# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 CTCCAATTATACRTAT MEME-1 CTCCAATTATACRTAT 8.7e-211 1.2e-213 -490.30 0.0 89 485 432 534 0.18351 4.8e-216 242 1 DHAAAGAAGRTCCAAC MEME-2 DHAAAGAAGRTCCAAC 2.0e-154 2.7e-157 -360.53 0.0 53 485 313 526 0.10928 1.1e-159 242 1 TYTTTTYTBTYTTTYT MEME-3 TYTTTTYTBTYTTTYT 1.4e-012 1.9e-015 -33.88 0.0 159 485 285 569 0.32784 8.0e-018 242 1 TGTYYYACAKKTCWCTGAKKYTCTSTTHAWT MEME-4 TGTYYYACAKKTCWCTGAKKYTCTSTTHAWT 2.4e-016 3.2e-019 -42.60 0.0 104 470 170 387 0.22128 1.3e-021 234 1 TTTTCTTCTTCWGGGA MEME-5 TTTTCTTCTTCWGGGA 2.3e-008 3.1e-011 -24.20 0.0 133 485 218 512 0.27423 1.3e-013 242 1 GDYCRCTTGATRTTGTYCCACAGBTCWC MEME-6 GDYCRCTTGATRTTGTYCCACAGBTCWC 2.2e-033 3.0e-036 -81.80 0.0 71 473 63 76 0.15011 1.3e-038 236 1 AAGTGACAAATAKWGAAGATAG MEME-8 AAGTGACAAATAKWGAAGATAG 6.0e-014 8.1e-017 -37.06 0.0 89 479 53 84 0.18580 3.4e-019 239 1 KKCMCTTKTACRTRTGTTGKRC MEME-9 KKCMCTTKTACRTRTGTTGKRC 6.5e-159 8.7e-162 -370.86 0.0 95 479 320 375 0.19833 3.6e-164 239 1 ATACRCAAATCAATAAATGTGATACATCACATCAACAGAAYGA MEME-10 ATACRCAAATCAATAAATGTGATACATCACATCAACAGAAYGA 7.8e0000 1.0e-002 -4.56 0.0 110 458 7 7 0.24017 4.6e-005 228 2 GTMYAA DREME-1 GTMYAA 3.0e-098 4.0e-101 -231.18 0.0 61 495 250 461 0.12323 1.6e-103 247 2 TATGTTR DREME-2 TATGTTG 6.2e-076 8.2e-079 -179.80 0.0 68 494 166 250 0.13765 3.3e-081 246 2 CCAATTM DREME-3 CCAATTA 4.1e-075 5.5e-078 -177.89 0.0 106 494 171 204 0.21457 2.2e-080 246 2 CMAAGAAG DREME-4 CAAAGAAG 1.0e-025 1.3e-028 -64.18 0.0 59 493 68 123 0.11968 5.4e-031 246 2 GGAGYC DREME-5 GGAGYC 2.3e-007 3.1e-010 -21.91 0.0 147 495 118 225 0.29697 1.2e-012 247 2 AGAGAAAR DREME-6 AGAGAAAR 1.4e-007 1.8e-010 -22.41 0.0 145 493 101 186 0.29412 7.5e-013 246 2 AGGCARAG DREME-7 AGGCARAG 4.1e-006 5.4e-009 -19.03 0.0 51 493 97 467 0.10345 2.2e-011 246 3 M0177_1.02 (TWIST2)_(Mus_musculus)_(DBD_1.00) NMCATATGTN 5.1e-028 6.8e-031 -69.47 0.0 55 491 162 532 0.11202 2.8e-033 245 3 M0195_1.02 (TCF23)_(Mus_musculus)_(DBD_0.60) DMCAKMTGKH 2.6e-006 3.5e-009 -19.48 0.0 53 491 115 558 0.10794 1.4e-011 245 3 M0211_1.02 (MLXIP)_(Mus_musculus)_(DBD_0.82) BCACGTGK 8.4e0000 1.1e-002 -4.50 0.0 5 493 14 380 0.01014 4.6e-005 246 3 M0214_1.02 (TCF21)_(Mus_musculus)_(DBD_1.00) AACAKMTGK 1.8e-026 2.4e-029 -65.90 0.0 66 492 173 512 0.13415 9.8e-032 245 3 M0217_1.02 (NEUROG1)_(Mus_musculus)_(DBD_1.00) DCCATATGKB 7.4e-010 9.9e-013 -27.65 0.0 71 