# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF133.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF133.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF133.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF133.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:09:28 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF133.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:09:28 PST 2017) # host: surya # when: Mon Dec 18 16:23:48 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.305 C 0.201 G 0.191 T 0.303 MOTIF GTMYAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GTMYAA TTRKAC 371 98 2.4e-061 6.9e-057 # GTATAA TTATAC 181 25 5.5e-036 1.6e-031 # GTCCAA TTGGAC 101 26 4.6e-013 1.3e-008 # GTCTAA TTAGAC 61 19 6.2e-007 1.8e-002 # GTACAA TTGTAC 71 35 1.7e-004 4.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 437 E= 6.9e-057 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.617849 0.382151 0.000000 0.000000 0.000000 0.423341 0.000000 0.576659 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGTTR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TATGTTR YAACATA 125 17 3.5e-024 9.5e-020 # TATGTTG CAACATA 93 12 2.8e-018 7.7e-014 # TATGTTA TAACATA 34 5 8.5e-007 2.3e-002 letter-probability matrix: alength= 4 w= 7 nsites= 127 E= 9.5e-020 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.267717 0.000000 0.732283 0.000000 MOTIF CCAATTM DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CCAATTM KAATTGG 91 11 2.2e-018 6.0e-014 # CCAATTA TAATTGG 76 9 1.6e-015 4.5e-011 # CCAATTC GAATTGG 15 2 1.1e-003 3.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 92 E= 6.0e-014 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.826087 0.173913 0.000000 0.000000 MOTIF CMAAGAAG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CMAAGAAG CTTCTTKG 77 8 1.7e-016 4.5e-012 # CAAAGAAG CTTCTTTG 64 6 2.8e-014 7.6e-010 # CCAAGAAG CTTCTTGG 13 2 3.5e-003 9.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 4.5e-012 0.000000 1.000000 0.000000 0.000000 0.841463 0.158537 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGAGYC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GGAGYC GRCTCC 71 14 2.9e-011 7.7e-007 # GGAGTC GACTCC 48 6 7.6e-010 2.1e-005 # GGAGCC GGCTCC 24 8 3.1e-003 8.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 75 E= 7.7e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 MOTIF AGAGAAAR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGAGAAAR YTTTCTCT 75 25 9.1e-008 2.4e-003 # AGAGAAAA TTTTCTCT 50 18 4.2e-005 1.1e+000 # AGAGAAAG CTTTCTCT 27 8 8.1e-004 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 2.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.645570 0.000000 0.354430 0.000000 MOTIF AGGCARAG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGGCARAG CTYTGCCT 28 3 1.8e-006 4.8e-002 # AGGCAAAG CTTTGCCT 17 2 3.3e-004 8.9e+000 # AGGCAGAG CTCTGCCT 11 1 3.1e-003 8.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.8e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.607143 0.000000 0.392857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 35.22 seconds