Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CAGYRGG 7 CAGCAGG
DTAAA 5 ATAAA
GGRAA 5 GGGAA
CCTGGKGA 8 CCTGGGGA

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.212 C 0.288 G 0.288 T 0.212


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CCTGGKGA DREME-4 chr19 + 867511 867518 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr16 - 1070032 1070039 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr6 - 1388232 1388239 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr16 + 1408547 1408554 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 1907528 1907535 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr16 - 2148033 2148040 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 3403151 3403158 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr4 - 3837060 3837067 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 3890300 3890307 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 5332325 5332332 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 5340474 5340481 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 6331804 6331811 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 9145182 9145189 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr18 + 11850006 11850013 2.57e-05 0.148 cctgggga
CCTGGKGA DREME-4 chr1 + 11944570 11944577 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr3 + 13400337 13400344 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr3 - 13400471 13400478 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr3 + 14439979 14439986 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 16146596 16146603 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 - 16929717 16929724 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 16929869 16929876 2.57e-05 0.148 cctgggga
CCTGGKGA DREME-4 chr22 - 17171241 17171248 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr22 - 17266886 17266893 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 17306575 17306582 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr19 + 18451213 18451220 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 21286396 21286403 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr13 - 21812325 21812332 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr22 - 29267046 29267053 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 29597812 29597819 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr22 - 29702414 29702421 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr22 + 29702496 29702503 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 32818102 32818109 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr19 - 33268581 33268588 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr19 - 33803115 33803122 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 34756842 34756849 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr19 + 35049164 35049171 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 - 39231256 39231263 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr13 + 39768282 39768289 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr19 - 41931489 41931496 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr22 - 43290538 43290545 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr6 + 43824086 43824093 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 + 44598697 44598704 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 47884281 47884288 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 - 50000556 50000563 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr7 - 50963113 50963120 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr13 + 51148609 51148616 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 + 57124834 57124841 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 - 57125028 57125035 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 - 57198459 57198466 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr10 - 58967663 58967670 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 + 63224968 63224975 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 + 63626393 63626400 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr20 + 63626437 63626444 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr15 - 70120351 70120358 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr15 - 70495470 70495477 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 72420051 72420058 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 - 73639251 73639258 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 76029446 76029453 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 76547318 76547325 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 76547595 76547602 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr17 + 77365806 77365813 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 - 77379050 77379057 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr10 + 79346586 79346593 2.57e-05 0.148 cctgggga
CCTGGKGA DREME-4 chr10 + 79346847 79346854 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr16 + 85397732 85397739 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr16 - 85523782 85523789 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 - 93825202 93825209 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr9 - 98172673 98172680 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 + 100473477 100473484 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr15 - 101121965 101121972 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 + 105165430 105165437 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 - 105213135 105213142 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 - 105213319 105213326 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr14 - 105470950 105470957 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 - 108131639 108131646 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 + 108584188 108584195 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 - 111409862 111409869 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 - 111410097 111410104 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 119327846 119327853 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 - 124481579 124481586 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 - 131313706 131313713 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr7 - 131897390 131897397 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr12 + 132316828 132316835 2.57e-05 0.148 cctgggga
CCTGGKGA DREME-4 chr3 + 135456361 135456368 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr9 - 136143682 136143689 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 142432561 142432568 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr8 + 143499741 143499748 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr8 - 143499809 143499816 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 149805901 149805908 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 150511580 150511587 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 + 151961696 151961703 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 155244662 155244669 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr5 - 169081035 169081042 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 - 203153697 203153704 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 - 226428853 226428860 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 - 227794215 227794222 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 231596436 231596443 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 - 231596687 231596694 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr2 + 241505365 241505372 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 243114125 243114132 2.57e-05 0.148 CCTGGGGA
CCTGGKGA DREME-4 chr1 + 6331972 6331979 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr8 + 11677083 11677090 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr10 + 13505244 13505251 4.46e-05 0.186 cctggtga
CCTGGKGA DREME-4 chr19 + 13616101 13616108 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 - 17922994 17923001 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr1 + 18938852 18938859 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr22 + 19975164 19975171 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 - 21286201 21286208 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 + 21723245 21723252 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr13 + 21812673 21812680 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr20 + 23325345 23325352 4.46e-05 0.186 CCtggtga