491 156 580 0.14460 4.0e-015 245 3 M0307_1.02 (ENSG00000250542)_(Mus_musculus)_(DBD_1.00) WWACGTWD 3.6e-008 4.8e-011 -23.76 0.0 25 493 57 370 0.05071 1.9e-013 246 3 M0428_1.02 (ZNF691)_(Mus_musculus)_(DBD_0.97) RKGAGYAC 2.6e0000 3.4e-003 -5.68 0.0 91 493 148 577 0.18458 1.4e-005 246 3 M0437_1.02 (ZNF32)_(Mus_musculus)_(DBD_0.99) TATRTATRT 5.0e-029 6.6e-032 -71.79 0.0 72 492 144 343 0.14634 2.7e-034 245 3 M0635_1.02 (DMRTC2)_(Mus_musculus)_(DBD_1.00) NAHATGTATHMWN 7.6e-015 1.0e-017 -39.14 0.0 52 488 137 568 0.10656 4.1e-020 243 3 M0894_1.02 LBX1 TTAATTAG 4.0e-041 5.3e-044 -99.65 0.0 107 493 273 552 0.21704 2.1e-046 246 3 M0896_1.02 VENTX TTAATTAG 5.2e-014 6.9e-017 -37.22 0.0 99 493 198 537 0.20081 2.8e-019 246 3 M0900_1.02 SHOX HTAATTRV 2.3e-027 3.0e-030 -67.97 0.0 111 493 257 571 0.22515 1.2e-032 246 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 3.2e-038 4.3e-041 -92.94 0.0 102 492 250 522 0.20732 1.8e-043 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 1.4e0000 1.8e-003 -6.32 0.0 69 493 105 491 0.13996 7.3e-006 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 6.7e-019 8.9e-022 -48.47 0.0 96 494 213 562 0.19433 3.6e-024 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 4.2e-033 5.6e-036 -81.17 0.0 102 492 253 559 0.20732 2.3e-038 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 6.1e-025 8.2e-028 -62.37 0.0 102 492 232 549 0.20732 3.3e-030 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 3.0e-008 4.0e-011 -23.93 0.0 190 492 296 546 0.38618 1.6e-013 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 6.9e-002 9.2e-005 -9.29 0.0 230 492 290 501 0.46748 3.8e-007 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATTA 2.4e-020 3.2e-023 -51.78 0.0 107 493 182 402 0.21704 1.3e-025 246 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTRD 1.0e-002 1.3e-005 -11.22 0.0 60 492 117 585 0.12195 5.5e-008 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 2.8e-016 3.7e-019 -42.45 0.0 110 492 211 511 0.22358 1.5e-021 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 4.2e0000 5.6e-003 -5.18 0.0 342 492 354 453 0.69512 2.3e-005 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 8.2e-007 1.1e-009 -20.63 0.0 201 493 285 509 0.40771 4.5e-012 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.9e-001 2.5e-004 -8.31 0.0 230 492 320 563 0.46748 1.0e-006 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 