Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
AATAAATA | 8 | AATAAATA |
GAGDC | 5 | GAGAC |
ACASAG | 6 | ACAGAG |
CATCTC | 6 | CATCTC |
ASCCAGG | 7 | ACCCAGG |
AGAGYGA | 7 | AGAGTGA |
CACCACB | 7 | CACCACC |
GCMAC | 5 | GCCAC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.268 C 0.232 G 0.232 T 0.268
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AGAGYGA | DREME-6 | chr20 | + | 4613230 | 4613236 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | - | 5689492 | 5689498 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | + | 6404689 | 6404695 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr17 | + | 8093845 | 8093851 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr3 | + | 9939119 | 9939125 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | - | 11533288 | 11533294 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr16 | - | 14096105 | 14096111 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr17 | + | 16406773 | 16406779 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | - | 18106599 | 18106605 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr16 | + | 21515157 | 21515163 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr8 | - | 22450864 | 22450870 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr18 | + | 23654246 | 23654252 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chrX | + | 23771933 | 23771939 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 24593850 | 24593856 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr10 | + | 25877024 | 25877030 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr16 | + | 30052678 | 30052684 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr16 | - | 30052953 | 30052959 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr16 | - | 30446044 | 30446050 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr18 | - | 31125511 | 31125517 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr21 | - | 31990564 | 31990570 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr21 | - | 32695875 | 32695881 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr6 | + | 32699890 | 32699896 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr21 | + | 32771944 | 32771950 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr21 | + | 32771968 | 32771974 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr21 | - | 32772025 | 32772031 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr6 | + | 33378121 | 33378127 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr20 | - | 34026431 | 34026437 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr19 | - | 34234925 | 34234931 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr21 | - | 35002456 | 35002462 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr10 | - | 35197481 | 35197487 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 35380356 | 35380362 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr17 | + | 35567495 | 35567501 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | + | 37918852 | 37918858 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | + | 38374639 | 38374645 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr19 | - | 39794459 | 39794465 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr19 | + | 40301133 | 40301139 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | - | 40301369 | 40301375 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr19 | + | 40346424 | 40346430 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr19 | + | 40795150 | 40795156 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr3 | + | 41158342 | 41158348 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr21 | - | 42149384 | 42149390 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr12 | + | 42215906 | 42215912 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr17 | + | 44819639 | 44819645 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr11 | - | 46245107 | 46245113 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr19 | + | 46797290 | 46797296 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr2 | - | 47176491 | 47176497 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr11 | + | 47519461 | 47519467 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr12 | - | 48866641 | 48866647 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr18 | - | 48873793 | 48873799 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 52123917 | 52123923 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 52847699 | 52847705 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 52847898 | 52847904 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 52879790 | 52879796 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr6 | - | 53687454 | 53687460 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr15 | + | 55817771 | 55817777 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr3 | + | 61732690 | 61732696 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr17 | + | 61838525 | 61838531 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr15 | + | 65610915 | 65610921 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr10 | - | 69304336 | 69304342 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr12 | - | 69477769 | 69477775 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr16 | - | 70350906 | 70350912 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr15 | - | 70866176 | 70866182 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr16 | + | 71809068 | 71809074 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chrX | + | 72181839 | 72181845 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chrX | - | 72720039 | 72720045 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr6 | + | 73461515 | 73461521 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr10 | - | 73883218 | 73883224 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr15 | - | 75217989 | 75217995 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 76779284 | 76779290 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr17 | - | 77233887 | 77233893 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr17 | + | 80810029 | 80810035 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr6 | + | 89778867 | 89778873 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr12 | - | 89964677 | 89964683 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 95920339 | 95920345 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 96818954 | 96818960 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr13 | - | 98581046 | 98581052 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr10 | + | 102387789 | 102387795 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr14 | - | 102639562 | 102639568 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 109425769 | 109425775 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr11 | - | 123279459 | 123279465 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | + | 143105358 | 143105364 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr5 | - | 149556415 | 149556421 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chrX | - | 153937465 | 153937471 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 154188654 | 154188660 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 155065761 | 155065767 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 155225340 | 155225346 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | + | 155244796 | 155244802 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 155244802 | 155244808 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 155244810 | 155244816 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 155244824 | 155244830 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 155244832 | 155244838 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 155244840 | 155244846 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | - | 155575851 | 155575857 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | + | 160124590 | 160124596 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | - | 173824402 | 173824408 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 175559339 | 175559345 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 177057849 | 177057855 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr5 | - | 177345796 | 177345802 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr3 | + | 180989689 | 180989695 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | + | 183081529 | 183081535 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr4 | + | 190112087 | 190112093 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr2 | - | 190850862 | 190850868 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr3 | + | 193970417 | 193970423 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | + | 225654906 | 225654912 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | + | 226199517 | 226199523 | 5.57e-05 | 0.297 | agagcga |
AGAGYGA | DREME-6 | chr1 | - | 226221772 | 226221778 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 229919737 | 229919743 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 235364414 | 235364420 | 5.57e-05 | 0.297 | AGAGCGA |
AGAGYGA | DREME-6 | chr1 | - | 241040529 | 241040535 | 5.57e-05 | 0.297 | AGAGCGA |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_20 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif AGAGYGA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_20 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.