# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 GGGAGTATTTACACCA MEME-1 GGGAGTATTTACACCA 5.1e-147 6.9e-150 -343.46 0.0 115 485 284 301 0.23711 2.8e-152 242 1 AGYRTTTGCCAATTTC MEME-2 AGYRTTTGCCAATTTC 9.0e-135 1.2e-137 -315.26 0.0 79 485 262 332 0.16289 5.0e-140 242 1 CACACACACACACACACACACACACACACACACACACACACAC MEME-3 CACACACACACACACACACACACACACACACACACACACACAC 3.4e-017 4.6e-020 -44.54 0.0 60 458 40 57 0.13100 2.0e-022 228 2 GTGTAAAY DREME-1 GTGTAAAT 3.1e-138 4.1e-141 -323.25 0.0 111 493 267 288 0.22515 1.7e-143 246 2 AATYGGC DREME-2 AATTGGC 9.8e-095 1.3e-097 -223.08 0.0 86 494 189 233 0.17409 5.3e-100 246 2 AYTCCCAC DREME-3 ACTCCCAC 6.9e-029 9.2e-032 -71.46 0.0 99 493 81 109 0.20081 3.8e-034 246 2 RCTACMA DREME-4 RCTACMA 1.2e-030 1.7e-033 -75.47 0.0 152 494 158 220 0.30769 6.8e-036 246 2 AGCCMTG DREME-5 AGCCMTG 6.0e-007 8.0e-010 -20.94 0.0 102 494 83 195 0.20648 3.3e-012 246 2 GWGCCAR DREME-6 GWGCCAR 1.5e-013 2.1e-016 -36.12 0.0 46 494 84 317 0.09312 8.3e-019 246 2 AAACAYT DREME-7 AAACAYT 4.1e-019 5.5e-022 -48.95 0.0 120 494 123 216 0.24291 2.2e-024 246 2 TGAMATCA DREME-8 TGAMATCA 1.1e-016 1.4e-019 -43.38 0.0 169 493 101 135 0.34280 5.9e-022 246 2 AAAYGCT DREME-9 AAATGCT 8.5e-017 1.1e-019 -43.61 0.0 70 494 69 144 0.14170 4.7e-022 246 3 M0199_1.02 (HES2)_(Mus_musculus)_(DBD_0.83) NNNNGRCACGTGM 6.3e-005 8.4e-008 -16.29 0.0 74 488 141 556 0.15164 3.5e-010 243 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 7.8e-008 1.0e-010 -22.99 0.0 167 491 277 569 0.34012 4.3e-013 245 3 M0395_1.02 (ZNF187)_(Mus_musculus)_(DBD_0.88) GTACTAAT 2.8e-003 3.8e-006 -12.48 0.0 81 493 143 555 0.16430 1.5e-008 246 3 M0422_1.02 (ZIC5)_(Mus_musculus)_(DBD_0.99) SYRGGGGGTM 6.6e0000 8.9e-003 -4.73 0.0 15 491 37 574 0.03055 3.6e-005 245 3 M0718_1.02 FOXK1 DNRTMAACAH 4.5e-029 6.0e-032 -71.89 0.0 95 491 242 585 0.19348 2.5e-034 245 3 M0719_1.02 FOXG1 RTAAACAW 2.6e-007 3.5e-010 -21.76 0.0 151 493 245 546 0.30629 1.4e-012 246 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 6.5e-001 8.8e-004 -7.04 0.0 97 493 159 579 0.19675 3.6e-006 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 5.5e-032 7.4e-035 -78.59 0.0 93 491 243 579 0.18941 3.0e-037 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 4.1e-028 5.5e-031 -69.68 0.0 105 491 254 583 0.21385 2.2e-033 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 7.8e-004 1.0e-006 -13.78 0.0 100 492 160 514 0.20325 4.2e-009 245 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 1.9e-001 2.6e-004 -8.27 0.0 94 494 152 556 0.19028 1.0e-006 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 7.7e-001 1.0e-003 -6.88 0.0 96 492 152 553 0.19512 4.2e-006 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 