# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:09:28 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:09:28 PST 2017) # host: surya # when: Mon Dec 18 16:23:33 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.335 C 0.173 G 0.175 T 0.318 MOTIF GAATTGY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GAATTGY RCAATTC 240 10 8.8e-071 2.4e-066 # GAATTGC GCAATTC 217 5 6.4e-068 1.7e-063 # GAATTGT ACAATTC 24 5 2.4e-004 6.3e+000 letter-probability matrix: alength= 4 w= 7 nsites= 247 E= 2.4e-066 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.902834 0.000000 0.097166 MOTIF RCTCY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RCTCY RGAGY 490 225 5.9e-057 1.6e-052 # ACTCC GGAGT 208 60 1.0e-025 2.8e-021 # ACTCT AGAGT 185 77 2.0e-014 5.2e-010 # GCTCC GGAGC 159 65 1.5e-012 4.0e-008 # GCTCT AGAGC 155 88 9.5e-007 2.5e-002 letter-probability matrix: alength= 4 w= 5 nsites= 794 E= 1.6e-052 0.542821 0.000000 0.457179 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.523929 0.000000 0.476071 MOTIF TAAATAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 295 64 8.9e-051 2.2e-046 # TAAATAAA TTTATTTA 295 64 8.9e-051 2.2e-046 letter-probability matrix: alength= 4 w= 8 nsites= 1467 E= 2.2e-046 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTCTCAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST RTCTCAA TTGAGAY 174 12 6.7e-044 1.6e-039 # GTCTCAA TTGAGAC 118 1 3.4e-037 8.1e-033 # ATCTCAA TTGAGAT 57 11 2.5e-009 6.1e-005 letter-probability matrix: alength= 4 w= 7 nsites= 175 E= 1.6e-039 0.325714 0.000000 0.674286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAAAACAB DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GAAAACAB VTGTTTTC 59 2 2.0e-016 4.8e-012 # GAAAACAG CTGTTTTC 24 0 4.7e-008 1.1e-003 # GAAAACAT ATGTTTTC 27 2 6.3e-007 1.5e-002 # GAAAACAC GTGTTTTC 8 0 3.8e-003 9.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 4.8e-012 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.135593 0.406780 0.457627 MOTIF CCCAARAG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCCAARAG CTYTTGGG 55 3 3.5e-014 8.4e-010 # CCCAAGAG CTCTTGGG 35 2 3.2e-009 7.7e-005 # CCCAAAAG CTTTTGGG 20 1 9.1e-006 2.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 8.4e-010 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.000000 0.636364 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TGACYCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TGACYCA TGRGTCA 65 7 8.0e-014 1.9e-009 # TGACCCA TGGGTCA 52 5 1.2e-011 2.9e-007 # TGACTCA TGAGTCA 14 2 2.0e-003 4.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 67 E= 1.9e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.776119 0.000000 0.223881 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGYGAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GGYGAC GTCRCC 59 8 1.6e-011 3.9e-007 # GGTGAC GTCACC 40 6 9.5e-008 2.2e-003 # GGCGAC GTCGCC 19 2 9.8e-005 2.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 60 E= 3.9e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.316667 0.000000 0.683333 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTGBACA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GTGBACA TGTVCAC 43 5 3.7e-009 8.7e-005 # GTGTACA TGTACAC 16 1 1.3e-004 2.9e+000 # GTGGACA TGTCCAC 16 3 2.1e-003 4.9e+001 # GTGCACA TGTGCAC 11 1 3.1e-003 7.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 43 E= 8.7e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.255814 0.372093 0.372093 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGTTYA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ATGTTYA TRAACAT 52 12 1.1e-007 2.7e-003 # ATGTTCA TGAACAT 28 5 2.7e-005 6.2e-001 # ATGTTTA TAAACAT 25 7 9.2e-004 2.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 53 E= 2.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.528302 0.000000 0.471698 1.000000 0.000000 0.000000 0.000000 MOTIF GGTATAYA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GGTATAYA TRTATACC 23 1 1.2e-006 2.8e-002 # GGTATATA TATATACC 16 1 1.3e-004 2.9e+000 # GGTATACA TGTATACC 7 0 7.7e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.8e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.304348 0.000000 0.695652 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 46.30 seconds