# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:10 PDT 2018)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF155.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:10 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:47:52 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.278 C 0.228 G 0.230 T 0.265


MOTIF TGACTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAB   VTGAGTCA         52          7   2.8e-010   7.6e-006
#         TGACTCAT   ATGAGTCA         27          3   3.3e-006   8.9e-002
#         TGACTCAG   CTGAGTCA         14          1   4.6e-004   1.2e+001
#         TGACTCAC   GTGAGTCA         17          4   3.4e-003   9.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 7.6e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.277108 0.289157 0.433735


MOTIF RTCTCAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTCTCAAA   TTTGAGAY         49          6   4.1e-010   1.1e-005
#         GTCTCAAA   TTTGAGAC         34          3   4.1e-008   1.1e-003
#         ATCTCAAA   TTTGAGAT         15          3   3.6e-003   9.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.1e-005
0.306122 0.000000 0.693878 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATAAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAAAT   ATTTATTT         76         20   8.9e-010   2.4e-005
#         AAATAAAT   ATTTATTT         76         20   8.9e-010   2.4e-005

letter-probability matrix: alength= 4 w= 8 nsites= 359 E= 2.4e-005
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GCCTYCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GCCTYCC    GGRAGGC         42          7   1.1e-007   2.9e-003
#          GCCTCCC    GGGAGGC         30          4   2.3e-006   6.2e-002
#          GCCTTCC    GGAAGGC         15          3   3.6e-003   9.5e+001

letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 2.9e-003
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.652174 0.000000 0.347826
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCAGGM DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CCAGGM     KCCTGG         77         28   3.1e-007   8.2e-003
#           CCAGGC     GCCTGG         45         10   6.1e-007   1.6e-002
#           CCAGGA     TCCTGG         37         18   6.2e-003   1.6e+002

letter-probability matrix: alength= 4 w= 6 nsites= 87 E= 8.2e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.459770 0.540230 0.000000 0.000000


MOTIF CRAGACTC DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CRAGACTC   GAGTCTYG         21          0   4.0e-007   1.0e-002
#         CAAGACTC   GAGTCTTG         11          0   4.7e-004   1.2e+001
#         CGAGACTC   GAGTCTCG         10          0   9.4e-004   2.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.0e-002
0.000000 1.000000 0.000000 0.000000
0.523810 0.000000 0.476190 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 92.09 seconds