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 38787599 38787605 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 + 38787900 38787906 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 38799994 38800000 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr22 + 38985152 38985158 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 - 39073977 39073983 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 39313506 39313512 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 39313746 39313752 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 39410447 39410453 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 40103701 40103707 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 40140160 40140166 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 + 40140479 40140485 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 40325175 40325181 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 40505568 40505574 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 40577799 40577805 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr22 - 40625535 40625541 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 40903104 40903110 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 40903245 40903251 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 40920984 40920990 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 40921223 40921229 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 41493218 41493224 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr2 + 43210756 43210762 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr2 + 43210992 43210998 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 + 43702668 43702674 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 43709524 43709530 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 43709721 43709727 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr21 + 43848394 43848400 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr21 - 43857489 43857495 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 43857521 43857527 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 43857654 43857660 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 - 43857820 43857826 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr21 + 43918829 43918835 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 44259750 44259756 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr20 - 45349492 45349498 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 45653278 45653284 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 47228633 47228639 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 47962570 47962576 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 47962602 47962608 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr17 - 48729091 48729097 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 + 48866432 48866438 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr12 + 48866731 48866737 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr18 + 48873883 48873889 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr20 + 48920839 48920845 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr20 + 48921195 48921201 4.92e-05 0.15 gccTCCC
GCCTYCC DREME-4 chr18 + 49515330 49515336 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 - 50134285 50134291 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 50136706 50136712 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr18 + 50280666 50280672 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr18 + 50280675 50280681 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 - 51689008 51689014 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr19 + 51689123 51689129 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr12 + 53436763 53436769 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr12 + 53436929 53436935 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 - 54190413 54190419 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr14 + 54489671 54489677 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 55216418 55216424 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr19 + 56594716 56594722 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr3 - 61732501 61732507 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr3 - 61732601 61732607 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 62356629 62356635 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 66890491 66890497 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 67698939 67698945 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr15 + 69074429 69074435 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 - 72009261 72009267 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr16 - 72931332 72931338 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr17 - 78558378 78558384 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr8 + 79795150 79795156 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr2 + 86440733 86440739 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr9 + 86738173 86738179 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr9 + 86738205 86738211 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr9 + 86738338 86738344 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr10 + 86796694 86796700 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr9 + 92147249 92147255 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr10 + 96580351 96580357 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr10 + 96580518 96580524 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr10 - 97070017 97070023 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr10 + 103527547 103527553 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr5 + 111092256 111092262 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr10 - 114649326 114649332 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 115258619 115258625 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr10 + 119091938 119091944 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr10 + 119092101 119092107 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr11 + 119216457 119216463 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr7 + 128361066 128361072 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr9 + 136307241 136307247 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr5 - 139454300 139454306 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 + 149964083 149964089 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr6 - 150309034 150309040 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr4 - 190111998 190112004 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 234724067 234724073 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 + 235364124 235364130 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 + 235364156 235364162 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 + 235364295 235364301 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 + 235364471 235364477 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 + 235364503 235364509 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 - 236085664 236085670 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 + 236098722 236098728 4.92e-05 0.15 gcctccc
GCCTYCC DREME-4 chr1 - 236315160 236315166 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 236315192 236315198 4.92e-05 0.15 GCCTCCC
GCCTYCC DREME-4 chr1 - 236315489 236315495 4.92e-05 0.15 GCCTCCC
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_18 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GCCTYCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings: 


  

    output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_18
    MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml
    sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
  
  

    background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

Go to top