2.5e-017 3.4e-020 -44.84 0.0 99 491 211 552 0.20163 1.4e-022 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 6.6e-010 8.8e-013 -27.76 0.0 104 492 184 505 0.21138 3.6e-015 245 3 M1281_1.02 (NAIF1)_(Xenopus_tropicalis)_(DBD_0.71) NNTACGYHN 7.8e-001 1.0e-003 -6.87 0.0 12 492 23 304 0.02439 4.2e-006 245 3 M1418_1.02 C11orf9 TGGTACCA 4.6e-001 6.1e-004 -7.41 0.0 79 493 105 422 0.16024 2.5e-006 246 3 M1545_1.02 GMEB1 NNNRCGTNN 1.5e0000 2.1e-003 -6.19 0.0 28 492 43 372 0.05691 8.4e-006 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 8.9e-012 1.2e-014 -32.06 0.0 62 490 134 506 0.12653 4.9e-017 244 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 8.1e-001 1.1e-003 -6.83 0.0 121 491 195 594 0.24644 4.4e-006 245 3 M1592_1.02 (SOX3)_(Mus_musculus)_(DBD_1.00) NNNWCAAT 4.0e-003 5.3e-006 -12.15 0.0 141 493 128 292 0.28600 2.1e-008 246 3 M1594_1.02 (SOX12)_(Mus_musculus)_(DBD_1.00) HWTTGTYNNN 8.5e-004 1.1e-006 -13.69 0.0 145 491 242 595 0.29532 4.6e-009 245 3 M1601_1.02 (SOX11)_(Mus_musculus)_(DBD_1.00) WTTGTBNNN 6.3e-001 8.4e-004 -7.08 0.0 120 492 194 596 0.24390 3.4e-006 245 3 M1882_1.02 IRF1 AAANHGAAAGTGAAASTRRRN 1.0e-002 1.4e-005 -11.21 0.0 156 480 243 561 0.32500 5.7e-008 239 3 M2281_1.02 FOXH1 BNSAATCCACA 1.2e0000 1.6e-003 -6.45 0.0 386 490 456 528 0.78776 6.5e-006 244 3 M2306_1.02 POU2F2 HDNATTTGCATRW 6.0e-001 8.0e-004 -7.14 0.0 68 488 110 516 0.13934 3.3e-006 243 3 M2307_1.02 PRDM1 DRAAAGTGAAAGTRA 5.2e-009 7.0e-012 -25.69 0.0 188 486 319 590 0.38683 2.9e-014 242 3 M2313_1.02 (SOX6)_(Mus_musculus)_(DBD_1.00) CCWTTGTYYY 6.9e-004 9.2e-007 -13.90 0.0 143 491 237 587 0.29124 3.8e-009 245 3 M4453_1.02 BCL11A ADGRGGAASTGAAAV 3.8e-004 5.1e-007 -14.50 0.0 146 486 247 594 0.30041 2.1e-009 242 3 M4545_1.02 ZNF683 DRAAAGTGAAAGTKR 6.5e-005 8.7e-008 -16.26 0.0 212 486 329 582 0.43621 3.6e-010 242 3 M5284_1.02 ALX3 BNTAATTRRY 5.1e-016 6.8e-019 -41.83 0.0 99 491 205 541 0.20163 2.8e-021 245 3 M5294_1.02 BARHL2 NHTAAAYGNT 3.4e-004 4.6e-007 -14.60 0.0 87 491 154 550 0.17719 1.9e-009 245 3 M5304_1.02 BHLHA15 ACCATATGKT 1.8e-026 2.4e-029 -65.92 0.0 55 491 139 429 0.11202 9.6e-032 245 3 M5307_1.02 BHLHE22 NAVCATATGTTT 3.5e-030 4.6e-033 -74.46 0.0 55 489 143 417 0.11247 1.9e-035 244 3 M5308_1.02 BHLHE23 AMCATATGBT 1.1e-027 1.5e-030 -68.67 0.0 55 491 144 441 0.11202 6.1e-033 245 3 M5310_1.02 BSX NTAATBRS 1.0e-031 1.4e-034 -77.96 0.0 111 493 259 549 