# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 15:52:06 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF10.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 15:52:08 PST 2017) # host: wotan # when: Mon Dec 18 16:15:11 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.240 C 0.260 G 0.259 T 0.240 MOTIF AKCAGKTG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AKCAGKTG CAMCTGMT 317 11 3.5e-103 1.1e-098 # ATCAGTTG CAACTGAT 168 3 5.1e-052 1.6e-047 # ATCAGGTG CACCTGAT 80 2 4.8e-023 1.5e-018 # AGCAGGTG CACCTGCT 56 5 9.2e-013 2.8e-008 # AGCAGTTG CAACTGCT 24 1 6.2e-007 1.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 335 E= 1.1e-098 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.259701 0.740299 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.420896 0.579104 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGCCCACC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGCCCACC GGTGGGCC 208 7 9.0e-062 2.7e-057 # GGCCCACC GGTGGGCC 208 7 9.0e-062 2.7e-057 letter-probability matrix: alength= 4 w= 8 nsites= 211 E= 2.7e-057 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGADTA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTGADTA TAHTCAG 110 14 8.3e-022 2.5e-017 # CTGATTA TAATCAG 54 6 1.8e-011 5.4e-007 # CTGAATA TATTCAG 37 5 1.4e-007 4.3e-003 # CTGAGTA TACTCAG 27 3 3.3e-006 1.0e-001 letter-probability matrix: alength= 4 w= 7 nsites= 125 E= 2.5e-017 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.320000 0.000000 0.224000 0.456000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAGGCCTK DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AAGGCCTK MAGGCCTT 57 3 8.9e-015 2.7e-010 # AAGGCCTT AAGGCCTT 36 1 1.7e-010 5.0e-006 # AAGGCCTG CAGGCCTT 21 2 2.9e-005 8.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 2.7e-010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.368421 0.631579 MOTIF GRTGA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GRTGA TCAYC 336 210 1.8e-013 5.2e-009 # GATGA TCATC 199 106 4.2e-010 1.3e-005 # GGTGA TCACC 189 133 1.7e-004 4.9e+000 letter-probability matrix: alength= 4 w= 5 nsites= 475 E= 5.2e-009 0.000000 0.000000 1.000000 0.000000 0.507368 0.000000 0.492632 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAACAAAR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GAACAAAR YTTTGTTC 46 2 1.8e-012 5.3e-008 # GAACAAAA TTTTGTTC 34 1 6.7e-010 1.9e-005 # GAACAAAG CTTTGTTC 12 1 1.6e-003 4.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 5.3e-008 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.739130 0.000000 0.260870 0.000000 MOTIF CASATTA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CASATTA TAATSTG 65 10 6.8e-012 2.0e-007 # CACATTA TAATGTG 52 6 6.4e-011 1.8e-006 # CAGATTA TAATCTG 22 4 2.3e-004 6.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 74 E= 2.0e-007 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.702703 0.297297 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTTAARW DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TTTAARW WYTTAAA 65 17 1.6e-008 4.6e-004 # TTTAAGA TCTTAAA 15 2 1.1e-003 3.1e+001 # TTTAAAA TTTTAAA 23 7 2.3e-003 6.7e+001 # TTTAAGT ACTTAAA 21 6 2.7e-003 7.7e+001 # TTTAAAT ATTTAAA 16 4 5.6e-003 1.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 69 E= 4.6e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.478261 0.000000 0.521739 0.000000 0.507246 0.000000 0.000000 0.492754 MOTIF TTAMTCAA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST TTAMTCAA TTGAKTAA 29 1 2.1e-008 5.9e-004 # TTACTCAA TTGAGTAA 22 1 2.4e-006 6.8e-002 # TTAATCAA TTGATTAA 7 0 7.7e-003 2.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 5.9e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.241379 0.758621 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGACTGA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGACTGA TCAGTCT 43 8 2.0e-007 5.8e-003 # AGACTGA TCAGTCT 43 8 2.0e-007 5.8e-003 letter-probability matrix: alength= 4 w= 7 nsites= 44 E= 5.8e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGCTK DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CTGCTK MAGCAG 159 90 5.7e-007 1.6e-002 # CTGCTT AAGCAG 86 39 5.6e-006 1.6e-001 # CTGCTG CAGCAG 84 53 3.2e-003 8.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 191 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.502618 0.497382 # Stopping reason: E-value threshold exceeded # Running time: 138.49 seconds