5.6e0000 7.5e-003 -4.89 0.0 132 492 196 568 0.26829 3.1e-005 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 5.5e-004 7.4e-007 -14.12 0.0 95 493 131 418 0.19270 3.0e-009 246 3 M1110_1.02 (HHEX)_(Caenorhabditis_elegans)_(DBD_0.77) NNNYAATNNN 3.3e0000 4.4e-003 -5.42 0.0 55 491 19 60 0.11202 1.8e-005 245 3 M1581_1.02 (CIC)_(Mus_musculus)_(DBD_1.00) NNTGCTGACW 7.4e-001 9.9e-004 -6.92 0.0 315 491 418 573 0.64155 4.0e-006 245 3 M1628_1.02 (TBX10)_(Mus_musculus)_(DBD_0.87) AGGTGTGAANN 6.1e-009 8.2e-012 -25.52 0.0 88 490 179 579 0.17959 3.4e-014 244 3 M1863_1.02 FOXD1 GTAAACAW 4.8e-020 6.5e-023 -51.09 0.0 147 493 279 547 0.29817 2.6e-025 246 3 M1890_1.02 NFYA AGVSYKCTGATTGGTBSR 3.9e0000 5.3e-003 -5.25 0.0 421 483 368 393 0.87164 2.2e-005 241 3 M1970_1.02 NFIC TGCCAA 4.8e-081 6.4e-084 -191.56 0.0 81 495 304 587 0.16364 2.6e-086 247 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 1.2e-005 1.6e-008 -17.92 0.0 80 488 140 501 0.16393 6.8e-011 243 3 M2289_1.02 JUN DDRATGATGTMAT 2.8e-003 3.7e-006 -12.50 0.0 226 488 293 499 0.46311 1.5e-008 243 3 M2310_1.02 RUNX2 MAAACCACARAMMMM 1.6e-008 2.1e-011 -24.58 0.0 60 486 136 580 0.12346 8.7e-014 242 3 M2385_1.02 FOXP2 RWGTAAACAVR 1.3e-006 1.8e-009 -20.13 0.0 104 490 184 545 0.21224 7.4e-012 244 3 M2392_1.02 RFX2 GTYDCCATGGCAACVRVNN 1.1e0000 1.5e-003 -6.51 0.0 90 482 119 433 0.18672 6.2e-006 240 3 M4344_1.02 (ARID2)_(Saccharomyces_cerevisiae)_(DBD_0.26) SGTTGCYA 2.5e-005 3.3e-008 -17.22 0.0 55 493 116 567 0.11156 1.4e-010 246 3 M4473_1.02 PBX3 NBCDGCCAATSRGVR 5.3e-002 7.2e-005 -9.54 0.0 28 486 62 544 0.05761 3.0e-007 242 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 4.4e-021 5.9e-024 -53.48 0.0 96 486 224 574 0.19753 2.4e-026 242 3 M4636_1.02 THAP1 YTGCCCDBANYMAAGATGGCG 1.7e-006 2.3e-009 -19.90 0.0 126 480 133 298 0.26250 9.5e-012 239 3 M4692_1.02 SIX5 ACTACAAYTC 6.6e0000 8.8e-003 -4.73 0.0 77 491 104 454 0.15682 3.6e-005 245 3 M4840_1.02 (FEZF1)_(Drosophila_melanogaster)_(DBD_0.91) AAAWGMGCAWC 2.7e0000 3.6e-003 -5.62 0.0 94 490 144 541 0.19184 1.5e-005 244 3 M5209_1.02 (SP5)_(Drosophila_melanogaster)_(DBD_0.93) GKGGGCGKRKC 4.5e-006 6.1e-009 -18.92 0.0 102 490 176 530 0.20816 2.5e-011 244 3 M5284_1.02 ALX3 BNTAATTRGY 1.4e-013 1.9e-016 -36.21 0.0 97 491 192 528 0.19756 7.7e-019 245 3 M5293_1.02 ATF7 NKATGACGTCATHN 7.4e-002 9.9e-005 -9.22 0.0 221 487 166 274 0.45380 4.1e-007 243 3 M5307_1.02 BHLHE22 NAVCATATGTTT 3.1e0000 4.1e-003 -5.48 0.0 147 489 145 358 0.30061 1.7e-005 244 3 M5308_1.02 BHLHE23 AMCATATGBY 1.2e-002 1.6e-005 -11.04 0.0 163 491 179 386 0.33198 6.6e-008 245 3 M5323_1.02 CREB3 KGRTGACGTCAYNV 8.4e-002 1.1e-004 -9.10 0.0 217 487 166 280 0.44559 4.6e-007 243 3 M5339_1.02 DLX1 