Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
AYTCYG 6 ACTCTG
TAAATAAA 8 TAAATAAA
TCTCAAAA 8 TCTCAAAA
CCYAGS 6 CCCAGC
AGAGCRAR 8 AGAGCAAG
AATTCCAC 8 AATTCCAC
CCAARAGA 8 CCAAGAGA
KGAAAACA 8 TGAAAACA
GAGWC 5 GAGAC
ACYTGTA 7 ACTTGTA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background):
A 0.294 C 0.206 G 0.206 T 0.294


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
TCTCAAAA DREME-3 chr10 - 194424 194431 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 364775 364782 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr12 - 365066 365073 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 + 922545 922552 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 + 1099576 1099583 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 + 1099892 1099899 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 - 3022531 3022538 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr17 + 7450033 7450040 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 - 8078160 8078167 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr17 + 9255522 9255529 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 9604745 9604752 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 10103447 10103454 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 10103645 10103652 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 - 10798843 10798850 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 - 11533273 11533280 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 + 12062372 12062379 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 12679096 12679103 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 13637683 13637690 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 + 14227751 14227758 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 - 14391203 14391210 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr3 + 14628745 14628752 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 14997253 14997260 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 - 15018542 15018549 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 15575770 15575777 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr17 + 16406787 16406794 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chrX + 16603410 16603417 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 17095776 17095783 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 17217012 17217019 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 - 17217157 17217164 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 - 17217220 17217227 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 17740570 17740577 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 + 18097406 18097413 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 19187817 19187824 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 + 19188014 19188021 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 - 19255635 19255642 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 21464818 21464825 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 + 21515171 21515178 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 + 21572538 21572545 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 - 21821023 21821030 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr8 + 21954629 21954636 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 22980353 22980360 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 24144213 24144220 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 24474427 24474434 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr8 + 26253869 26253876 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 - 27326982 27326989 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 - 27663456 27663463 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 29505921 29505928 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 29688481 29688488 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 - 30570766 30570773 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 - 30642519 30642526 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 31105863 31105870 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 - 31755165 31755172 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 - 31755375 31755382 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr20 - 32118649 32118656 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 + 32157973 32157980 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 + 32158086 32158093 2.74e-05 0.0672 TCTCAaaa
TCTCAAAA DREME-3 chr10 - 32174633 32174640 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 32211588 32211595 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 + 32367431 32367438 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 + 32699904 32699911 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 32767141 32767148 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 - 32988909 32988916 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 33123067 33123074 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 - 33150778 33150785 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 33378135 33378142 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 33821510 33821517 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 34234758 34234765 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 + 34881420 34881427 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr15 + 34959970 34959977 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 + 35331785 35331792 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 35380341 35380348 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 - 35386171 35386178 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 - 35964624 35964631 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 + 36019697 36019704 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 - 36019806 36019813 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr21 + 36123183 36123190 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 + 36644007 36644014 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr21 + 36912067 36912074 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 + 37160337 37160344 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 37230380 37230387 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr21 - 37275041 37275048 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 + 37495326 37495333 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 38667234 38667241 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 + 38766462 38766469 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 39117193 39117200 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 39662385 39662392 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 40103772 40103779 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 40325246 40325253 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 40346540 40346547 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 + 40567292 40567299 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 40795413 40795420 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 41082092 41082099 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX + 41282457 41282464 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 - 42916971 42916978 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr19 - 43709420 43709427 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 45011799 45011806 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr20 + 45349380 45349387 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 45395620 45395627 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr22 + 45616854 45616861 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr18 + 46130718 46130725 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 - 47544548 47544555 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr17 - 47544727 47544734 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 - 48866626 48866633 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr17 - 49136559 49136566 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr18 + 49506599 49506606 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr18 - 49515226 49515233 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr18 + 49523758 49523765 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 - 50366846 50366853 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 50617804 50617811 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr13 + 51411208 51411215 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr4 + 52621960 52621967 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 52847883 52847890 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 53664338 53664345 2.74e-05 0.0672 TCTCAAaa
