Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GAATABTA 8 GAATACTA
CYTTTTY 7 CCTTTTT
AYGGCTG 7 ATGGCTG
ACATGRAT 8 ACATGGAT
CTRCAAAG 8 CTGCAAAG
ATGAGWTC 8 ATGAGTTC
AYATAYAC 8 ATATACAC
CCAGCTBC 8 CCAGCTTC
AAATGTGG 8 AAATGTGG
AARCCATC 8 AAACCATC
CTTWATCC 8 CTTTATCC
ATYCTCAG 8 ATTCTCAG
AYGTC 5 ATGTC
ACACMATG 8 ACACCATG
AAACTAWC 8 AAACTAAC
AACRAGAT 8 AACAAGAT
CCTGYAAA 8 CCTGCAAA
AAAAYGT 7 AAAATGT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.283 C 0.217 G 0.217 T 0.283


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
ATGAGWTC DREME-6 chr17 - 829796 829803 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr17 - 1642509 1642516 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr8 - 1790163 1790170 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr12 - 2102909 2102916 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 2880260 2880267 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 3167126 3167133 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr3 - 5147345 5147352 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr17 - 8682763 8682770 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 11632154 11632161 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 13331159 13331166 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 14163345 14163352 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 15699517 15699524 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 16641596 16641603 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 17138225 17138232 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chrX - 21950771 21950778 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr22 - 22051288 22051295 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr16 - 22351187 22351194 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr14 - 22615962 22615969 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr16 - 22651439 22651446 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr16 - 22718772 22718779 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 29210684 29210691 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 29916046 29916053 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 30291013 30291020 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr14 - 31204070 31204077 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 32978617 32978624 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 33313100 33313107 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr21 - 33507354 33507361 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 34329974 34329981 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 34493143 34493150 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr20 - 35071607 35071614 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 35344900 35344907 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 37076698 37076705 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr21 - 37549859 37549866 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr4 - 37923279 37923286 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 38105547 38105554 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr8 - 39066076 39066083 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 40547354 40547361 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 40964534 40964541 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr17 - 43186844 43186851 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 44220105 44220112 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr21 - 45952671 45952678 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr13 - 46460411 46460418 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr21 - 46631127 46631134 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 46654865 46654872 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr21 - 46676735 46676742 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr17 - 46839851 46839858 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 47691527 47691534 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr8 - 47873816 47873823 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 53346236 53346243 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr20 - 54129725 54129732 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 55991064 55991071 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr19 - 56149809 56149816 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 61977182 61977189 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr17 - 63090532 63090539 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 67939351 67939358 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 68490428 68490435 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 69146898 69146905 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 69880147 69880154 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 70192763 70192770 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 70419149 70419156 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 75410723 75410730 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 75586620 75586627 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 76050252 76050259 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 77400616 77400623 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 78047026 78047033 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 78665992 78665999 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 81714232 81714239 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 84388371 84388378 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr12 - 85628745 85628752 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr9 - 85718003 85718010 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 86989895 86989902 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr9 - 87210844 87210851 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 87590870 87590877 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 93911057 93911064 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr4 - 93923740 93923747 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr7 - 100940932 100940939 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 101098805 101098812 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr15 - 101287509 101287516 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr12 - 108990272 108990279 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 109461280 109461287 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 110468461 110468468 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 110727976 110727983 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr13 - 111593671 111593678 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr7 - 117414807 117414814 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr10 - 119239843 119239850 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr7 - 121005254 121005261 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr11 - 126143680 126143687 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr4 - 127899876 127899883 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 134373809 134373816 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 135165434 135165441 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 140199131 140199138 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr7 - 148750625 148750632 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 150248660 150248667 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 150928919 150928926 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chrX - 152835624 152835631 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr6 - 154811863 154811870 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr5 - 158494224 158494231 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 161539125 161539132 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 161620579 161620586 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 163089279 163089286 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr3 - 169197115 169197122 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr3 - 171814835 171814842 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 180006934 180006941 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr3 - 195695440 195695447 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 212475995 212476002 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 223865172 223865179 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 224005136 224005143 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 224566693 224566700 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 230062482 230062489 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 231637129 231637136 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 231645837 231645844 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 234762303 234762310 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 236078407 236078414 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 236186662 236186669 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 240275414 240275421 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chr1 - 242058361 242058368 1.86e-05 0.0517 ATGAGTTC
ATGAGWTC DREME-6 chrX + 511324 511331 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 852425 852432 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr12 + 1317233 1317240 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr12 + 1341491 1341498 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chrX + 1564282 1564289 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 2614225 2614232 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 3613786 3613793 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr16 + 4156740 4156747 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr10 + 5777964 5777971 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 7031161 7031168 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr8 + 11432892 11432899 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr16 + 14063624 14063631 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr3 + 14328770 14328777 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 16611085 16611092 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 16628668 16628675 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 17307522 17307529 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr8 + 17604414 17604421 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr8 + 19113070 19113077 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chrX + 19511997 19512004 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 21094450 21094457 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr20 + 25583803 25583810 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr8 + 27813147 27813154 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr19 + 28295049 28295056 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr10 + 32148000 32148007 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr20 + 35164715 35164722 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr17 + 36121291 36121298 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr8 + 37485769 37485776 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 37694527 37694534 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 37973910 37973917 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 38516886 38516893 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 38845304 38845311 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr19 + 39059371 39059378 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr19 + 40091916 40091923 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 41229419 41229426 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr21 + 