# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:10 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF146.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:10 PDT 2018) # host: wotan # when: Thu May 10 17:18:53 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.288 C 0.206 G 0.203 T 0.302 MOTIF GAATABTA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GAATABTA TAVTATTC 503 3 2.0e-232 4.3e-228 # GAATACTA TAGTATTC 394 2 3.2e-158 6.8e-154 # GAATATTA TAATATTC 91 1 5.0e-028 1.1e-023 # GAATAGTA TACTATTC 34 0 3.6e-011 7.6e-007 letter-probability matrix: alength= 4 w= 8 nsites= 507 E= 4.3e-228 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.769231 0.051282 0.179487 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYTTTTY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CYTTTTY RAAAARG 502 39 1.1e-181 2.4e-177 # CCTTTTT AAAAAGG 265 12 9.4e-079 1.9e-074 # CTTTTTT AAAAAAG 238 16 1.4e-063 2.9e-059 # CTTTTTC GAAAAAG 119 12 6.3e-026 1.3e-021 # CCTTTTC GAAAAGG 105 7 9.4e-026 1.9e-021 letter-probability matrix: alength= 4 w= 7 nsites= 527 E= 2.4e-177 0.000000 1.000000 0.000000 0.000000 0.000000 0.519924 0.000000 0.480076 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.383302 0.000000 0.616698 MOTIF AYGGCTG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AYGGCTG CAGCCRT 411 17 3.8e-145 7.7e-141 # ATGGCTG CAGCCAT 399 17 3.7e-138 7.5e-134 # ACGGCTG CAGCCGT 12 0 2.3e-004 4.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 421 E= 7.7e-141 1.000000 0.000000 0.000000 0.000000 0.000000 0.030879 0.000000 0.969121 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACATGRAT DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACATGRAT ATYCATGT 294 8 1.8e-096 3.5e-092 # ACATGGAT ATCCATGT 273 5 2.3e-091 4.6e-087 # ACATGAAT ATTCATGT 28 3 1.8e-006 3.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 304 E= 3.5e-092 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.095395 0.000000 0.904605 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CTRCAAAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTRCAAAG CTTTGYAG 240 1 6.7e-084 1.3e-079 # CTGCAAAG CTTTGCAG 175 0 6.9e-060 1.4e-055 # CTACAAAG CTTTGTAG 65 1 1.5e-019 3.0e-015 letter-probability matrix: alength= 4 w= 8 nsites= 241 E= 1.3e-079 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.269710 0.000000 0.730290 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATGAGWTC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATGAGWTC GAWCTCAT 237 2 9.2e-081 1.8e-076 # ATGAGTTC GAACTCAT 186 1 4.4e-062 8.7e-058 # ATGAGATC GATCTCAT 51 1 4.0e-015 8.0e-011 letter-probability matrix: alength= 4 w= 8 nsites= 238 E= 1.8e-076 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.214286 0.000000 0.000000 0.785714 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AYATAYAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AYATAYAC GTRTATRT 238 6 5.1e-075 1.0e-070 # ATATACAC GTGTATAT 179 2 1.2e-057 2.3e-053 # ACATATAC GTATATGT 162 2 2.6e-051 5.0e-047 # ACATACAC GTGTATGT 23 0 9.6e-008 1.9e-003 # ATATATAC GTATATAT 27 2 6.3e-007 1.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 238 E= 1.0e-070 1.000000 0.000000 0.000000 0.000000 0.000000 0.441176 0.000000 0.558824 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.558824 0.000000 0.441176 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCAGCTBC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCAGCTBC GVAGCTGG 193 5 1.3e-058 2.6e-054 # CCAGCTTC GAAGCTGG 144 2 8.8e-045 1.7e-040 # CCAGCTCC GGAGCTGG 34 0 3.6e-011 7.0e-007 # CCAGCTGC GCAGCTGG 15 3 3.6e-003 6.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 193 E= 2.6e-054 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.176166 0.077720 0.746114 0.000000 1.000000 0.000000 0.000000 MOTIF AAATGTGG DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AAATGTGG CCACATTT 165 2 2.0e-052 3.9e-048 # AAATGTGG CCACATTT 165 2 2.0e-052 3.9e-048 letter-probability matrix: alength= 4 w= 8 nsites= 165 E= 3.9e-048 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AARCCATC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AARCCATC GATGGYTT 110 3 1.2e-031 2.4e-027 # AAACCATC GATGGTTT 89 3 9.6e-025 1.9e-020 # AAGCCATC GATGGCTT 21 0 4.0e-007 7.7e-003 letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 2.4e-027 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.809091 0.000000 0.190909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTTWATCC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CTTWATCC GGATWAAG 70 2 7.4e-020 1.4e-015 # CTTTATCC GGATAAAG 41 1 5.0e-012 9.5e-008 # CTTAATCC GGATTAAG 29 1 2.1e-008 4.0e-004 letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.4e-015 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.414286 0.000000 0.000000 0.585714 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATYCTCAG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ATYCTCAG CTGAGRAT 70 3 9.6e-019 1.8e-014 # ATTCTCAG CTGAGAAT 52 2 2.8e-014 5.4e-010 # ATCCTCAG CTGAGGAT 18 1 3.4e-005 6.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.8e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.257143 0.000000 0.742857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AYGTC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AYGTC GACRT 325 176 1.5e-018 2.8e-014 # ATGTC GACAT 306 170 5.8e-016 1.1e-011 # ACGTC GACGT 26 8 1.3e-003 2.4e+001 letter-probability matrix: alength= 4 w= 5 nsites= 369 E= 2.8e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.070461 0.000000 0.929539 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACACMATG DREME-14 # Word RC Word Pos Neg P-value E-value # BEST ACACMATG CATKGTGT 73 9 1.1e-014 2.1e-010 # ACACCATG CATGGTGT 51 3 5.4e-013 1.0e-008 # ACACAATG CATTGTGT 22 6 1.7e-003 3.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 2.1e-010 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.320000 0.680000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAACTAWC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AAACTAWC GWTAGTTT 43 2 1.4e-011 2.6e-007 # AAACTAAC GTTAGTTT 27 1 8.2e-008 1.5e-003 # AAACTATC GATAGTTT 16 1 1.3e-004 2.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.6e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.613636 0.000000 0.000000 0.386364 0.000000 1.000000 0.000000 0.000000 MOTIF AACRAGAT DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AACRAGAT ATCTYGTT 33 3 7.8e-008 1.4e-003 # AACAAGAT ATCTTGTT 24 3 2.1e-005 3.8e-001 # AACGAGAT ATCTCGTT 9 0 1.9e-003 3.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.4e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CCTGYAAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CCTGYAAA TTTRCAGG 26 1 1.6e-007 2.9e-003 # CCTGCAAA TTTGCAGG 18 1 3.4e-005 6.2e-001 # CCTGTAAA TTTACAGG 8 0 3.8e-003 7.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.9e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.692308 0.000000 0.307692 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAAYGT DREME-18 # Word RC Word Pos Neg P-value E-value # BEST AAAAYGT ACRTTTT 48 13 2.3e-006 4.1e-002 # AAAACGT ACGTTTT 13 0 1.1e-004 2.1e+000 # AAAATGT ACATTTT 35 13 8.5e-004 1.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 4.1e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.270833 0.000000 0.729167 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: E-value threshold exceeded # Running time: 203.36 seconds