# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF112.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF112.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF112.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF112.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:10 PDT 2018) # negatives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF112.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:10 PDT 2018) # host: wotan # when: Thu May 10 17:49:36 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.270 C 0.226 G 0.236 T 0.269 MOTIF GTGTAAAY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GTGTAAAY RTTTACAC 253 5 9.1e-083 2.6e-078 # GTGTAAAT ATTTACAC 222 2 1.3e-074 3.7e-070 # GTGTAAAC GTTTACAC 32 3 1.5e-007 4.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 254 E= 2.6e-078 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125984 0.000000 0.874016 MOTIF AATYGGC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AATYGGC GCCRATT 205 14 4.2e-053 1.2e-048 # AATTGGC GCCAATT 196 14 7.9e-050 2.2e-045 # AATCGGC GCCGATT 11 0 4.7e-004 1.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 231 E= 1.2e-048 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.051948 0.000000 0.948052 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AYTCCCAC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AYTCCCAC GTGGGART 78 4 3.4e-020 9.3e-016 # ACTCCCAC GTGGGAGT 61 1 2.9e-018 7.9e-014 # ATTCCCAC GTGGGAAT 17 3 1.2e-003 3.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 9.3e-016 1.000000 0.000000 0.000000 0.000000 0.000000 0.784810 0.000000 0.215190 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RCTACMA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST RCTACMA TKGTAGY 127 26 1.4e-019 3.8e-015 # GCTACAA TTGTAGC 51 6 1.2e-010 3.3e-006 # GCTACCA TGGTAGC 35 2 3.2e-009 9.0e-005 # ACTACAA TTGTAGT 30 11 1.9e-003 5.1e+001 # ACTACCA TGGTAGT 22 7 3.7e-003 1.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 139 E= 3.8e-015 0.381295 0.000000 0.618705 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.582734 0.417266 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCCMTG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGCCMTG CAKGGCT 87 14 2.2e-015 5.9e-011 # AGCCCTG CAGGGCT 50 6 2.2e-010 6.1e-006 # AGCCATG CATGGCT 38 8 3.1e-006 8.6e-002 letter-probability matrix: alength= 4 w= 7 nsites= 90 E= 5.9e-011 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.433333 0.566667 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GWGCCAR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GWGCCAR YTGGCWC 124 39 2.5e-013 6.7e-009 # GTGCCAA TTGGCAC 47 11 5.8e-007 1.6e-002 # GTGCCAG CTGGCAC 45 14 2.1e-005 5.9e-001 # GAGCCAG CTGGCTC 33 9 1.1e-004 2.9e+000 # GAGCCAA TTGGCTC 22 8 7.4e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 166 E= 6.7e-009 0.000000 0.000000 1.000000 0.000000 0.343373 0.000000 0.000000 0.656627 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.463855 0.000000 0.536145 0.000000 MOTIF AAACAYT DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AAACAYT ARTGTTT 83 21 5.8e-011 1.6e-006 # AAACACT AGTGTTT 42 6 2.9e-008 7.8e-004 # AAACATT AATGTTT 45 15 4.5e-005 1.2e+000 letter-probability matrix: alength= 4 w= 7 nsites= 87 E= 1.6e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.482759 0.000000 0.517241 0.000000 0.000000 0.000000 1.000000 MOTIF TGAMATCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TGAMATCA TGATKTCA 43 6 1.6e-008 4.3e-004 # TGACATCA TGATGTCA 27 4 1.4e-005 3.7e-001 # TGAAATCA TGATTTCA 18 2 1.8e-004 4.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 4.3e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.360000 0.640000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAYGCT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AAAYGCT AGCRTTT 43 9 6.2e-007 1.7e-002 # AAATGCT AGCATTT 37 9 1.5e-005 3.9e-001 # AAACGCT AGCGTTT 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 45 E= 1.7e-002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.177778 0.000000 0.822222 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 # Stopping reason: E-value threshold exceeded # Running time: 136.71 seconds