41949817 41949824 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 43060253 43060260 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 44347053 44347060 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr15 + 44689540 44689547 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 44956193 44956200 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr21 + 45622131 45622138 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr10 + 45671510 45671517 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr21 + 45808868 45808875 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr17 + 46922162 46922169 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr12 + 49714195 49714202 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr13 + 50257111 50257118 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr20 + 54129457 54129464 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr17 + 55438363 55438370 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 58308610 58308617 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr17 + 58678504 58678511 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 59015953 59015960 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 61730883 61730890 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr15 + 66691091 66691098 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr12 + 67072470 67072477 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chrX + 68656687 68656694 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr15 + 70373570 70373577 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr15 + 70746812 70746819 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 73212887 73212894 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 73592240 73592247 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 75784106 75784113 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr9 + 75901300 75901307 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 79398870 79398877 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr15 + 80965632 80965639 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr15 + 82534692 82534699 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr17 + 82955827 82955834 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 83256870 83256877 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 87709247 87709254 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr10 + 88663347 88663354 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr14 + 102866107 102866114 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr7 + 105303143 105303150 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr7 + 107912028 107912035 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr12 + 122905458 122905465 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chrX + 123722396 123722403 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr10 + 126379370 126379377 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr7 + 135639887 135639894 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 136401460 136401467 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 + 143448076 143448083 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr7 + 148430772 148430779 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr7 + 148430833 148430840 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr7 + 148430894 148430901 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr2 + 152198100 152198107 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr4 + 159068339 159068346 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 162054168 162054175 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr2 + 169817610 169817617 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr5 + 176198509 176198516 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 183066634 183066641 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr3 + 187023564 187023571 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr3 + 196018352 196018359 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 207320344 207320351 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 223848645 223848652 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 225229597 225229604 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 226432143 226432150 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 226854734 226854741 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 226999778 226999785 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 233345411 233345418 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 235904015 235904022 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr1 + 235915681 235915688 1.86e-05 0.0517 atgagttc
ATGAGWTC DREME-6 chr6 - 2614348 2614355 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr17 - 2660578 2660585 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr10 - 6064909 6064916 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr10 - 6238894 6238901 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr17 - 8037331 8037338 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr5 - 11414925 11414932 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr16 - 14063801 14063808 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr6 - 16628791 16628798 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr5 - 17039371 17039378 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr5 - 17307645 17307652 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr5 - 17357678 17357685 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr2 - 24480434 24480441 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 28295179 28295186 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr16 - 28816568 28816575 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 29249846 29249853 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr1 - 31816655 31816662 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr5 - 32214555 32214562 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr21 - 33040407 33040414 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 33154530 33154537 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 33479746 33479753 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr14 - 34381494 34381501 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 37197186 37197193 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr17 - 37414124 37414131 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 39059501 39059508 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 40829528 40829535 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr19 - 40964415 40964422 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr21 - 45626346 45626353 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr17 - 50040676 50040683 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr5 - 54393164 54393171 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr17 - 58794738 58794745 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr15 - 66775483 66775490 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr15 - 77068811 77068818 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr13 - 95573926 95573933 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr12 - 101560146 101560153 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr10 - 110468347 110468354 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr10 - 114720198 114720205 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr7 - 148573762 148573769 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr1 - 162150300 162150307 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr3 - 196673826 196673833 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr1 - 214609867 214609874 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr1 - 244762783 244762790 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr10 + 2884190 2884197 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr6 + 2968128 2968135 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr17 + 8244974 8244981 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr1 + 16641466 16641473 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr16 + 23579561 23579568 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr21 + 33507224 33507231 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr17 + 35372149 35372156 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr17 + 35703508 35703515 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr21 + 45622250 45622257 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr17 + 59021456 59021463 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chrX + 72176582 72176589 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr7 + 73495709 73495716 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr15 + 77400486 77400493 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr6 + 82530140 82530147 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr6 + 82530317 82530324 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr10 + 87748428 87748435 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr16 + 89246328 89246335 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr1 + 93911251 93911258 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr10 + 101980888 101980895 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chrX + 130301708 130301715 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr6 + 158036444 158036451 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr3 + 169039405 169039412 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr2 + 169582735 169582742 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr1 + 203314727 203314734 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr1 + 225645224 225645231 3.72e-05 0.0786 ATGAGATC
ATGAGWTC DREME-6 chr1 + 229394701 229394708 3.72e-05 0.0786 atgagatc
ATGAGWTC DREME-6 chr19 - 3539757 3539764 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr8 - 6880938 6880945 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr19 - 16254818 16254825 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr10 - 23421043 23421050 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr19 - 30486426 30486433 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr21 - 44298355 44298362 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr19 - 45437653 45437660 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr1 - 51412038 51412045 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chrX - 72176465 72176472 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr10 - 124082819 124082826 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr10 - 126172938 126172945 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr10 - 131912562 131912569 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr1 - 225310772 225310779 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr19 + 2515121 2515128 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chrX + 2534859 2534866 6.56e-05 0.128 atgagctc
ATGAGWTC DREME-6 chr1 + 3680167 3680174 6.56e-05 0.128 ATGAGGTC
ATGAGWTC DREME-6 chr8 + 6880936 6880943 6.56e-05 0.128 atgagctc
ATGAGWTC DREME-6 chr17 + 38905308 38905315 6.56e-05 0.128 atgaggtc
ATGAGWTC DREME-6 chr1 + 51412036 51412043 6.56e-05 0.128 atgagctc
ATGAGWTC DREME-6 chrX + 72176463 72176470 6.56e-05 0.128 atgagctc
ATGAGWTC DREME-6 chr14 + 105316963 105316970 6.56e-05 0.128 ATGAGCTC
ATGAGWTC DREME-6 chr10 + 119151149 119151156 6.56e-05 0.128 atgaggtc
ATGAGWTC DREME-6 chr1 + 225310770 225310777 6.56e-05 0.128 atgagctc

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_12 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif ATGAGWTC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_12 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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