NNTAATTRNN 9.1e-002 1.2e-004 -9.01 0.0 67 491 115 538 0.13646 5.0e-007 245 3 M5342_1.02 DLX4 NTAATTRN 1.9e-009 2.6e-012 -26.68 0.0 95 493 185 561 0.19270 1.1e-014 246 3 M5343_1.02 DLX5 NTAATTRN 2.3e-002 3.1e-005 -10.39 0.0 85 493 146 561 0.17241 1.2e-007 246 3 M5344_1.02 DLX6 NTAATTRB 5.8e-009 7.8e-012 -25.58 0.0 77 493 158 558 0.15619 3.2e-014 246 3 M5390_1.02 EN1 VBTAATTRSB 4.7e-016 6.3e-019 -41.90 0.0 87 491 189 545 0.17719 2.6e-021 245 3 M5394_1.02 EN2 NNTAATTRVN 1.6e-004 2.1e-007 -15.37 0.0 77 491 140 541 0.15682 8.7e-010 245 3 M5414_1.02 ESX1 DNTAATTRRN 9.2e-007 1.2e-009 -20.51 0.0 81 491 157 559 0.16497 5.1e-012 245 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 1.0e0000 1.4e-003 -6.58 0.0 113 487 158 493 0.23203 5.7e-006 243 3 M5446_1.02 FOXD4L2 RTAAACA 3.8e-042 5.1e-045 -101.99 0.0 96 494 268 583 0.19433 2.1e-047 246 3 M5460_1.02 FOXL1 RTAAACA 1.4e-042 1.9e-045 -102.99 0.0 96 494 266 574 0.19433 7.6e-048 246 3 M5480_1.02 GBX1 RBTAATTRGB 2.0e-014 2.7e-017 -38.16 0.0 77 491 163 512 0.15682 1.1e-019 245 3 M5481_1.02 GBX2 NYTAATTRSB 1.4e-007 1.9e-010 -22.39 0.0 95 491 174 539 0.19348 7.7e-013 245 3 M5506_1.02 HES7 YGGCACGTGCCR 6.2e-009 8.3e-012 -25.51 0.0 73 489 81 233 0.14928 3.4e-014 244 3 M5512_1.02 HIC2 VSYGGGCAY 8.0e-008 1.1e-010 -22.96 0.0 48 492 113 575 0.09756 4.4e-013 245 3 M5520_1.02 HMX3 BNTTAAKTGNY 2.6e-006 3.5e-009 -19.48 0.0 76 490 150 565 0.15510 1.4e-011 244 3 M5581_1.02 IRX2 CWTGTCRTGTWN 1.1e-005 1.5e-008 -18.01 0.0 151 489 246 561 0.30879 6.2e-011 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 1.3e-008 1.8e-011 -24.76 0.0 111 489 209 572 0.22699 7.2e-014 244 3 M5592_1.02 KLF14 ARGKGGGCGTGGYM 3.5e0000 4.6e-003 -5.37 0.0 101 487 130 446 0.20739 1.9e-005 243 3 M5593_1.02 KLF16 GGGGGCGTGKC 2.8e-002 3.8e-005 -10.17 0.0 54 490 98 522 0.11020 1.6e-007 244 3 M5623_1.02 MEOX1 VSTAATTAHC 5.7e0000 7.6e-003 -4.87 0.0 75 491 116 528 0.15275 3.1e-005 245 3 M5631_1.02 MIXL1 NBTAATTRVN 3.3e-001 4.4e-004 -7.73 0.0 85 491 139 549 0.17312 1.8e-006 245 3 M5653_1.02 NEUROG2 RRCATATGTY 5.0e-003 6.7e-006 -11.91 0.0 137 491 169 418 0.27902 2.7e-008 245 3 M5660_1.02 NFIA TTGGCANNDTGCCAR 1.4e-049 1.8e-052 -119.12 0.0 72 486 180 364 0.14815 7.6e-055 242 3 M5662_1.02 NFIB TTGGCAHNDTGCCAR 4.1e-050 5.5e-053 -120.33 0.0 72 486 181 365 0.14815 2.3e-055 242 3 M5664_1.02 NFIX TTGGCANNNHGCCAR 4.9e-044 6.5e-047 -106.35 0.0 50 486 169 475 0.10288 2.7e-049 242 3 M5672_1.02 NOTO NBTAATTARN 2.2e0000 3.0e-003 -5.82 0.0 67 491 108 530 0.13646 1.2e-005 245 3 M5738_1.02 POU3F4 ATTWGCATA 2.6e-001 3.5e-004 -7.95 0.0 72 492 114 506 0.14634 1.4e-006 245 3 M5771_1.02 RAX DYTAATTRRY 5.6e-007 7.5e-010 -21.01 0.0 77 491 147 533 0.15682 3.1e-012 245 3 