CCTGGKGA DREME-4 chr17 - 34756926 34756933 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr22 + 36586016 36586023 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr22 + 37340507 37340514 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr8 + 38567336 38567343 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr6 - 39060004 39060011 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr8 + 41882221 41882228 4.46e-05 0.186 cctggtga
CCTGGKGA DREME-4 chr21 - 45781032 45781039 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr22 - 46774026 46774033 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 - 48504029 48504036 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 + 50178547 50178554 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr15 - 65954584 65954591 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr15 - 70495375 70495382 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 - 74245540 74245547 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr17 + 76547368 76547375 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr15 - 78395525 78395532 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr1 + 91428571 91428578 4.46e-05 0.186 cctggtga
CCTGGKGA DREME-4 chr14 + 93892197 93892204 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr14 - 99606483 99606490 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr12 - 108131836 108131843 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr12 - 117086921 117086928 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr11 - 119992698 119992705 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr2 + 120826032 120826039 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr9 + 121453668 121453675 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr9 + 121453701 121453708 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr6 - 154615720 154615727 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr1 + 229694613 229694620 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr1 - 233113136 233113143 4.46e-05 0.186 CCTGGTGA
CCTGGKGA DREME-4 chr16 - 67386 67393 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 - 3890394 3890401 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr16 - 4529412 4529419 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr1 - 6199292 6199299 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 - 21723447 21723454 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr22 - 23431529 23431536 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr2 - 24833156 24833163 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr22 - 25942990 25942997 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr8 - 29126772 29126779 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr1 - 32817757 32817764 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr20 - 32894152 32894159 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 33280106 33280113 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 33280229 33280236 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 33280329 33280336 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr19 - 33414183 33414190 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr19 - 37988854 37988861 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr19 - 40921571 40921578 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 - 41124067 41124074 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 - 43656916 43656923 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 43707883 43707890 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 43762388 43762395 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 - 44767944 44767951 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr13 - 51263165 51263172 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr15 - 69826287 69826294 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr3 - 72316626 72316633 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr15 - 78212955 78212962 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr10 - 78377500 78377507 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr10 - 79256718 79256725 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr15 - 101121750 101121757 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr9 - 114460795 114460802 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr7 - 131897339 131897346 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr7 - 131897531 131897538 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr12 - 132400916 132400923 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 148747793 148747800 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr6 - 158031478 158031485 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr1 - 206909817 206909824 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 - 223023014 223023021 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 1121402 1121409 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr19 + 1155084 1155091 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr17 + 1316036 1316043 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 1770083 1770090 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 2556673 2556680 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 2556695 2556702 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr7 + 2856619 2856626 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 3890148 3890155 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr12 + 6946537 6946544 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 9144912 9144919 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr11 + 12066866 12066873 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr1 + 16146366 16146373 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr5 + 16866957 16866964 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr5 + 17306600 17306607 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr12 + 26274670 26274677 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr19 + 33392615 33392622 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr5 + 35617947 35617954 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr17 + 41777867 41777874 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr10 + 44314091 44314098 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr7 + 44767421 44767428 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 47884424 47884431 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 50035745 50035752 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr10 + 58967618 58967625 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 58982774 58982781 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 65026411 65026418 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr17 + 77437249 77437256 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr10 + 78775312 78775319 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr1 + 81127184 81127191 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr14 + 99606431 99606438 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr15 + 101121949 101121956 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr10 + 102644808 102644815 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr12 + 109861719 109861726 8.92e-05 0.238 cctggcga
CCTGGKGA DREME-4 chr13 + 112756636 112756643 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr2 + 120716415 120716422 8.92e-05 0.238 cctggaga
CCTGGKGA DREME-4 chr7 + 128361910 128361917 8.92e-05 0.238 CCTGGCGA
CCTGGKGA DREME-4 chr9 + 128888196 128888203 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 206909857 206909864 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 206909973 206909980 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr1 + 223022974 223022981 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr2 + 241505445 241505452 8.92e-05 0.238 CCTGGAGA
CCTGGKGA DREME-4 chr2 + 241505811 241505818 8.92e-05 0.238 CCTGGAGA

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_8 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif CCTGGKGA /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_8 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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