# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF148.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF148.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF148.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF148.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:10 PDT 2018)
#   negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF148.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:10 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:56:26 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.233 C 0.260 G 0.268 T 0.239


MOTIF TAAYGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TAAYGA     TCRTTA         57         12   7.7e-009   2.2e-004
#           TAATGA     TCATTA         49         12   5.4e-007   1.6e-002
#           TAACGA     TCGTTA          9          0   1.9e-003   5.5e+001

letter-probability matrix: alength= 4 w= 6 nsites= 80 E= 2.2e-004
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.125000 0.000000 0.875000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCACCAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCACCAT   ATGGTGAT         51         10   2.3e-008   6.7e-004
#         ATCACCAT   ATGGTGAT         51         10   2.3e-008   6.7e-004

letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 6.7e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GGTGAYGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTGAYGA   TCRTCACC         48         12   9.1e-007   2.6e-002
#         GGTGATGA   TCATCACC         43         12   1.1e-005   3.1e-001
#         GGTGACGA   TCGTCACC          7          0   7.7e-003   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 2.6e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.093333 0.000000 0.906667
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 55.82 seconds