0.22515 5.6e-037 246 3 M5321_1.02 CLOCK AACACGTGTH 5.4e-016 7.2e-019 -41.77 0.0 71 491 137 419 0.14460 2.9e-021 245 3 M5339_1.02 DLX1 NNTAATTRNN 7.2e-004 9.7e-007 -13.85 0.0 109 491 185 561 0.22200 3.9e-009 245 3 M5342_1.02 DLX4 NTAATTRN 5.5e-044 7.4e-047 -106.22 0.0 107 493 286 575 0.21704 3.0e-049 246 3 M5343_1.02 DLX5 NTAATTRN 1.4e-038 1.9e-041 -93.78 0.0 95 493 256 571 0.19270 7.6e-044 246 3 M5344_1.02 DLX6 NTAATTRN 1.2e-043 1.6e-046 -105.46 0.0 105 493 281 571 0.21298 6.4e-049 246 3 M5388_1.02 EMX2 NYTAATTAVB 3.2e0000 4.2e-003 -5.47 0.0 63 491 101 519 0.12831 1.7e-005 245 3 M5390_1.02 EN1 VBTAATTRSB 6.3e-012 8.4e-015 -32.41 0.0 105 491 203 545 0.21385 3.4e-017 245 3 M5394_1.02 EN2 NNTAATTRVD 6.0e-025 8.0e-028 -62.40 0.0 95 491 221 543 0.19348 3.3e-030 245 3 M5414_1.02 ESX1 DNTAATTRRN 1.1e-019 1.5e-022 -50.24 0.0 95 491 214 561 0.19348 6.2e-025 245 3 M5480_1.02 GBX1 RBTAATTRGB 8.8e-012 1.2e-014 -32.07 0.0 105 491 191 505 0.21385 4.8e-017 245 3 M5481_1.02 GBX2 NYTAATTRSB 7.8e-016 1.0e-018 -41.41 0.0 105 491 213 542 0.21385 4.2e-021 245 3 M5493_1.02 GMEB2 KTRCGTAA 1.1e-002 1.4e-005 -11.14 0.0 51 493 70 346 0.10345 5.9e-008 246 3 M5502_1.02 GSX1 NBTAATKRSN 1.8e-016 2.5e-019 -42.85 0.0 121 491 241 558 0.24644 1.0e-021 245 3 M5503_1.02 GSX2 DYTAATKRVN 3.8e-016 5.1e-019 -42.12 0.0 105 491 219 560 0.21385 2.1e-021 245 3 M5518_1.02 HMX1 NDTTAATTGNT 8.2e-027 1.1e-029 -66.68 0.0 94 490 234 579 0.19184 4.5e-032 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 2.7e-031 3.7e-034 -76.99 0.0 94 490 247 592 0.19184 1.5e-036 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 1.8e-023 2.4e-026 -58.99 0.0 94 490 229 586 0.19184 9.9e-029 244 3 M5543_1.02 HOXB5 NHTAATKRNN 6.5e0000 8.7e-003 -4.74 0.0 83 491 138 588 0.16904 3.6e-005 245 3 M5583_1.02 ISL2 YTAAKTGC 3.2e-010 4.3e-013 -28.49 0.0 67 493 154 594 0.13590 1.7e-015 246 3 M5584_1.02 ISX YTAATCTAATTAR 4.5e0000 6.0e-003 -5.12 0.0 100 488 104 349 0.20492 2.5e-005 243 3 M5602_1.02 LHX9 YTAATTRN 3.3e-021 4.4e-024 -53.79 0.0 105 493 235 574 0.21298 1.8e-026 246 3 M5604_1.02 LMX1A YTAATTAA 1.3e-001 1.8e-004 -8.64 0.0 63 493 107 522 0.12779 7.2e-007 246 3 M5605_1.02 LMX1B TTAATTRN 3.6e-004 4.8e-007 -14.55 0.0 63 493 121 552 0.12779 2.0e-009 246 3 M5623_1.02 MEOX1 VSTAATTAHC 1.7e0000 2.3e-003 -6.08 0.0 105 491 156 529 0.21385 9.3e-006 245 3 M5631_1.02 MIXL1 NBTAATTRNN 1.3e-016 1.7e-019 -43.24 0.0 95 491 