TCTCAAAA DREME-3 chr12 - 53664407 53664414 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 53779846 53779853 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 + 53994689 53994696 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 + 55463631 55463638 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr12 + 56220012 56220019 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr12 - 57258354 57258361 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr17 - 57393697 57393704 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 + 57659972 57659979 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr19 + 57789530 57789537 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 59442782 59442789 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr11 + 59703686 59703693 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr18 + 59892289 59892296 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr14 + 61651370 61651377 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 61838539 61838546 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 - 66760125 66760132 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr11 - 67122689 67122696 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 + 67555248 67555255 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 + 67699179 67699186 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chrX + 68078979 68078986 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chrX + 68079212 68079219 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr2 - 69383638 69383645 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 + 69947103 69947110 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 + 70670266 70670273 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr15 - 70866161 70866168 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX + 71116779 71116786 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chrX + 71181048 71181055 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr17 + 72505201 72505208 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 - 72580490 72580497 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 72720024 72720031 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 + 72904362 72904369 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr12 - 73464616 73464623 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 - 73622338 73622345 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 73792721 73792728 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 - 73883203 73883210 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 - 73898067 73898074 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr2 + 74176759 74176766 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr15 - 75217794 75217801 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr15 - 75217974 75217981 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr15 + 75349809 75349816 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 77742955 77742962 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 78028036 78028043 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX - 78028201 78028208 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr15 + 78404984 78404991 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 - 79011505 79011512 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr13 - 80358339 80358346 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr16 + 80940224 80940231 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 + 81422304 81422311 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 + 86201260 86201267 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 - 86796536 86796543 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 - 86796590 86796597 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr9 - 87126047 87126054 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr13 - 87185363 87185370 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 87285082 87285089 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 87555094 87555101 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 + 87621435 87621442 2.74e-05 0.0672 TCTCaaaa
TCTCAAAA DREME-3 chr10 + 88420006 88420013 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr16 - 89455992 89455999 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr15 + 89788079 89788086 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr14 + 90059521 90059528 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr15 - 90182639 90182646 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 90561057 90561064 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr12 - 95735952 95735959 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 96818939 96818946 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 + 97635741 97635748 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 + 101751967 101751974 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 - 101752211 101752218 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 + 102387803 102387810 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr14 - 102623422 102623429 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 + 103000232 103000239 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 - 103000467 103000474 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr10 + 103359648 103359655 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr7 + 105321890 105321897 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 + 108155486 108155493 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr12 - 112328152 112328159 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 112334384 112334391 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 - 113077714 113077721 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 113113576 113113583 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX + 115644593 115644600 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 + 116938295 116938302 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr11 + 118578157 118578164 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr11 - 119038566 119038573 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr12 + 122513190 122513197 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr9 - 124337990 124337997 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 + 125753693 125753700 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 - 126819503 126819510 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 + 127023726 127023733 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr10 + 128074662 128074669 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr2 + 128228020 128228027 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr9 - 130700372 130700379 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 132992770 132992777 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 134662155 134662162 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 - 138177103 138177110 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 138525523 138525530 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 - 139490129 139490136 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr8 + 140473013 140473020 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr8 + 140473180 140473187 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 - 140493706 140493713 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 - 149308541 149308548 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 + 149541093 149541100 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 149556207 149556214 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 149556400 149556407 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 149963122 149963129 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 149963293 149963300 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 150907723 150907730 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chrX + 153937191 153937198 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 - 157467563 157467570 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr7 + 158785421 158785428 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr6 + 163553002 163553009 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr6 - 163553116 163553123 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr3 + 172143903 172143910 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 + 175559110 175559117 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr5 - 175559323 175559330 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 175899065 175899072 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 - 177345783 177345790 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr5 + 177464441 177464448 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr3 + 190079334 190079341 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr4 + 190112101 190112108 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr3 + 193484305 193484312 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr3 - 195818957 195818964 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 + 224258491 224258498 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 226221558 226221565 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 226221757 226221764 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 + 226252276 226252283 2.74e-05 0.0672 tctcaaaa
TCTCAAAA DREME-3 chr1 - 229919722 229919729 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 245044514 245044521 2.74e-05 0.0672 TCTCAAAA
TCTCAAAA DREME-3 chr1 - 245044591 245044598 2.74e-05 0.0672 TCTCAAAA

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_13 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background --motif TCTCAAAA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/fimo_out_13 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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