# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018) # host: surya # when: Mon Jun 11 07:32:10 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.344 C 0.161 G 0.156 T 0.339 MOTIF AYTCYG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AYTCYG CRGART 320 52 1.3e-067 3.2e-063 # ACTCTG CAGAGT 143 18 6.7e-029 1.7e-024 # ATTCCG CGGAAT 99 7 7.0e-024 1.7e-019 # ACTCCG CGGAGT 37 2 8.5e-010 2.1e-005 # ATTCTG CAGAAT 72 27 1.4e-006 3.4e-002 letter-probability matrix: alength= 4 w= 6 nsites= 368 E= 3.2e-063 1.000000 0.000000 0.000000 0.000000 0.000000 0.519022 0.000000 0.480978 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.372283 0.000000 0.627717 0.000000 0.000000 1.000000 0.000000 MOTIF TAAATAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 342 71 1.5e-064 3.7e-060 # TAAATAAA TTTATTTA 342 71 1.5e-064 3.7e-060 letter-probability matrix: alength= 4 w= 8 nsites= 1703 E= 3.7e-060 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCTCAAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCTCAAAA TTTTGAGA 161 6 1.4e-045 3.3e-041 # TCTCAAAA TTTTGAGA 161 6 1.4e-045 3.3e-041 letter-probability matrix: alength= 4 w= 8 nsites= 162 E= 3.3e-041 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCYAGS DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCYAGS SCTRGG 213 53 3.6e-030 8.7e-026 # CCCAGC GCTGGG 107 18 1.7e-018 4.1e-014 # CCTAGG CCTAGG 66 11 1.4e-011 3.3e-007 # CCCAGG CCTGGG 59 14 2.1e-008 4.9e-004 # CCTAGC GCTAGG 29 13 8.7e-003 2.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 271 E= 8.7e-026 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.642066 0.000000 0.357934 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.520295 0.479705 0.000000 MOTIF AGAGCRAR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGAGCRAR YTYGCTCT 98 6 1.7e-024 4.0e-020 # AGAGCGAG CTCGCTCT 33 0 7.4e-011 1.7e-006 # AGAGCAAG CTTGCTCT 39 2 2.2e-010 5.1e-006 # AGAGCGAA TTCGCTCT 11 0 4.7e-004 1.1e+001 # AGAGCAAA TTTGCTCT 16 4 5.6e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 4.0e-020 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.000000 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 MOTIF AATTCCAC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AATTCCAC GTGGAATT 78 2 2.1e-022 4.8e-018 # AATTCCAC GTGGAATT 78 2 2.1e-022 4.8e-018 letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 4.8e-018 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCAARAGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCAARAGA TCTYTTGG 70 3 9.6e-019 2.2e-014 # CCAAGAGA TCTCTTGG 40 1 1.0e-011 2.3e-007 # CCAAAAGA TCTTTTGG 30 2 8.9e-008 2.0e-003 letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 2.2e-014 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF KGAAAACA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST KGAAAACA TGTTTTCM 62 7 5.5e-013 1.2e-008 # TGAAAACA TGTTTTCA 52 6 6.4e-011 1.4e-006 # GGAAAACA TGTTTTCC 11 1 3.1e-003 6.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 1.2e-008 0.000000 0.000000 0.174603 0.825397 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 158 70 5.0e-011 1.1e-006 # GAGAC GTCTC 104 42 2.4e-008 5.5e-004 # GAGTC GACTC 75 32 8.4e-006 1.9e-001 letter-probability matrix: alength= 4 w= 5 nsites= 178 E= 1.1e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.601124 0.000000 0.000000 0.398876 0.000000 1.000000 0.000000 0.000000 MOTIF ACYTGTA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACYTGTA TACARGT 24 1 6.2e-007 1.4e-002 # ACTTGTA TACAAGT 16 1 1.3e-004 2.8e+000 # ACCTGTA TACAGGT 8 0 3.8e-003 8.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 24 E= 1.4e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 36.11 seconds