205 556 0.19348 6.8e-022 245 3 M5635_1.02 MNX1 TTTAATTRNH 3.2e-017 4.3e-020 -44.59 0.0 105 491 220 555 0.21385 1.8e-022 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 3.2e-002 4.3e-005 -10.06 0.0 87 483 118 415 0.18012 1.8e-007 241 3 M5652_1.02 NEUROD2 RMCATATGBY 4.6e-016 6.2e-019 -41.93 0.0 55 491 134 510 0.11202 2.5e-021 245 3 M5653_1.02 NEUROG2 RRCATATGTY 6.0e-024 8.0e-027 -60.08 0.0 67 491 157 457 0.13646 3.3e-029 245 3 M5690_1.02 OLIG1 AMCATATGKT 1.8e-036 2.3e-039 -88.95 0.0 67 491 169 415 0.13646 9.5e-042 245 3 M5691_1.02 OLIG2 AMCATATGKT 2.1e-025 2.8e-028 -63.43 0.0 53 491 145 484 0.10794 1.2e-030 245 3 M5693_1.02 OLIG3 AMCATATGBY 8.4e-025 1.1e-027 -62.05 0.0 53 491 149 510 0.10794 4.6e-030 245 3 M5771_1.02 RAX DYTAATTRRY 2.3e-014 3.0e-017 -38.03 0.0 95 491 200 559 0.19348 1.2e-019 245 3 M5772_1.02 RAX2 BTAATTRR 1.1e-025 1.4e-028 -64.14 0.0 95 493 228 565 0.19270 5.7e-031 246 3 M5807_1.02 SHOX2 YTAATTRR 1.2e-015 1.6e-018 -40.95 0.0 109 493 223 563 0.22110 6.7e-021 246 3 M5865_1.02 SPIC HAAAAGVGGAAGTA 1.2e-003 1.6e-006 -13.35 0.0 165 487 262 577 0.33881 6.5e-009 243 3 M5903_1.02 TCF7L1 AAAGATCAAAGG 6.6e-002 8.7e-005 -9.35 0.0 143 489 210 532 0.29243 3.6e-007 244 3 M5944_1.02 VAX1 YTAATTAN 1.2e-008 1.6e-011 -24.85 0.0 105 493 199 571 0.21298 6.6e-014 246 3 M5945_1.02 VAX2 YTAATTAN 2.6e-008 3.5e-011 -24.08 0.0 105 493 196 563 0.21298 1.4e-013 246 3 M5949_1.02 VSX1 YTAATTAN 2.9e-020 3.8e-023 -51.62 0.0 105 493 226 552 0.21298 1.6e-025 246 3 M5971_1.02 ZKSCAN3 TCGAGGYTAGMCCA 1.6e0000 2.1e-003 -6.16 0.0 69 487 46 172 0.14168 8.7e-006 243 3 M5979_1.02 ZNF75A TGTGGGAAAAGC 1.6e-002 2.1e-005 -10.76 0.0 55 489 95 485 0.11247 8.7e-008 244 3 M6119_1.02 SPI1 RAAAAGAGGAAGTGV 2.6e-001 3.4e-004 -7.99 0.0 144 486 214 546 0.29630 1.4e-006 242 3 M6140_1.02 AIRE HTTGGWWWWWWTGGDTWH 2.0e-001 2.7e-004 -8.22 0.0 61 483 115 586 0.12629 1.1e-006 241 3 M6154_1.02 ATF5 TAAGGRAGARGK 5.8e-010 7.7e-013 -27.90 0.0 137 489 254 590 0.28016 3.1e-015 244 3 M6157_1.02 BARX2 TYRWTAATKR 2.2e-002 2.9e-005 -10.44 0.0 63 491 115 550 0.12831 1.2e-007 245 3 M6185_1.02 CXXC1 CGKTGKY 1.5e0000 2.0e-003 -6.20 0.0 12 494 33 578 0.02429 8.2e-006 246 3 M6188_1.02 DLX2 ATAATTRB 2.8e-015 3.8e-018 -40.12 0.0 95 493 202 560 0.19270 1.5e-020 246 3 M6189_1.02 DLX3 GMTAATTRSW 1.7e-003 2.2e-006 -13.01 0.0 105 491 169 526 0.21385 9.2e-009 245 3 M6196_1.02 E2F7 WWDGGCGCGAAAM 1.3e-002 