# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:01 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF101.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:03 PDT 2018) # host: wotan # when: Thu May 10 17:26:48 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.346 C 0.163 G 0.163 T 0.328 MOTIF AATAAATA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AATAAATA TATTTATT 436 84 4.7e-100 1.3e-095 # AATAAATA TATTTATT 436 84 4.7e-100 1.3e-095 letter-probability matrix: alength= 4 w= 8 nsites= 2184 E= 1.3e-095 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGDC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGDC GHCTC 423 125 9.3e-070 2.6e-065 # GAGAC GTCTC 297 51 3.1e-059 8.5e-055 # GAGTC GACTC 228 43 6.3e-040 1.7e-035 # GAGGC GCCTC 88 58 5.1e-003 1.4e+002 letter-probability matrix: alength= 4 w= 5 nsites= 644 E= 2.6e-065 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.552795 0.000000 0.163043 0.284161 0.000000 1.000000 0.000000 0.000000 MOTIF ACASAG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACASAG CTSTGT 182 12 1.0e-046 2.7e-042 # ACAGAG CTCTGT 156 7 1.1e-042 2.9e-038 # ACACAG CTGTGT 33 5 1.5e-006 3.9e-002 letter-probability matrix: alength= 4 w= 6 nsites= 190 E= 2.7e-042 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.178947 0.821053 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CATCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATCTC GAGATG 89 8 5.3e-020 1.3e-015 # CATCTC GAGATG 89 8 5.3e-020 1.3e-015 letter-probability matrix: alength= 4 w= 6 nsites= 89 E= 1.3e-015 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ASCCAGG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ASCCAGG CCTGGST 41 3 4.4e-010 1.1e-005 # ACCCAGG CCTGGGT 26 1 1.6e-007 4.1e-003 # AGCCAGG CCTGGCT 15 2 1.1e-003 2.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 41 E= 1.1e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.634146 0.365854 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGAGYGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGAGYGA TCRCTCT 36 2 1.7e-009 4.2e-005 # AGAGTGA TCACTCT 21 0 4.0e-007 1.0e-002 # AGAGCGA TCGCTCT 17 2 3.3e-004 8.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 42 E= 4.2e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACCACB DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CACCACB VGTGGTG 29 1 2.1e-008 5.2e-004 # CACCACC GGTGGTG 12 0 2.3e-004 5.8e+000 # CACCACT AGTGGTG 11 1 3.1e-003 7.7e+001 # CACCACG CGTGGTG 8 0 3.8e-003 9.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 29 E= 5.2e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.379310 0.275862 0.344828 MOTIF GCMAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GCMAC GTKGC 142 79 1.7e-006 4.3e-002 # GCCAC GTGGC 83 48 7.8e-004 2.0e+001 # GCAAC GTTGC 73 44 3.1e-003 7.8e+001 letter-probability matrix: alength= 4 w= 5 nsites= 168 E= 4.3e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.470238 0.529762 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 107.16 seconds