M5772_1.02 RAX2 BTAATTRR 2.9e-005 3.9e-008 -17.06 0.0 87 493 157 550 0.17647 1.6e-010 246 3 M5807_1.02 SHOX2 YTAATTRR 3.4e-001 4.5e-004 -7.70 0.0 87 493 138 537 0.17647 1.8e-006 246 3 M5856_1.02 SP8 RGKGGGCGTGKY 4.5e-006 6.0e-009 -18.92 0.0 107 489 186 543 0.21881 2.5e-011 244 3 M5873_1.02 TBR1 AGGTGTGAAA 3.3e-005 4.4e-008 -16.93 0.0 141 491 232 565 0.28717 1.8e-010 245 3 M5889_1.02 TBX21 GGTGTGAHWTCACACC 4.8e-011 6.4e-014 -30.38 0.0 117 485 143 317 0.24124 2.6e-016 242 3 M5949_1.02 VSX1 YTAATTAN 1.5e-002 2.1e-005 -10.79 0.0 87 493 139 514 0.17647 8.4e-008 246 3 M5962_1.02 ZBTB7C NTYGGTGGTCGY 6.1e-001 8.2e-004 -7.10 0.0 87 489 142 556 0.17791 3.4e-006 244 3 M5976_1.02 ZNF713 TTCGTGGCATTYTTCTA 1.1e-003 1.5e-006 -13.39 0.0 70 484 48 140 0.14463 6.3e-009 241 3 M5981_1.02 ZSCAN4 TTTTCAGKGTGTGCA 1.2e-016 1.6e-019 -43.25 0.0 104 486 165 380 0.21399 6.8e-022 242 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 1.6e-003 2.2e-006 -13.04 0.0 223 489 208 341 0.45603 8.9e-009 244 3 M6037_1.02 (IRX1)_(Mus_musculus)_(DBD_1.00) TTTKTCATGTWR 2.7e-004 3.6e-007 -14.84 0.0 73 489 130 520 0.14928 1.5e-009 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 2.1e-004 2.8e-007 -15.09 0.0 81 491 150 563 0.16497 1.1e-009 245 3 M6139_1.02 AHR KCACGCRAH 7.0e0000 9.3e-003 -4.67 0.0 362 492 424 523 0.73577 3.8e-005 245 3 M6152_1.02 ATF1 VTGACGTCAV 1.1e0000 1.5e-003 -6.50 0.0 221 491 259 469 0.45010 6.1e-006 245 3 M6171_1.02 CEBPD RRTKDBGCAAT 7.8e-001 1.0e-003 -6.86 0.0 76 490 132 582 0.15510 4.3e-006 244 3 M6173_1.02 CEBPG VAGATTGCAHAAT 5.1e-013 6.8e-016 -34.92 0.0 72 488 162 554 0.14754 2.8e-018 243 3 M6180_1.02 CREB1 RTGACGTMA 3.3e-002 4.5e-005 -10.02 0.0 192 492 267 535 0.39024 1.8e-007 245 3 M6181_1.02 CREM CRVTGACGTCA 1.4e-003 1.9e-006 -13.18 0.0 196 490 276 527 0.40000 7.8e-009 244 3 M6185_1.02 CXXC1 CGKTGKY 5.1e-003 6.9e-006 -11.89 0.0 66 494 124 572 0.13360 2.8e-008 246 3 M6186_1.02 DBP KVTTRCATAAB 9.1e0000 1.2e-002 -4.41 0.0 128 490 185 548 0.26122 5.0e-005 244 3 M6189_1.02 DLX3 GMTAATTRSW 2.5e-003 3.3e-006 -12.62 0.0 77 491 135 537 0.15682 1.3e-008 245 3 M6194_1.02 E2F5 SGCGCSAAAH 3.8e-001 5.0e-004 -7.59 0.0 33 491 41 273 0.06721 2.1e-006 245 3 M6210_1.02 ENO1 YDSMCACRTGSYB 3.1e0000 4.1e-003 -5.50 0.0 124 488 185 553 0.25410 1.7e-005 243 3 M6221_1.02 ETS2 VMVGGAAGTKS 4.2e-002 5.6e-005 -9.78 0.0 56 490 109 587 0.11429 2.3e-007 244 3 M6224_1.02 ETV7 KCMHCAGGAAGTRACDY 6.8e-003 9.1e-006 -11.60 0.0 56 484 92 445 0.11570 3.8e-008 241 3 M6246_1.02 FOXO3 MKGWAAACAARYM 1.1e-001 1.5e-004 -8.79 0.0 110 488 179 568 0.22541 6.3e-007 243 3 M6262_1.02 GFI1B WGCMGTGATTT 1.4e-009 1.9e-012 -26.97 0.0 106 490 201 560 0.21633 7.9e-015 244 3 M6263_1.02 GFI1 RCWSTGATTT 