1.8e-005 -10.94 0.0 192 488 150 271 0.39344 7.3e-008 243 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 1.1e0000 1.4e-003 -6.54 0.0 134 488 209 583 0.27459 6.0e-006 243 3 M6259_1.02 GCM1 HWNATGCKGGYMBK 5.5e-005 7.3e-008 -16.43 0.0 67 487 126 527 0.13758 3.0e-010 243 3 M6269_1.02 HBP1 AYYCATTGA 7.2e0000 9.7e-003 -4.64 0.0 332 492 415 552 0.67480 4.0e-005 245 3 M6290_1.02 HOXA13 CCAATAAWAHC 1.0e-021 1.4e-024 -54.95 0.0 92 490 218 574 0.18776 5.6e-027 244 3 M6309_1.02 IRF3 GGAAAGBGAAASBRRRA 9.5e-004 1.3e-006 -13.58 0.0 166 484 263 572 0.34298 5.2e-009 241 3 M6311_1.02 IRF5 KAAAGGRAARCMAAAWSWGA 7.8e-001 1.0e-003 -6.87 0.0 145 481 161 393 0.30146 4.3e-006 240 3 M6313_1.02 IRF8 GRGRAAVTGAAAVYR 3.5e-002 4.7e-005 -9.97 0.0 140 486 230 595 0.28807 1.9e-007 242 3 M6328_1.02 LHX2 YRSDTTYAATWAG 5.7e-045 7.6e-048 -108.49 0.0 94 488 260 546 0.19262 3.1e-050 243 3 M6347_1.02 MSX2 TAATTNK 6.4e-014 8.5e-017 -37.00 0.0 96 494 202 572 0.19433 3.5e-019 246 3 M6376_1.02 NKX2-5 TYAAGTG 1.3e-002 1.7e-005 -10.97 0.0 68 494 129 592 0.13765 7.0e-008 246 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 1.7e-001 2.3e-004 -8.37 0.0 26 488 56 526 0.05328 9.6e-007 243 3 M6380_1.02 NOBOX HTAATTRSY 6.0e-022 8.0e-025 -55.48 0.0 70 492 180 556 0.14228 3.3e-027 245 3 M6382_1.02 NR1D1 WYTGACCTAYTTWT 8.6e-001 1.1e-003 -6.77 0.0 211 487 266 499 0.43326 4.7e-006 243 3 M6392_1.02 NR2F6 YYMNNTGAMCTTTGWCCY 4.1e0000 5.5e-003 -5.21 0.0 161 483 244 587 0.33333 2.3e-005 241 3 M6440_1.02 PRRX2 YTAATTR 1.3e-013 1.7e-016 -36.33 0.0 98 494 194 534 0.19838 6.8e-019 246 3 M6471_1.02 SOX13 YATTGTTY 1.7e0000 2.2e-003 -6.11 0.0 147 493 218 570 0.29817 9.0e-006 246 3 M6474_1.02 SOX18 GGAMRAVAACAAWKBDWDS 5.9e-002 7.8e-005 -9.46 0.0 142 482 212 536 0.29461 3.3e-007 240 3 M6476_1.02 SOX4 GAGAACAAAGSG 2.7e-002 3.7e-005 -10.22 0.0 141 489 223 573 0.28834 1.5e-007 244 3 M6477_1.02 SOX5 WAACAATR 7.8e-001 1.0e-003 -6.87 0.0 175 493 258 578 0.35497 4.2e-006 246 3 M6478_1.02 SOX9 ARAACAATRGR 1.6e-002 2.1e-005 -10.76 0.0 144 490 230 579 0.29388 8.7e-008 244 3 M6485_1.02 SPIB ARAAASMGGAAS 1.1e0000 1.5e-003 -6.51 0.0 213 489 309 586 0.43558 6.1e-006 244 3 M6500_1.02 TAL1 GACCATCTGTTS 7.7e-009 1.0e-011 -25.30 0.0 45 489 91 425 0.09202 4.2e-014 244 3 M6555_1.02 ZNF333 BKATAATGA 2.8e-007 3.7e-010 -21.71 0.0 66 492 127 506 0.13415 1.5e-012 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).