# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 16:13:01 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZIC2.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 16:13:02 PDT 2018)
#        host: wotan
#        when: Thu May 10 17:55:39 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.203 C 0.304 G 0.294 T 0.199


MOTIF CAGYRGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CAGYRGG    CCYRCTG        283         85   1.4e-036   4.0e-032
#          CAGCAGG    CCTGCTG        197         48   5.8e-028   1.7e-023
#          CAGCGGG    CCCGCTG         50         16   1.0e-005   2.9e-001
#          CAGTGGG    CCCACTG         56         24   1.4e-004   4.1e+000
#          CAGTAGG    CCTACTG         13          2   3.5e-003   1.0e+002

letter-probability matrix: alength= 4 w= 7 nsites= 371 E= 4.0e-032
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.792453 0.000000 0.207547
0.681941 0.000000 0.318059 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF DTAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       DTAAA      TTTAH        177         60   5.7e-018   1.6e-013
#            ATAAA      TTTAT         89         20   8.1e-013   2.3e-008
#            GTAAA      TTTAC         79         29   2.5e-007   7.2e-003
#            TTAAA      TTTAA         52         14   7.5e-007   2.1e-002

letter-probability matrix: alength= 4 w= 5 nsites= 239 E= 1.6e-013
0.422594 0.000000 0.351464 0.225941
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGRAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGRAA      TTYCC        258        146   4.8e-012   1.3e-007
#            GGGAA      TTCCC        189        109   5.7e-008   1.5e-003
#            GGAAA      TTTCC        140         71   1.0e-007   2.8e-003

letter-probability matrix: alength= 4 w= 5 nsites= 325 E= 1.3e-007
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.387692 0.000000 0.612308 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTGGKGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTGGKGA   TCMCCAGG         46          8   3.7e-008   9.6e-004
#         CCTGGGGA   TCCCCAGG         32          7   2.7e-005   7.0e-001
#         CCTGGTGA   TCACCAGG         14          1   4.6e-004   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 9.6e-004
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.695652 0.304348
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 70.75 seconds