2.2e0000 2.9e-003 -5.83 0.0 137 491 205 568 0.27902 1.2e-005 245 3 M6274_1.02 HIC1 GGGKTGCCC 9.5e-004 1.3e-006 -13.57 0.0 68 492 125 541 0.13821 5.2e-009 245 3 M6278_1.02 HLTF KANKGCTGSMAM 3.8e0000 5.1e-003 -5.28 0.0 51 489 94 587 0.10429 2.1e-005 244 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 7.9e-005 1.1e-007 -16.05 0.0 172 486 241 492 0.35391 4.4e-010 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 3.3e0000 4.5e-003 -5.41 0.0 179 487 223 484 0.36756 1.8e-005 243 3 M6292_1.02 HOXA5 CATTAATYAR 1.7e-002 2.3e-005 -10.68 0.0 91 491 142 504 0.18534 9.4e-008 245 3 M6315_1.02 ISL1 SYTAATR 3.9e-005 5.2e-008 -16.77 0.0 74 494 136 536 0.14980 2.1e-010 246 3 M6326_1.02 KLF8 CAGGGKGTG 5.9e-003 7.9e-006 -11.75 0.0 102 492 166 540 0.20732 3.2e-008 245 3 M6332_1.02 MAF KTGCTGAC 6.6e-001 8.9e-004 -7.03 0.0 315 493 425 585 0.63895 3.6e-006 246 3 M6344_1.02 MEIS2 KGACAVCTGTCAA 7.4e0000 9.9e-003 -4.62 0.0 132 488 175 496 0.27049 4.1e-005 243 3 M6361_1.02 NFATC1 AWGGAAWTTTCCD 2.0e-001 2.6e-004 -8.25 0.0 78 488 104 413 0.15984 1.1e-006 243 3 M6373_1.02 NFYC YAGCCAATSAGVGS 4.6e-005 6.2e-008 -16.60 0.0 129 487 212 546 0.26489 2.6e-010 243 3 M6402_1.02 OVOL1 KGTAACKGT 2.8e-003 3.8e-006 -12.47 0.0 136 492 211 544 0.27642 1.6e-008 245 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 2.3e0000 3.1e-003 -5.79 0.0 120 486 183 560 0.24691 1.3e-005 242 3 M6419_1.02 PKNOX1 HATCARTCAABYB 3.6e0000 4.9e-003 -5.32 0.0 128 488 184 535 0.26230 2.0e-005 243 3 M6423_1.02 POU2F1 ATTTGCATD 6.7e0000 9.0e-003 -4.71 0.0 72 492 120 573 0.14634 3.7e-005 245 3 M6441_1.02 PTF1A KSRCASSTGTKSWNTTYCCYG 4.6e0000 6.2e-003 -5.08 0.0 60 480 95 502 0.12500 2.6e-005 239 3 M6453_1.02 RFX3 TYRCCATGGYAACV 1.1e-009 1.5e-012 -27.23 0.0 89 487 143 419 0.18275 6.2e-015 243 3 M6457_1.02 RUNX1 WAACCACARW 3.7e-009 4.9e-012 -26.03 0.0 67 491 150 588 0.13646 2.0e-014 245 3 M6459_1.02 RUNX3 AACCRCAAAMCCCV 4.7e0000 6.4e-003 -5.06 0.0 295 487 349 504 0.60575 2.6e-005 243 3 M6473_1.02 SOX17 CAAMAATNHHCATTGTCS 1.9e-004 2.5e-007 -15.18 0.0 75 483 104 373 0.15528 1.1e-009 241 3 M6499_1.02 RBPJ CGTGGGAAM 8.7e0000 1.2e-002 -4.45 0.0 98 492 154 577 0.19919 4.8e-005 245 3 M6513_1.02 TFAP4 RYCAGCTGYGG 2.1e0000 2.8e-003 -5.89 0.0 326 490 370 490 0.66531 1.1e-005 244 3 M6525_1.02 TLX1 YGBYAAKDWGS 3.2e-012 4.2e-015 -33.09 0.0 58 490 142 575 0.11837 1.7e-017 244 3 M6534_1.02 VSX2 WDAGCTAATTA 1.3e-005 1.7e-008 -17.90 0.0 96 490 146 449 0.19592 6.9e-011 244 3 M6537_1.02 YBX1 BSKGATTSSCY 2.2e-001 3.0e-004 -8.12 0.0 54 490 102 580 0.11020 1.2e-006 244 3 M6540_1.02 ZBTB4 CAATRGYGDTDGYGR 3.5e-005 4.7e-008 -16.86 0.0 104 486 171 509 0.21399 2.0e-010 242 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).