# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:22 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF140.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:22 PDT 2018) # host: surya # when: Mon Jun 11 07:44:48 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.237 C 0.260 G 0.261 T 0.241 MOTIF GAGCGDA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GAGCGDA THCGCTC 121 16 1.1e-023 3.6e-019 # GAGCGGA TCCGCTC 67 8 1.1e-013 3.5e-009 # GAGCGTA TACGCTC 36 1 1.7e-010 5.3e-006 # GAGCGAA TTCGCTC 24 7 1.5e-003 4.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 133 E= 3.6e-019 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.203008 0.000000 0.526316 0.270677 1.000000 0.000000 0.000000 0.000000 MOTIF AATTGY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AATTGY RCAATT 115 27 5.2e-016 1.6e-011 # AATTGC GCAATT 82 17 1.6e-012 5.1e-008 # AATTGT ACAATT 37 12 1.8e-004 5.6e+000 letter-probability matrix: alength= 4 w= 6 nsites= 120 E= 1.6e-011 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.691667 0.000000 0.308333 MOTIF AAATAAAT DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAATAAAT ATTTATTT 81 14 8.3e-014 2.6e-009 # AAATAAAT ATTTATTT 81 14 8.3e-014 2.6e-009 letter-probability matrix: alength= 4 w= 8 nsites= 368 E= 2.6e-009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CYGTCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CYGTCTC GAGACRG 58 13 1.3e-008 4.0e-004 # CTGTCTC GAGACAG 35 7 5.4e-006 1.7e-001 # CCGTCTC GAGACGG 26 6 2.3e-004 7.0e+000 letter-probability matrix: alength= 4 w= 7 nsites= 61 E= 4.0e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.426230 0.000000 0.573770 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCGGCRGC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GCGGCRGC GCYGCCGC 26 1 1.6e-007 5.0e-003 # GCGGCGGC GCCGCCGC 16 1 1.3e-004 3.9e+000 # GCGGCAGC GCTGCCGC 12 0 2.3e-004 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 5.0e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.392857 0.000000 0.607143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCKCCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCKCCC GGGMGG 181 108 5.3e-007 1.6e-002 # CCTCCC GGGAGG 131 80 7.1e-005 2.2e+000 # CCGCCC GGGCGG 73 40 7.3e-004 2.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 238 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.348739 0.651261 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGCTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CAGCTC GAGCTG 92 40 9.8e-007 3.0e-002 # CAGCTC GAGCTG 92 40 9.8e-007 3.0e-002 letter-probability matrix: alength= 4 w= 6 nsites= 98 E= 3.0e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGCARA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GAGCARA TYTGCTC 64 22 1.5e-006 4.5e-002 # GAGCAGA TCTGCTC 38 13 2.4e-004 7.2e+000 # GAGCAAA TTTGCTC 26 9 2.6e-003 8.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 65 E= 4.5e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.415385 0.000000 0.584615 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 32.88 seconds